Wall clock time and date at job start Mon Mar 30 2020 02:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46961 * 2 1 4 4 C 1.52994 * 109.46972 * 240.00099 * 2 1 3 5 5 C 1.50702 * 109.47008 * 175.00300 * 4 2 1 6 6 H 1.07999 * 119.99826 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99991 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99960 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99898 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46760 * 89.99885 * 9 7 5 11 11 H 1.48496 * 109.46903 * 209.99542 * 9 7 5 12 12 H 1.48498 * 109.47041 * 330.00057 * 9 7 5 13 13 N 1.46897 * 109.46802 * 120.00043 * 2 1 3 14 14 C 1.46908 * 110.99959 * 268.41415 * 13 2 1 15 15 H 1.09002 * 109.46911 * 330.07910 * 14 13 2 16 16 C 1.52994 * 109.46715 * 90.08032 * 14 13 2 17 17 C 1.53003 * 109.46781 * 210.07916 * 14 13 2 18 18 H 1.09001 * 115.55266 * 26.77463 * 17 14 13 19 19 C 1.53001 * 117.49387 * 241.06054 * 17 14 13 20 20 C 1.52999 * 60.00157 * 252.51605 * 19 17 14 21 21 C 1.52997 * 117.49830 * 252.51434 * 20 19 17 22 22 C 1.52993 * 117.51771 * 107.48590 * 20 19 17 23 23 H 1.08996 * 109.47059 * 186.74613 * 1 2 3 24 24 H 1.09002 * 109.47145 * 306.74155 * 1 2 3 25 25 H 1.09003 * 109.46964 * 66.74321 * 1 2 3 26 26 H 1.09000 * 109.47372 * 294.99950 * 4 2 1 27 27 H 1.08997 * 109.47500 * 54.99598 * 4 2 1 28 28 H 0.97000 * 120.00128 * 180.02562 * 8 7 5 29 29 H 1.00895 * 111.00630 * 32.36937 * 13 2 1 30 30 H 1.09000 * 109.47228 * 44.53852 * 16 14 13 31 31 H 1.09003 * 109.46984 * 164.53663 * 16 14 13 32 32 H 1.08996 * 109.47278 * 284.53185 * 16 14 13 33 33 H 1.08997 * 117.50114 * 0.02562 * 19 17 14 34 34 H 1.09004 * 117.49679 * 145.02591 * 19 17 14 35 35 H 1.08998 * 109.47108 * 128.62498 * 21 20 19 36 36 H 1.09001 * 109.47335 * 248.62122 * 21 20 19 37 37 H 1.08999 * 109.47696 * 8.62129 * 21 20 19 38 38 H 1.09002 * 109.47160 * 5.19081 * 22 20 19 39 39 H 1.08995 * 109.47805 * 125.19308 * 22 20 19 40 40 H 1.09004 * 109.47186 * 245.19846 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5395 7 6 4.2304 -1.1927 -2.3583 8 7 3.5764 -1.8369 -3.3001 9 14 6.0920 -1.0603 -2.4373 10 1 6.7008 -2.2130 -1.7259 11 1 6.5289 -1.0677 -3.8565 12 1 6.5261 0.2048 -1.7922 13 7 2.0196 -0.6925 1.1994 14 6 2.2309 0.2529 2.3038 15 1 2.4974 1.2297 1.9000 16 6 0.9453 0.3738 3.1245 17 6 3.3623 -0.2545 3.2001 18 1 4.0999 -0.8910 2.7113 19 6 3.0242 -0.5577 4.6611 20 6 3.8567 0.6767 4.3090 21 6 5.3484 0.6426 4.6471 22 6 3.1823 2.0440 4.4363 23 1 -0.3633 -1.0205 0.1207 24 1 -0.3633 0.6148 0.8235 25 1 -0.3633 0.4058 -0.9442 26 1 1.7517 -1.7715 -1.2056 27 1 1.6054 -0.2618 -2.1369 28 1 4.0607 -2.2436 -4.0355 29 1 1.3901 -1.4323 1.4722 30 1 0.5292 -0.6189 3.2963 31 1 1.1683 0.8450 4.0818 32 1 0.2226 0.9816 2.5801 33 1 1.9956 -0.3961 4.9837 34 1 3.5392 -1.3941 5.1338 35 1 5.9274 0.9134 3.7642 36 1 5.5556 1.3515 5.4488 37 1 5.6252 -0.3612 4.9693 38 1 2.1877 1.9201 4.8648 39 1 3.7798 2.6851 5.0844 40 1 3.0986 2.5011 3.4502 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695857916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:53 Heat of formation + Delta-G solvation = 9.173780 kcal Electronic energy + Delta-G solvation = -16258.185902 eV Core-core repulsion = 13880.159073 eV Total energy + Delta-G solvation = -2378.026829 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.25621 -36.39688 -32.91885 -31.44354 -28.75400 -28.15856 -27.23544 -26.78068 -23.86975 -22.86909 -19.85037 -19.66141 -18.22065 -16.21206 -15.61142 -15.01117 -14.36511 -14.10218 -14.01598 -13.52044 -13.22994 -12.77748 -12.44686 -12.34738 -12.25601 -11.81026 -11.80800 -11.54023 -11.36577 -11.20725 -10.98044 -10.94559 -10.68349 -10.49407 -10.20652 -9.97531 -9.55833 -9.33757 -9.07806 -8.89275 -8.19244 -7.46250 -5.81806 -3.78689 3.43089 3.48568 3.52465 3.92170 4.61666 4.64707 4.93323 4.98761 5.14516 5.30045 5.41633 5.53694 5.56249 5.59286 5.69125 5.78312 5.83172 5.85825 5.94397 5.97089 6.00791 6.05075 6.08676 6.19687 6.27192 6.33211 6.42564 6.48563 6.51092 6.69131 6.72625 7.12324 7.66942 7.78288 8.14391 8.14618 8.27930 8.68135 9.26604 9.82027 11.30512 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.008096 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.514799 B = 3457.769598 C = 4400.654979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.090 3.910 3 H 0.060 0.940 4 C 0.033 3.967 5 C -0.484 4.484 6 H 0.057 0.943 7 C 0.048 3.952 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 N -0.657 5.657 14 C 0.116 3.884 15 H 0.075 0.925 16 C -0.190 4.190 17 C -0.118 4.118 18 H 0.114 0.886 19 C -0.184 4.184 20 C -0.136 4.136 21 C -0.112 4.112 22 C -0.116 4.116 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.017 0.983 27 H 0.015 0.985 28 H 0.256 0.744 29 H 0.331 0.669 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 5.296 15.224 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.019 4.019 3 H 0.079 0.921 4 C -0.005 4.005 5 C -0.523 4.523 6 H 0.075 0.925 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.287 5.287 14 C 0.006 3.994 15 H 0.093 0.907 16 C -0.248 4.248 17 C -0.137 4.137 18 H 0.132 0.868 19 C -0.221 4.221 20 C -0.136 4.136 21 C -0.170 4.170 22 C -0.173 4.173 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.149 0.851 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.359 5.217 14.841 15.907 hybrid contribution 0.094 0.069 0.135 0.178 sum -2.265 5.286 14.975 16.041 Atomic orbital electron populations 1.22651 0.99475 1.00843 1.00895 1.21855 0.89925 0.97697 0.92428 0.92125 1.19123 0.96153 0.95468 0.89725 1.21151 0.91974 1.32563 1.06574 0.92451 1.25003 0.97862 0.96062 0.96103 1.69966 1.35067 1.37207 1.12432 0.86653 0.86674 0.78268 0.76691 1.20957 1.21670 1.20120 1.60498 1.53125 1.11685 1.03343 1.21030 0.91785 0.95937 0.90692 0.90669 1.22950 0.98986 1.01683 1.01227 1.22620 1.00654 1.01526 0.88883 0.86837 1.23423 1.00395 0.98566 0.99724 1.21541 0.95073 0.91960 1.05039 1.21340 0.93123 1.01421 1.01076 1.21439 0.99585 0.94542 1.01733 0.93161 0.94172 0.92609 0.96511 0.96678 0.93429 0.85092 0.92694 0.91689 0.92978 0.88676 0.89620 0.92153 0.92712 0.92712 0.92353 0.92723 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 8.99 37.16 0.33 -2.71 16 2 C 0.09 1.84 2.57 -67.71 -0.17 1.66 16 3 H 0.06 1.27 7.25 -51.93 -0.38 0.89 16 4 C 0.03 0.85 4.65 -27.89 -0.13 0.72 16 5 C -0.48 -13.87 8.84 -34.44 -0.30 -14.18 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.93 13.29 55.43 0.74 -27.19 16 9 Si 0.89 22.53 29.54 -169.99 -5.02 17.51 16 10 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.66 -12.31 5.78 -99.74 -0.58 -12.89 16 14 C 0.12 1.81 2.37 -67.71 -0.16 1.65 16 15 H 0.08 1.27 6.36 -51.93 -0.33 0.94 16 16 C -0.19 -2.43 7.52 37.15 0.28 -2.15 16 17 C -0.12 -1.77 5.72 -90.62 -0.52 -2.29 16 18 H 0.11 1.99 8.14 -51.93 -0.42 1.56 16 19 C -0.18 -2.29 8.96 -26.73 -0.24 -2.53 16 20 C -0.14 -1.72 2.70 -154.51 -0.42 -2.13 16 21 C -0.11 -1.32 9.82 37.16 0.37 -0.96 16 22 C -0.12 -1.31 8.62 37.15 0.32 -0.99 16 23 H 0.05 0.83 7.98 -51.93 -0.41 0.41 16 24 H 0.04 0.59 6.13 -51.93 -0.32 0.27 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.33 5.82 7.71 -39.29 -0.30 5.52 16 30 H 0.05 0.69 7.76 -51.93 -0.40 0.28 16 31 H 0.06 0.74 3.61 -51.93 -0.19 0.55 16 32 H 0.05 0.66 6.37 -51.93 -0.33 0.33 16 33 H 0.10 1.10 5.74 -51.93 -0.30 0.80 16 34 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.56 7.85 -51.93 -0.41 0.15 16 37 H 0.05 0.62 7.90 -51.93 -0.41 0.21 16 38 H 0.06 0.61 5.92 -51.93 -0.31 0.30 16 39 H 0.05 0.55 7.76 -51.93 -0.40 0.14 16 40 H 0.06 0.73 7.09 -51.93 -0.37 0.36 16 LS Contribution 306.39 15.07 4.62 4.62 Total: -1.00 -30.09 306.39 -7.92 -38.01 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.93 Total: 2.53 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -0.74 Total: -22.58 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.16 Total: -40.08 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.09 -7.92 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695857916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.182 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds