Wall clock time and date at job start Mon Mar 30 2020 02:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47476 * 2 1 4 4 C 1.52995 * 109.47216 * 120.00584 * 2 1 3 5 5 C 1.50698 * 109.47367 * 184.99809 * 4 2 1 6 6 H 1.08001 * 119.99987 * 359.72676 * 5 4 2 7 7 C 1.37875 * 120.00118 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00187 * 359.72382 * 7 5 4 9 9 Si 1.86804 * 120.00193 * 179.72540 * 7 5 4 10 10 H 1.48497 * 109.47010 * 89.99951 * 9 7 5 11 11 H 1.48490 * 109.47112 * 209.99969 * 9 7 5 12 12 H 1.48496 * 109.46910 * 330.00206 * 9 7 5 13 13 N 1.46902 * 109.47074 * 240.00695 * 2 1 3 14 14 C 1.46899 * 111.00308 * 116.47427 * 13 2 1 15 15 C 1.54243 * 108.89159 * 279.52036 * 14 13 2 16 16 C 1.50479 * 108.52339 * 159.26462 * 15 14 13 17 17 C 1.54073 * 112.49868 * 94.14703 * 16 15 14 18 18 C 1.54064 * 112.81880 * 318.28401 * 17 16 15 19 19 C 1.50472 * 112.49463 * 318.28555 * 18 17 16 20 20 C 1.45537 * 108.89736 * 156.63783 * 14 13 2 21 21 H 1.09001 * 109.46625 * 305.60549 * 1 2 3 22 22 H 1.09006 * 109.47097 * 65.60262 * 1 2 3 23 23 H 1.08993 * 109.47331 * 185.60365 * 1 2 3 24 24 H 1.08998 * 109.47222 * 64.99504 * 4 2 1 25 25 H 1.09000 * 109.46932 * 304.99981 * 4 2 1 26 26 H 0.96999 * 120.00506 * 180.02562 * 8 7 5 27 27 H 1.00912 * 110.99867 * 240.42765 * 13 2 1 28 28 H 1.09002 * 108.87280 * 38.03159 * 14 13 2 29 29 H 1.09001 * 109.62768 * 278.97040 * 15 14 13 30 30 H 1.08997 * 109.63215 * 39.55131 * 15 14 13 31 31 H 1.09002 * 108.87379 * 333.37519 * 16 15 14 32 32 H 1.08998 * 108.87398 * 214.92404 * 16 15 14 33 33 H 1.08995 * 108.81111 * 197.42290 * 17 16 15 34 34 H 1.09005 * 108.72507 * 79.08443 * 17 16 15 35 35 H 1.08991 * 108.88032 * 197.50554 * 18 17 16 36 36 H 1.09006 * 108.79723 * 79.00575 * 18 17 16 37 37 H 1.08997 * 109.63426 * 334.44382 * 19 18 17 38 38 H 1.08998 * 109.62969 * 213.86165 * 19 18 17 39 39 H 1.09006 * 108.89507 * 303.44298 * 20 14 13 40 40 H 1.09004 * 108.90130 * 62.02730 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.6151 1.3126 6 1 4.0793 -0.0897 0.5370 7 6 4.2303 -1.1929 2.3582 8 7 3.5759 -1.8322 3.3029 9 14 6.0927 -1.0678 2.4328 10 1 6.4769 0.1553 3.1822 11 1 6.6419 -2.2632 3.1215 12 1 6.6396 -0.9959 1.0541 13 7 2.0197 -0.6924 -1.1995 14 6 2.7716 0.2246 -2.0666 15 6 1.7738 1.0570 -2.8977 16 6 2.4724 2.3000 -3.3786 17 6 3.0679 2.1330 -4.7897 18 6 3.7452 0.7644 -4.9943 19 6 4.5571 0.3397 -3.8008 20 6 3.6766 -0.5517 -2.9012 21 1 -0.3632 0.5983 0.8356 22 1 -0.3633 0.4245 -0.9359 23 1 -0.3633 -1.0227 0.1003 24 1 1.7516 -1.7716 1.2054 25 1 1.6054 -0.2619 2.1369 26 1 4.0601 -2.2384 4.0387 27 1 2.5786 -1.4950 -0.9510 28 1 3.3579 0.8989 -1.4424 29 1 1.4339 0.4737 -3.7534 30 1 0.9212 1.3330 -2.2772 31 1 3.2757 2.5443 -2.6835 32 1 1.7579 3.1230 -3.3925 33 1 3.8054 2.9184 -4.9552 34 1 2.2682 2.2425 -5.5223 35 1 4.3997 0.8213 -5.8640 36 1 2.9751 0.0159 -5.1814 37 1 4.8768 1.2200 -3.2432 38 1 5.4293 -0.2234 -4.1328 39 1 4.3215 -1.1518 -2.2593 40 1 3.0897 -1.2182 -3.5334 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695859790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:37 Heat of formation + Delta-G solvation = -35.827329 kcal Electronic energy + Delta-G solvation = -16533.868836 eV Core-core repulsion = 14153.890612 eV Total energy + Delta-G solvation = -2379.978223 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.06337 -35.93988 -32.92752 -32.06727 -31.47441 -27.98241 -27.32545 -24.49120 -23.62768 -22.71649 -20.13383 -19.34714 -18.98600 -16.36736 -15.76471 -15.06016 -14.66806 -14.50366 -14.21464 -13.50710 -12.99517 -12.81714 -12.57713 -12.35821 -11.90204 -11.84084 -11.60254 -11.40520 -11.27734 -10.82606 -10.73374 -10.51294 -10.49391 -10.28294 -10.17099 -10.14993 -9.99035 -9.87491 -9.20958 -9.03423 -8.40865 -7.49139 -6.03290 -4.06445 3.28270 3.35215 3.37553 4.42291 4.68878 4.91435 4.98499 5.16621 5.33351 5.34919 5.46906 5.53635 5.57833 5.68927 5.88018 5.92548 6.04408 6.10072 6.21648 6.24449 6.30347 6.31515 6.35368 6.38689 6.48649 6.54615 6.61089 6.68891 6.71759 6.81137 6.94920 7.08138 7.56100 7.64192 7.96108 8.14722 8.35889 8.39791 9.00671 9.58195 11.07607 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026159 B = 0.008148 C = 0.006691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.111127 B = 3435.449973 C = 4183.991271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.086 3.914 3 H 0.044 0.956 4 C 0.008 3.992 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.683 5.683 14 C 0.094 3.906 15 C -0.104 4.104 16 C -0.120 4.120 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.114 4.114 20 C -0.119 4.119 21 H 0.043 0.957 22 H 0.041 0.959 23 H 0.049 0.951 24 H 0.021 0.979 25 H 0.019 0.981 26 H 0.260 0.740 27 H 0.349 0.651 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.075 5.427 -13.858 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.024 4.024 3 H 0.063 0.937 4 C -0.030 4.030 5 C -0.560 4.560 6 H 0.070 0.930 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.315 5.315 14 C -0.016 4.016 15 C -0.142 4.142 16 C -0.158 4.158 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.157 4.157 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.038 0.962 26 H 0.070 0.930 27 H 0.168 0.832 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.643 5.391 -14.025 15.115 hybrid contribution 1.916 0.143 0.759 2.066 sum 0.273 5.533 -13.267 14.377 Atomic orbital electron populations 1.21833 0.96969 1.00890 0.99400 1.21655 0.93207 0.96771 0.90764 0.93734 1.19549 0.95551 0.95888 0.91979 1.21202 0.92171 1.34484 1.08160 0.92950 1.24995 0.98156 0.95244 0.95744 1.69960 1.35455 1.35869 1.11800 0.86661 0.86065 0.77544 0.78158 1.20743 1.21199 1.19908 1.60767 1.42353 1.09912 1.18478 1.20379 0.92844 0.94319 0.94054 1.21348 0.98206 0.95318 0.99293 1.21352 0.99820 0.98289 0.96358 1.21897 0.99228 0.96979 0.97041 1.21335 0.99022 0.97252 0.97784 1.21272 0.97754 0.99750 0.96496 1.20642 0.97762 0.98492 0.98794 0.93842 0.93948 0.93223 0.96035 0.96227 0.92980 0.83155 0.94354 0.92009 0.91677 0.92217 0.92787 0.92839 0.92742 0.92951 0.91991 0.91771 0.92252 0.91998 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.47 37.16 0.35 -2.09 16 2 C 0.09 1.79 2.18 -67.71 -0.15 1.65 16 3 H 0.04 0.97 7.23 -51.93 -0.38 0.59 16 4 C 0.01 0.20 4.30 -27.89 -0.12 0.08 16 5 C -0.52 -14.37 8.42 -34.44 -0.29 -14.66 16 6 H 0.05 1.42 7.47 -52.49 -0.39 1.02 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -13.15 6.06 -102.78 -0.62 -13.77 16 14 C 0.09 1.59 1.86 -70.58 -0.13 1.45 16 15 C -0.10 -1.51 5.16 -27.34 -0.14 -1.66 16 16 C -0.12 -1.53 5.31 -27.43 -0.15 -1.68 16 17 C -0.11 -1.26 5.85 -25.62 -0.15 -1.41 16 18 C -0.12 -1.32 5.32 -27.44 -0.15 -1.47 16 19 C -0.11 -1.48 5.61 -27.34 -0.15 -1.63 16 20 C -0.12 -1.81 4.52 -29.60 -0.13 -1.94 16 21 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.04 0.71 6.94 -51.93 -0.36 0.35 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 27 H 0.35 7.32 7.09 -39.29 -0.28 7.04 16 28 H 0.04 0.74 6.57 -51.93 -0.34 0.40 16 29 H 0.06 0.87 6.97 -51.93 -0.36 0.51 16 30 H 0.06 1.02 6.38 -51.93 -0.33 0.68 16 31 H 0.06 0.82 6.63 -51.93 -0.34 0.48 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.72 6.62 -51.93 -0.34 0.38 16 37 H 0.06 0.87 6.98 -51.93 -0.36 0.51 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.03 7.93 -51.93 -0.41 0.62 16 40 H 0.06 0.94 7.46 -51.93 -0.39 0.55 16 LS Contribution 299.51 15.07 4.51 4.51 Total: -1.00 -28.29 299.51 -8.93 -37.22 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.23 Total: 3.13 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -1.30 Total: -21.75 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.11 Total: -39.65 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.29 -8.93 -37.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695859790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.394 kcal (2) G-P(sol) polarization free energy of solvation -28.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds