Wall clock time and date at job start Mon Mar 30 2020 03:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.46904 * 2 1 4 4 C 1.46894 * 110.99978 * 298.66034 * 3 2 1 5 5 C 1.53002 * 109.47411 * 288.36136 * 4 3 2 6 6 C 1.52999 * 109.47228 * 180.34050 * 5 4 3 7 7 C 1.50697 * 109.47187 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99708 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00222 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99842 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47179 * 59.99681 * 11 9 7 13 13 H 1.48506 * 109.47025 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47179 * 299.99553 * 11 9 7 15 15 C 1.46902 * 110.99864 * 62.61970 * 3 2 1 16 16 C 1.52997 * 109.47607 * 66.04684 * 15 3 2 17 17 H 1.09001 * 115.55899 * 29.30533 * 16 15 3 18 18 C 1.53076 * 117.49124 * 243.59985 * 16 15 3 19 19 C 1.52991 * 117.49972 * 175.00052 * 16 15 3 20 20 H 1.09003 * 117.50096 * 359.97102 * 19 16 15 21 21 C 1.53009 * 117.49910 * 214.97976 * 19 16 15 22 22 H 1.09002 * 109.46812 * 62.90174 * 1 2 3 23 23 H 1.08997 * 109.47260 * 182.89054 * 1 2 3 24 24 H 1.09001 * 109.47474 * 302.89980 * 1 2 3 25 25 H 1.08993 * 109.47435 * 239.99798 * 2 1 3 26 26 H 1.09008 * 109.46674 * 119.99617 * 2 1 3 27 27 H 1.09001 * 109.46940 * 48.35961 * 4 3 2 28 28 H 1.08996 * 109.47061 * 168.35479 * 4 3 2 29 29 H 1.09001 * 109.46639 * 300.33973 * 5 4 3 30 30 H 1.09000 * 109.46757 * 60.33902 * 5 4 3 31 31 H 1.09003 * 109.47159 * 300.00326 * 6 5 4 32 32 H 1.09003 * 109.46901 * 60.00050 * 6 5 4 33 33 H 0.96999 * 120.00116 * 180.02562 * 10 9 7 34 34 H 1.08994 * 109.47169 * 306.04150 * 15 3 2 35 35 H 1.09006 * 109.46374 * 186.04629 * 15 3 2 36 36 H 1.08999 * 117.51132 * 145.03166 * 18 16 15 37 37 H 1.08997 * 117.49397 * 359.97438 * 18 16 15 38 38 H 1.08996 * 109.46835 * 60.07940 * 21 19 16 39 39 H 1.09008 * 109.46427 * 300.08491 * 21 19 16 40 40 H 1.08999 * 109.47262 * 180.08886 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5750 2.1006 -1.2034 5 6 2.3381 1.5747 -2.4207 6 6 1.8811 2.3259 -3.6728 7 6 2.6332 1.8084 -4.8717 8 1 3.3645 1.0226 -4.7525 9 6 2.3886 2.3388 -6.1207 10 7 1.4985 3.2960 -6.2658 11 14 3.3215 1.6978 -7.6066 12 1 3.0503 0.2473 -7.7734 13 1 2.8777 2.4268 -8.8219 14 1 4.7776 1.9093 -7.4060 15 6 1.6004 2.0916 1.2178 16 6 2.2852 1.4635 2.4333 17 1 3.2598 1.0137 2.2437 18 6 1.3912 0.7979 3.4825 19 6 2.0689 2.1344 3.7911 20 1 1.4390 3.0236 3.8185 21 6 3.2372 2.1227 4.7791 22 1 -0.3633 0.4681 -0.9149 23 1 -0.3633 -1.0263 0.0518 24 1 -0.3634 0.5582 0.8628 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.5065 1.9402 -1.3473 28 1 1.7696 3.1664 -1.0850 29 1 3.4071 1.7296 -2.2740 30 1 2.1385 0.5101 -2.5425 31 1 0.8121 2.1711 -3.8194 32 1 2.0807 3.3905 -3.5509 33 1 1.3262 3.6689 -7.1445 34 1 0.5190 2.0132 1.3293 35 1 1.8830 3.1418 1.1439 36 1 1.7776 -0.0898 3.9832 37 1 0.3156 0.8081 3.3066 38 1 4.0911 2.6366 4.3379 39 1 3.5107 1.0922 5.0059 40 1 2.9418 2.6307 5.6971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698355965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:14 Heat of formation + Delta-G solvation = 3.280398 kcal Electronic energy + Delta-G solvation = -15573.646591 eV Core-core repulsion = 13195.364206 eV Total energy + Delta-G solvation = -2378.282385 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.94072 -36.89008 -33.66198 -31.49130 -30.20996 -28.81958 -26.83628 -25.05480 -23.55251 -21.67969 -20.71923 -19.87471 -19.24194 -16.26061 -16.02632 -15.28836 -15.10052 -14.46820 -14.37835 -13.52893 -13.34135 -13.08949 -12.98436 -12.39170 -12.25251 -12.11370 -11.82826 -11.59105 -11.43052 -11.25904 -11.03013 -10.80583 -10.60134 -10.51647 -10.44841 -10.00355 -9.75076 -9.49974 -9.24734 -9.00987 -8.29434 -7.92491 -5.95115 -3.96889 3.36826 3.40631 3.43638 3.65809 4.15714 4.50798 4.67073 4.79662 4.92295 5.16018 5.21038 5.36665 5.40607 5.47295 5.50152 5.62757 5.65849 5.69361 5.70450 5.75459 5.86369 5.89334 5.97008 6.03824 6.12883 6.23818 6.32664 6.43821 6.46096 6.78370 6.87897 7.21211 7.46605 7.50792 7.74190 7.90123 8.05962 8.49742 9.10272 9.66740 11.16385 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050638 B = 0.004342 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.813447 B = 6446.561355 C = 6592.819636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.050 3.950 3 N -0.534 5.534 4 C 0.051 3.949 5 C -0.102 4.102 6 C 0.022 3.978 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.079 3.921 16 C -0.134 4.134 17 H 0.111 0.889 18 C -0.181 4.181 19 C -0.156 4.156 20 H 0.100 0.900 21 C -0.121 4.121 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.013 0.987 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 -4.000 19.024 19.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.078 4.078 3 N -0.257 5.257 4 C -0.076 4.076 5 C -0.140 4.140 6 C -0.016 4.016 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.049 4.049 16 C -0.153 4.153 17 H 0.129 0.871 18 C -0.218 4.218 19 C -0.175 4.175 20 H 0.118 0.882 21 C -0.178 4.178 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.289 -3.891 18.877 19.276 hybrid contribution -0.534 -0.267 -0.888 1.070 sum -0.823 -4.158 17.989 18.482 Atomic orbital electron populations 1.22413 0.98840 1.01844 1.02036 1.22123 0.92545 0.90679 1.02422 1.62274 1.59452 1.02227 1.01771 1.22354 0.97823 0.97709 0.89754 1.21603 0.99234 0.99525 0.93625 1.19072 0.96355 0.95410 0.90748 1.21231 1.22080 1.19906 0.92373 0.92744 1.25027 0.95371 0.95111 0.99020 1.69958 1.33682 1.26658 1.23415 0.86663 0.80301 0.78949 0.82112 1.20287 1.21348 1.20223 1.21713 0.96646 0.97724 0.88769 1.22421 1.00773 1.02954 0.89114 0.87114 1.23213 0.98626 0.95932 1.03993 1.22368 1.00810 0.96655 0.97666 0.88153 1.21341 0.96860 1.01713 0.97864 0.91920 0.92534 0.92907 0.90372 0.91242 0.94687 0.91611 0.92741 0.93558 0.96911 0.96698 0.93032 0.94600 0.90796 0.89125 0.89261 0.92121 0.92706 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 9.27 37.16 0.34 -2.16 16 2 C 0.05 0.71 5.74 -3.82 -0.02 0.68 16 3 N -0.53 -8.20 4.67 -234.63 -1.10 -9.29 16 4 C 0.05 0.91 4.82 -3.83 -0.02 0.89 16 5 C -0.10 -2.18 5.19 -26.73 -0.14 -2.32 16 6 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 11 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.08 1.03 5.04 -3.82 -0.02 1.01 16 16 C -0.13 -1.50 4.48 -90.59 -0.41 -1.91 16 17 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 18 C -0.18 -1.75 9.83 -26.70 -0.26 -2.01 16 19 C -0.16 -1.50 6.12 -90.62 -0.55 -2.06 16 20 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.12 -1.00 10.19 37.16 0.38 -0.63 16 22 H 0.06 0.92 6.35 -51.93 -0.33 0.59 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.64 6.20 -51.93 -0.32 0.32 16 25 H 0.08 1.19 6.65 -51.93 -0.35 0.84 16 26 H 0.07 0.88 7.20 -51.92 -0.37 0.50 16 27 H 0.03 0.63 5.88 -51.93 -0.31 0.32 16 28 H 0.07 1.18 7.82 -51.93 -0.41 0.78 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.98 6.74 -51.93 -0.35 0.63 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.04 0.46 5.76 -51.93 -0.30 0.16 16 35 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 36 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 37 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.44 7.90 -51.92 -0.41 0.03 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 314.65 15.07 4.74 4.74 Total: -1.00 -29.85 314.65 -9.19 -39.04 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -7.31 Total: -2.92 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -1.25 Total: -21.87 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.36 Total: -36.01 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.85 -9.19 -39.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698355965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.324 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds