Wall clock time and date at job start Mon Mar 30 2020 02:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47304 * 2 1 4 4 C 1.52992 * 109.47321 * 239.99859 * 2 1 3 5 5 C 1.50700 * 109.47257 * 174.99983 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47163 * 59.99902 * 9 7 5 11 11 H 1.48495 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47290 * 299.99897 * 9 7 5 13 13 N 1.46903 * 109.47018 * 119.99605 * 2 1 3 14 14 C 1.46893 * 111.00409 * 275.00115 * 13 2 1 15 15 C 1.54239 * 108.89737 * 276.39816 * 14 13 2 16 16 C 1.50550 * 108.48645 * 159.17888 * 15 14 13 17 17 C 1.54072 * 112.41874 * 94.26374 * 16 15 14 18 18 C 1.54069 * 112.81248 * 318.27981 * 17 16 15 19 19 C 1.50467 * 112.49597 * 318.28229 * 18 17 16 20 20 C 1.45538 * 108.89832 * 153.60287 * 14 13 2 21 21 H 1.09007 * 109.46968 * 59.99854 * 1 2 3 22 22 H 1.08992 * 109.47130 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47150 * 300.00526 * 1 2 3 24 24 H 1.09004 * 109.47330 * 55.00006 * 4 2 1 25 25 H 1.08997 * 109.47279 * 295.00493 * 4 2 1 26 26 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 27 27 H 1.00901 * 110.99797 * 151.04421 * 13 2 1 28 28 H 1.09006 * 108.87236 * 34.99656 * 14 13 2 29 29 H 1.09007 * 109.62509 * 278.97124 * 15 14 13 30 30 H 1.08995 * 109.62924 * 39.55009 * 15 14 13 31 31 H 1.09007 * 108.92385 * 333.50532 * 16 15 14 32 32 H 1.09005 * 108.91792 * 215.01775 * 16 15 14 33 33 H 1.08994 * 108.81204 * 197.42197 * 17 16 15 34 34 H 1.09000 * 108.72137 * 79.07872 * 17 16 15 35 35 H 1.08995 * 108.87331 * 197.50391 * 18 17 16 36 36 H 1.09000 * 108.87491 * 79.06322 * 18 17 16 37 37 H 1.09001 * 109.63578 * 334.44664 * 19 18 17 38 38 H 1.08996 * 109.62830 * 213.86071 * 19 18 17 39 39 H 1.09001 * 108.89688 * 303.44609 * 20 14 13 40 40 H 1.09004 * 108.89173 * 62.03069 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1927 -2.3583 8 7 3.5769 -1.8412 -3.2973 9 14 6.0922 -1.0614 -2.4365 10 1 6.6839 -1.6884 -1.2274 11 1 6.5872 -1.7614 -3.6490 12 1 6.4856 0.3694 -2.4951 13 7 2.0197 -0.6924 1.1995 14 6 2.0825 0.2226 2.3469 15 6 3.4105 1.0050 2.2898 16 6 3.2635 2.2557 3.1148 17 6 3.7681 2.0699 4.5587 18 6 3.3553 0.7155 5.1660 19 6 1.9364 0.3430 4.8315 20 6 1.9478 -0.5493 3.5734 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.6055 -0.2618 -2.1369 25 1 1.7517 -1.7715 -1.2055 26 1 4.0612 -2.2473 -4.0331 27 1 2.9173 -1.1205 1.0288 28 1 1.2541 0.9281 2.2810 29 1 4.2151 0.3905 2.6937 30 1 3.6336 1.2728 1.2571 31 1 2.2113 2.5392 3.1427 32 1 3.8306 3.0586 2.6436 33 1 3.3640 2.8706 5.1780 34 1 4.8559 2.1393 4.5608 35 1 3.4599 0.7685 6.2496 36 1 4.0221 -0.0589 4.7868 37 1 1.3574 1.2453 4.6351 38 1 1.4955 -0.2044 5.6645 39 1 1.0172 -1.1155 3.5337 40 1 2.7822 -1.2471 3.6446 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695859789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:36 Heat of formation + Delta-G solvation = -36.800530 kcal Electronic energy + Delta-G solvation = -16479.023402 eV Core-core repulsion = 14099.002978 eV Total energy + Delta-G solvation = -2380.020424 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.12639 -35.93479 -32.96877 -31.99042 -31.52909 -27.93210 -27.36051 -24.58827 -23.64254 -22.71448 -20.10690 -19.31675 -19.10231 -16.32731 -15.81458 -15.13646 -14.73745 -14.43946 -13.94232 -13.71173 -13.45533 -12.81418 -12.61104 -11.99953 -11.93175 -11.87914 -11.66079 -11.29211 -11.18479 -10.94161 -10.78094 -10.58824 -10.50086 -10.27705 -10.23501 -10.20768 -10.05967 -9.89705 -9.16700 -9.02203 -8.37073 -7.51999 -6.00471 -4.03194 3.31577 3.36701 3.38430 4.44592 4.68194 4.83331 4.97952 5.15007 5.31137 5.35703 5.39579 5.45904 5.61017 5.65352 5.85551 5.85949 5.98127 6.05018 6.15681 6.21326 6.25693 6.27872 6.32503 6.37072 6.41271 6.48982 6.55759 6.59506 6.70814 6.80458 7.00492 7.01063 7.60328 7.67969 8.00297 8.14842 8.36210 8.42859 9.03079 9.60635 11.10516 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027157 B = 0.007663 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.796770 B = 3653.198426 C = 4293.514637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.029 0.971 4 C 0.020 3.980 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.683 5.683 14 C 0.091 3.909 15 C -0.149 4.149 16 C -0.114 4.114 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.105 4.105 21 H 0.046 0.954 22 H 0.053 0.947 23 H 0.035 0.965 24 H 0.019 0.981 25 H 0.025 0.975 26 H 0.261 0.739 27 H 0.354 0.646 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.947 5.739 14.255 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.047 0.953 4 C -0.017 4.017 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.716 3.284 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.315 5.315 14 C -0.019 4.019 15 C -0.188 4.188 16 C -0.152 4.152 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.143 4.143 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.175 0.825 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.544 5.364 14.229 15.418 hybrid contribution 1.918 0.639 -0.419 2.065 sum -0.625 6.003 13.810 15.071 Atomic orbital electron populations 1.21803 0.96986 1.01195 0.99304 1.21586 0.93086 0.96001 0.91523 0.95269 1.19273 0.95369 0.96157 0.90912 1.21162 0.92249 1.34403 1.08227 0.92943 1.24986 0.98108 0.95245 0.95771 1.69955 1.35551 1.35493 1.12067 0.86723 0.86085 0.78127 0.77451 1.20222 1.21297 1.20398 1.60785 1.34628 1.31695 1.04395 1.20463 0.95625 0.93757 0.92103 1.22130 0.99278 0.96966 1.00461 1.21287 1.01047 0.98131 0.94709 1.21902 1.00292 0.96996 0.96034 1.21343 0.97270 0.97496 0.99449 1.21296 0.96596 0.99789 0.97647 1.20451 1.02477 0.98094 0.93269 0.93488 0.92756 0.94601 0.96240 0.95703 0.92945 0.82543 0.91869 0.91848 0.91127 0.92403 0.92825 0.92832 0.92697 0.92959 0.92009 0.91954 0.92318 0.91738 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.40 37.16 0.35 -2.14 16 2 C 0.09 1.83 2.28 -67.71 -0.15 1.68 16 3 H 0.03 0.63 7.09 -51.93 -0.37 0.26 16 4 C 0.02 0.52 4.57 -27.89 -0.13 0.39 16 5 C -0.52 -14.32 8.12 -34.44 -0.28 -14.60 16 6 H 0.05 1.39 7.10 -52.49 -0.37 1.02 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -13.14 5.96 -102.78 -0.61 -13.76 16 14 C 0.09 1.44 1.80 -70.59 -0.13 1.31 16 15 C -0.15 -2.31 4.83 -27.31 -0.13 -2.44 16 16 C -0.11 -1.47 5.32 -27.40 -0.15 -1.62 16 17 C -0.11 -1.29 5.85 -25.61 -0.15 -1.44 16 18 C -0.12 -1.31 5.31 -27.44 -0.15 -1.45 16 19 C -0.12 -1.32 5.61 -27.35 -0.15 -1.47 16 20 C -0.10 -1.46 4.77 -29.60 -0.14 -1.60 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.03 0.59 7.40 -51.93 -0.38 0.20 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.35 7.47 6.96 -39.29 -0.27 7.19 16 28 H 0.06 1.02 6.38 -51.93 -0.33 0.69 16 29 H 0.06 0.98 6.97 -51.93 -0.36 0.62 16 30 H 0.07 1.28 6.87 -51.93 -0.36 0.92 16 31 H 0.06 0.74 6.63 -51.92 -0.34 0.39 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.73 6.62 -51.93 -0.34 0.39 16 37 H 0.06 0.71 6.98 -51.93 -0.36 0.35 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.84 7.46 -51.93 -0.39 0.45 16 LS Contribution 299.61 15.07 4.52 4.52 Total: -1.00 -28.19 299.61 -8.94 -37.12 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.25 Total: 3.30 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -1.30 Total: -21.76 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.12 Total: -39.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.19 -8.94 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695859789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.323 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds