Wall clock time and date at job start Mon Mar 30 2020 02:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47476 * 2 1 4 4 C 1.52995 * 109.47216 * 120.00584 * 2 1 3 5 5 C 1.50698 * 109.47367 * 184.99809 * 4 2 1 6 6 H 1.08001 * 119.99987 * 359.72676 * 5 4 2 7 7 C 1.37875 * 120.00118 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00187 * 359.72382 * 7 5 4 9 9 Si 1.86804 * 120.00193 * 179.72540 * 7 5 4 10 10 H 1.48497 * 109.47010 * 89.99951 * 9 7 5 11 11 H 1.48490 * 109.47112 * 209.99969 * 9 7 5 12 12 H 1.48496 * 109.46910 * 330.00206 * 9 7 5 13 13 N 1.46902 * 109.47074 * 240.00695 * 2 1 3 14 14 C 1.46899 * 111.00308 * 116.47427 * 13 2 1 15 15 C 1.54243 * 108.89159 * 279.52036 * 14 13 2 16 16 C 1.50479 * 108.52339 * 159.26462 * 15 14 13 17 17 C 1.54073 * 112.49868 * 94.14703 * 16 15 14 18 18 C 1.54064 * 112.81880 * 318.28401 * 17 16 15 19 19 C 1.50472 * 112.49463 * 318.28555 * 18 17 16 20 20 C 1.45537 * 108.89736 * 156.63783 * 14 13 2 21 21 H 1.09001 * 109.46625 * 305.60549 * 1 2 3 22 22 H 1.09006 * 109.47097 * 65.60262 * 1 2 3 23 23 H 1.08993 * 109.47331 * 185.60365 * 1 2 3 24 24 H 1.08998 * 109.47222 * 64.99504 * 4 2 1 25 25 H 1.09000 * 109.46932 * 304.99981 * 4 2 1 26 26 H 0.96999 * 120.00506 * 180.02562 * 8 7 5 27 27 H 1.00912 * 110.99867 * 240.42765 * 13 2 1 28 28 H 1.09002 * 108.87280 * 38.03159 * 14 13 2 29 29 H 1.09001 * 109.62768 * 278.97040 * 15 14 13 30 30 H 1.08997 * 109.63215 * 39.55131 * 15 14 13 31 31 H 1.09002 * 108.87379 * 333.37519 * 16 15 14 32 32 H 1.08998 * 108.87398 * 214.92404 * 16 15 14 33 33 H 1.08995 * 108.81111 * 197.42290 * 17 16 15 34 34 H 1.09005 * 108.72507 * 79.08443 * 17 16 15 35 35 H 1.08991 * 108.88032 * 197.50554 * 18 17 16 36 36 H 1.09006 * 108.79723 * 79.00575 * 18 17 16 37 37 H 1.08997 * 109.63426 * 334.44382 * 19 18 17 38 38 H 1.08998 * 109.62969 * 213.86165 * 19 18 17 39 39 H 1.09006 * 108.89507 * 303.44298 * 20 14 13 40 40 H 1.09004 * 108.90130 * 62.02730 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5419 -0.6151 1.3126 6 1 4.0793 -0.0897 0.5370 7 6 4.2303 -1.1929 2.3582 8 7 3.5759 -1.8322 3.3029 9 14 6.0927 -1.0678 2.4328 10 1 6.4769 0.1553 3.1822 11 1 6.6419 -2.2632 3.1215 12 1 6.6396 -0.9959 1.0541 13 7 2.0197 -0.6924 -1.1995 14 6 2.7716 0.2246 -2.0666 15 6 1.7738 1.0570 -2.8977 16 6 2.4724 2.3000 -3.3786 17 6 3.0679 2.1330 -4.7897 18 6 3.7452 0.7644 -4.9943 19 6 4.5571 0.3397 -3.8008 20 6 3.6766 -0.5517 -2.9012 21 1 -0.3632 0.5983 0.8356 22 1 -0.3633 0.4245 -0.9359 23 1 -0.3633 -1.0227 0.1003 24 1 1.7516 -1.7716 1.2054 25 1 1.6054 -0.2619 2.1369 26 1 4.0601 -2.2384 4.0387 27 1 2.5786 -1.4950 -0.9510 28 1 3.3579 0.8989 -1.4424 29 1 1.4339 0.4737 -3.7534 30 1 0.9212 1.3330 -2.2772 31 1 3.2757 2.5443 -2.6835 32 1 1.7579 3.1230 -3.3925 33 1 3.8054 2.9184 -4.9552 34 1 2.2682 2.2425 -5.5223 35 1 4.3997 0.8213 -5.8640 36 1 2.9751 0.0159 -5.1814 37 1 4.8768 1.2200 -3.2432 38 1 5.4293 -0.2234 -4.1328 39 1 4.3215 -1.1518 -2.2593 40 1 3.0897 -1.2182 -3.5334 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695859790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:37 Heat of formation + Delta-G solvation = -51.922799 kcal Electronic energy + Delta-G solvation = -16534.566788 eV Core-core repulsion = 14153.890612 eV Total energy + Delta-G solvation = -2380.676175 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.32585 -37.47829 -34.84021 -33.39867 -32.80456 -29.42441 -29.26769 -25.58087 -25.22581 -24.33129 -21.52546 -20.93183 -20.02804 -18.52947 -17.11006 -16.64846 -16.25599 -15.84945 -15.48918 -14.92995 -14.42475 -14.25217 -13.91811 -13.86302 -13.40119 -13.26186 -13.17248 -12.94106 -12.76643 -12.65402 -12.44354 -12.22756 -11.81867 -11.66672 -11.39626 -11.33877 -11.15152 -11.12924 -11.01633 -10.92552 -10.61635 -9.12391 -8.22833 -6.33482 1.35250 1.35443 1.46329 2.36235 3.09156 3.35825 3.83014 3.92939 4.12461 4.27023 4.34321 4.36256 4.44064 4.48170 4.56012 4.70270 4.72675 4.77605 4.95362 4.99411 5.09406 5.10442 5.16203 5.22593 5.29383 5.32501 5.34219 5.38296 5.40954 5.47627 5.51763 5.54444 5.62276 5.65136 5.80696 6.19792 6.47177 6.67824 6.82035 7.35676 8.88660 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026159 B = 0.008148 C = 0.006691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.111127 B = 3435.449973 C = 4183.991271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.096 3.904 3 H 0.036 0.964 4 C 0.015 3.985 5 C -0.532 4.532 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.265 1.265 13 N -0.677 5.677 14 C 0.096 3.904 15 C -0.095 4.095 16 C -0.119 4.119 17 C -0.111 4.111 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.117 4.117 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.045 0.955 24 H -0.003 1.003 25 H -0.008 1.008 26 H 0.263 0.737 27 H 0.336 0.664 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 6.300 -15.945 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.014 4.014 3 H 0.054 0.946 4 C -0.023 4.023 5 C -0.570 4.570 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.189 1.189 13 N -0.308 5.308 14 C -0.014 4.014 15 C -0.133 4.133 16 C -0.157 4.157 17 C -0.148 4.148 18 C -0.152 4.152 19 C -0.148 4.148 20 C -0.155 4.155 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.015 0.985 25 H 0.010 0.990 26 H 0.072 0.928 27 H 0.154 0.846 28 H 0.029 0.971 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.043 6.280 -16.132 17.342 hybrid contribution 1.703 -0.137 1.431 2.229 sum 0.659 6.143 -14.700 15.946 Atomic orbital electron populations 1.21747 0.94674 1.01004 1.00872 1.21478 0.95004 0.95527 0.89375 0.94553 1.19444 0.94937 0.94644 0.93231 1.21492 0.93207 1.34153 1.08113 0.92854 1.25869 1.03207 0.94840 0.95360 1.70086 1.37489 1.36860 1.12525 0.85574 0.80020 0.77700 0.78563 1.20095 1.20670 1.18893 1.60920 1.42539 1.09788 1.17563 1.20494 0.93373 0.93751 0.93762 1.21271 0.97242 0.95858 0.98920 1.21329 0.99557 0.97559 0.97271 1.21885 0.99895 0.97139 0.95928 1.21319 0.99113 0.97332 0.97457 1.21251 0.97941 0.98997 0.96627 1.20622 0.97524 0.98637 0.98702 0.93277 0.91699 0.93624 0.98487 0.98979 0.92795 0.84601 0.97058 0.90997 0.92637 0.93672 0.91552 0.91812 0.91238 0.91026 0.92023 0.92608 0.91161 0.94198 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 9.47 71.98 0.68 -3.85 16 2 C 0.10 4.09 2.18 44.91 0.10 4.19 16 3 H 0.04 1.60 7.23 -2.39 -0.02 1.58 16 4 C 0.02 0.81 4.30 29.85 0.13 0.93 16 5 C -0.53 -29.95 8.42 25.60 0.22 -29.73 16 6 H 0.05 2.94 7.47 -2.91 -0.02 2.91 16 7 C 0.01 0.31 5.46 84.65 0.46 0.78 16 8 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 9 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 13 N -0.68 -26.28 6.06 -479.09 -2.90 -29.18 16 14 C 0.10 3.20 1.86 43.06 0.08 3.28 16 15 C -0.09 -2.62 5.16 30.20 0.16 -2.47 16 16 C -0.12 -2.80 5.31 30.14 0.16 -2.64 16 17 C -0.11 -2.10 5.85 31.32 0.18 -1.92 16 18 C -0.11 -2.25 5.32 30.14 0.16 -2.09 16 19 C -0.11 -2.65 5.61 30.20 0.17 -2.48 16 20 C -0.12 -3.48 4.52 28.74 0.13 -3.35 16 21 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.06 2.06 6.94 -2.38 -0.02 2.04 16 23 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 25 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 26 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 27 H 0.34 14.46 7.09 -89.68 -0.64 13.82 16 28 H 0.01 0.45 6.57 -2.39 -0.02 0.43 16 29 H 0.07 1.85 6.97 -2.39 -0.02 1.84 16 30 H 0.05 1.64 6.38 -2.39 -0.02 1.62 16 31 H 0.04 1.19 6.63 -2.39 -0.02 1.17 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.23 6.62 -2.38 -0.02 1.22 16 37 H 0.06 1.44 6.98 -2.39 -0.02 1.42 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.34 7.93 -2.38 -0.02 1.32 16 40 H 0.07 2.03 7.46 -2.38 -0.02 2.01 16 Total: -1.00 -61.09 299.51 2.38 -58.70 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.35 Total: 19.60 kcal Atomic # 6 Polarization: -41.96 SS G_CDS: 2.62 Total: -39.34 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -2.62 Total: -85.54 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -61.09 2.38 -58.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695859790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.781 kcal (2) G-P(sol) polarization free energy of solvation -61.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds