Wall clock time and date at job start Mon Mar 30 2020 02:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46944 * 2 1 4 4 C 1.52997 * 109.47104 * 240.00341 * 2 1 3 5 5 C 1.50701 * 109.47140 * 174.99950 * 4 2 1 6 6 H 1.08004 * 119.99836 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99959 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00061 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99844 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47135 * 90.00019 * 9 7 5 11 11 H 1.48494 * 109.46964 * 209.99956 * 9 7 5 12 12 H 1.48500 * 109.47057 * 329.99812 * 9 7 5 13 13 N 1.46896 * 109.47242 * 120.00102 * 2 1 3 14 14 C 1.46910 * 111.00052 * 276.87403 * 13 2 1 15 15 H 1.08998 * 109.46919 * 342.77028 * 14 13 2 16 16 C 1.52999 * 109.46623 * 102.76991 * 14 13 2 17 17 C 1.52999 * 109.47112 * 222.76815 * 14 13 2 18 18 H 1.09000 * 115.54960 * 279.96475 * 17 14 13 19 19 C 1.52996 * 117.49780 * 65.63847 * 17 14 13 20 20 C 1.53003 * 117.49487 * 134.26275 * 17 14 13 21 21 C 1.52997 * 117.50035 * 359.97438 * 20 17 14 22 22 C 1.52995 * 117.49814 * 145.02425 * 20 17 14 23 23 H 1.09001 * 109.47334 * 183.35392 * 1 2 3 24 24 H 1.09004 * 109.47054 * 303.35556 * 1 2 3 25 25 H 1.08999 * 109.47579 * 63.35569 * 1 2 3 26 26 H 1.08996 * 109.47206 * 294.99640 * 4 2 1 27 27 H 1.08994 * 109.47565 * 54.99962 * 4 2 1 28 28 H 0.97000 * 120.00274 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00380 * 40.83150 * 13 2 1 30 30 H 1.09000 * 109.47765 * 63.54631 * 16 14 13 31 31 H 1.09000 * 109.47307 * 183.54168 * 16 14 13 32 32 H 1.08996 * 109.47394 * 303.54067 * 16 14 13 33 33 H 1.09000 * 117.50035 * 214.97632 * 19 17 14 34 34 H 1.09000 * 117.50027 * 359.97438 * 19 17 14 35 35 H 1.08998 * 109.47049 * 63.18584 * 21 20 17 36 36 H 1.09003 * 109.47116 * 183.19285 * 21 20 17 37 37 H 1.09002 * 109.46864 * 303.19056 * 21 20 17 38 38 H 1.08996 * 109.47416 * 59.99277 * 22 20 17 39 39 H 1.08994 * 109.47193 * 179.97438 * 22 20 17 40 40 H 1.09004 * 109.46956 * 299.99491 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1934 -2.3578 8 7 3.5765 -1.8384 -3.2990 9 14 6.0921 -1.0609 -2.4369 10 1 6.7010 -2.2129 -1.7245 11 1 6.5291 -1.0694 -3.8560 12 1 6.5260 0.2049 -1.7929 13 7 2.0197 -0.6925 1.1994 14 6 2.0404 0.2112 2.3575 15 1 1.9853 1.2440 2.0134 16 6 0.8429 -0.0901 3.2608 17 6 3.3368 0.0037 3.1431 18 1 3.3493 -0.8580 3.8105 19 6 4.6490 0.3823 2.4534 20 6 4.1015 1.2525 3.5865 21 6 3.5116 2.6131 3.2100 22 6 4.8256 1.1964 4.9332 23 1 -0.3634 -1.0259 0.0601 24 1 -0.3633 0.5651 0.8584 25 1 -0.3634 0.4608 -0.9185 26 1 1.7517 -1.7714 -1.2057 27 1 1.6054 -0.2617 -2.1370 28 1 4.0608 -2.2452 -4.0344 29 1 1.4683 -1.5152 1.3925 30 1 0.9308 -1.1024 3.6553 31 1 0.8227 0.6210 4.0867 32 1 -0.0781 -0.0035 2.6843 33 1 5.5250 -0.2301 2.6673 34 1 4.5887 0.7787 1.4398 35 1 2.5431 2.7358 3.6946 36 1 4.1853 3.4046 3.5383 37 1 3.3863 2.6679 2.1286 38 1 5.5659 0.3967 4.9146 39 1 5.3238 2.1481 5.1177 40 1 4.1030 1.0044 5.7264 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695857915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:51 Heat of formation + Delta-G solvation = -16.846246 kcal Electronic energy + Delta-G solvation = -16400.393872 eV Core-core repulsion = 14021.238731 eV Total energy + Delta-G solvation = -2379.155142 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09503 -37.80097 -34.96597 -33.15102 -29.87353 -29.21999 -28.88065 -28.35897 -24.99299 -24.11764 -21.61021 -21.22208 -19.40306 -18.33528 -16.62283 -16.49420 -15.89409 -15.66988 -15.16091 -14.56989 -14.35405 -14.32273 -13.78067 -13.67543 -13.46446 -13.22813 -13.16368 -12.92647 -12.79396 -12.65571 -12.44973 -12.43306 -12.22184 -12.13442 -11.87241 -11.61896 -11.06700 -10.95746 -10.59225 -10.47142 -10.25503 -8.88712 -8.07873 -6.11232 1.39782 1.41177 1.51389 2.47665 2.83750 3.25538 3.57001 3.80249 4.05570 4.14313 4.23846 4.29803 4.40499 4.43207 4.51298 4.60040 4.66602 4.82941 4.85261 4.89538 5.00719 5.10029 5.10649 5.11711 5.13774 5.20360 5.22678 5.29674 5.32274 5.35013 5.51203 5.54430 5.61005 5.73882 5.93781 6.40353 6.60759 6.84653 7.03450 7.53794 9.04588 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021764 B = 0.009086 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.233093 B = 3081.049794 C = 4044.098250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H 0.052 0.948 4 C 0.037 3.963 5 C -0.489 4.489 6 H 0.058 0.942 7 C -0.008 4.008 8 N -0.943 5.943 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.675 5.675 14 C 0.111 3.889 15 H 0.064 0.936 16 C -0.164 4.164 17 C -0.124 4.124 18 H 0.099 0.901 19 C -0.173 4.173 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.108 4.108 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.051 0.949 26 H -0.011 1.011 27 H -0.011 1.011 28 H 0.257 0.743 29 H 0.335 0.665 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 6.716 16.450 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.005 4.005 3 H 0.070 0.930 4 C -0.001 4.001 5 C -0.528 4.528 6 H 0.077 0.923 7 C -0.203 4.203 8 N -0.586 5.586 9 Si 0.778 3.222 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.191 1.191 13 N -0.304 5.304 14 C 0.001 3.999 15 H 0.082 0.918 16 C -0.223 4.223 17 C -0.143 4.143 18 H 0.117 0.883 19 C -0.210 4.210 20 C -0.122 4.122 21 C -0.170 4.170 22 C -0.165 4.165 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.066 0.934 29 H 0.154 0.846 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.032 6.736 16.141 17.608 hybrid contribution 0.071 -0.373 -0.679 0.778 sum -1.961 6.364 15.462 16.835 Atomic orbital electron populations 1.22522 0.96997 1.01677 1.01805 1.21481 0.91833 0.96298 0.90887 0.92970 1.19012 0.95198 0.94120 0.91753 1.21506 0.93314 1.31755 1.06223 0.92339 1.25832 1.02582 0.95956 0.95943 1.70093 1.36895 1.38371 1.13191 0.85639 0.81130 0.78599 0.76801 1.20490 1.21243 1.19129 1.60285 1.59230 1.08336 1.02595 1.21181 0.92972 0.95992 0.89757 0.91759 1.22382 0.97265 1.02451 1.00193 1.22392 0.92444 0.98200 1.01242 0.88299 1.22939 0.97736 1.03910 0.96431 1.21762 1.02225 0.92204 0.95993 1.21343 1.01081 0.94274 1.00298 1.21320 0.99410 1.02258 0.93540 0.92836 0.91399 0.93007 0.99255 0.99295 0.93421 0.84641 0.92085 0.91019 0.92396 0.89964 0.91493 0.91202 0.91128 0.94195 0.92874 0.91273 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.60 8.87 71.98 0.64 -4.96 16 2 C 0.10 4.26 2.47 44.91 0.11 4.37 16 3 H 0.05 2.20 7.41 -2.38 -0.02 2.19 16 4 C 0.04 1.95 4.65 29.85 0.14 2.09 16 5 C -0.49 -28.37 8.84 25.60 0.23 -28.15 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 8 N -0.94 -59.30 13.29 21.45 0.28 -59.02 16 9 Si 0.95 46.78 29.54 68.60 2.03 48.81 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 N -0.67 -24.82 5.78 -469.46 -2.71 -27.54 16 14 C 0.11 3.24 2.49 44.91 0.11 3.35 16 15 H 0.06 1.98 5.09 -2.39 -0.01 1.96 16 16 C -0.16 -3.72 9.02 71.98 0.65 -3.07 16 17 C -0.12 -3.56 5.03 -10.79 -0.05 -3.62 16 18 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 19 C -0.17 -5.71 9.50 30.60 0.29 -5.42 16 20 C -0.12 -3.06 2.70 -52.18 -0.14 -3.20 16 21 C -0.11 -2.62 8.42 71.98 0.61 -2.02 16 22 C -0.11 -2.13 9.85 71.98 0.71 -1.42 16 23 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 24 H 0.07 1.84 6.44 -2.38 -0.02 1.82 16 25 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 26 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 28 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.34 11.69 7.96 -89.69 -0.71 10.98 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.28 6.23 -2.39 -0.01 1.26 16 33 H 0.08 2.67 8.05 -2.39 -0.02 2.65 16 34 H 0.07 2.68 7.39 -2.39 -0.02 2.66 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.40 7.98 -2.39 -0.02 1.38 16 37 H 0.04 1.09 7.18 -2.39 -0.02 1.07 16 38 H 0.05 1.07 7.90 -2.39 -0.02 1.05 16 39 H 0.07 1.19 7.96 -2.39 -0.02 1.17 16 40 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -65.06 315.40 3.62 -61.44 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.27 Total: 18.35 kcal Atomic # 6 Polarization: -45.80 SS G_CDS: 3.75 Total: -42.05 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -2.43 Total: -86.55 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -65.06 3.62 -61.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695857915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.597 kcal (2) G-P(sol) polarization free energy of solvation -65.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds