Wall clock time and date at job start Mon Mar 30 2020 03:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.46904 * 2 1 4 4 C 1.46894 * 110.99978 * 298.66034 * 3 2 1 5 5 C 1.53002 * 109.47411 * 288.36136 * 4 3 2 6 6 C 1.52999 * 109.47228 * 180.34050 * 5 4 3 7 7 C 1.50697 * 109.47187 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99708 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00222 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99842 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47179 * 59.99681 * 11 9 7 13 13 H 1.48506 * 109.47025 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47179 * 299.99553 * 11 9 7 15 15 C 1.46902 * 110.99864 * 62.61970 * 3 2 1 16 16 C 1.52997 * 109.47607 * 66.04684 * 15 3 2 17 17 H 1.09001 * 115.55899 * 29.30533 * 16 15 3 18 18 C 1.53076 * 117.49124 * 243.59985 * 16 15 3 19 19 C 1.52991 * 117.49972 * 175.00052 * 16 15 3 20 20 H 1.09003 * 117.50096 * 359.97102 * 19 16 15 21 21 C 1.53009 * 117.49910 * 214.97976 * 19 16 15 22 22 H 1.09002 * 109.46812 * 62.90174 * 1 2 3 23 23 H 1.08997 * 109.47260 * 182.89054 * 1 2 3 24 24 H 1.09001 * 109.47474 * 302.89980 * 1 2 3 25 25 H 1.08993 * 109.47435 * 239.99798 * 2 1 3 26 26 H 1.09008 * 109.46674 * 119.99617 * 2 1 3 27 27 H 1.09001 * 109.46940 * 48.35961 * 4 3 2 28 28 H 1.08996 * 109.47061 * 168.35479 * 4 3 2 29 29 H 1.09001 * 109.46639 * 300.33973 * 5 4 3 30 30 H 1.09000 * 109.46757 * 60.33902 * 5 4 3 31 31 H 1.09003 * 109.47159 * 300.00326 * 6 5 4 32 32 H 1.09003 * 109.46901 * 60.00050 * 6 5 4 33 33 H 0.96999 * 120.00116 * 180.02562 * 10 9 7 34 34 H 1.08994 * 109.47169 * 306.04150 * 15 3 2 35 35 H 1.09006 * 109.46374 * 186.04629 * 15 3 2 36 36 H 1.08999 * 117.51132 * 145.03166 * 18 16 15 37 37 H 1.08997 * 117.49397 * 359.97438 * 18 16 15 38 38 H 1.08996 * 109.46835 * 60.07940 * 21 19 16 39 39 H 1.09008 * 109.46427 * 300.08491 * 21 19 16 40 40 H 1.08999 * 109.47262 * 180.08886 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5750 2.1006 -1.2034 5 6 2.3381 1.5747 -2.4207 6 6 1.8811 2.3259 -3.6728 7 6 2.6332 1.8084 -4.8717 8 1 3.3645 1.0226 -4.7525 9 6 2.3886 2.3388 -6.1207 10 7 1.4985 3.2960 -6.2658 11 14 3.3215 1.6978 -7.6066 12 1 3.0503 0.2473 -7.7734 13 1 2.8777 2.4268 -8.8219 14 1 4.7776 1.9093 -7.4060 15 6 1.6004 2.0916 1.2178 16 6 2.2852 1.4635 2.4333 17 1 3.2598 1.0137 2.2437 18 6 1.3912 0.7979 3.4825 19 6 2.0689 2.1344 3.7911 20 1 1.4390 3.0236 3.8185 21 6 3.2372 2.1227 4.7791 22 1 -0.3633 0.4681 -0.9149 23 1 -0.3633 -1.0263 0.0518 24 1 -0.3634 0.5582 0.8628 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 0.5065 1.9402 -1.3473 28 1 1.7696 3.1664 -1.0850 29 1 3.4071 1.7296 -2.2740 30 1 2.1385 0.5101 -2.5425 31 1 0.8121 2.1711 -3.8194 32 1 2.0807 3.3905 -3.5509 33 1 1.3262 3.6689 -7.1445 34 1 0.5190 2.0132 1.3293 35 1 1.8830 3.1418 1.1439 36 1 1.7776 -0.0898 3.9832 37 1 0.3156 0.8081 3.3066 38 1 4.0911 2.6366 4.3379 39 1 3.5107 1.0922 5.0059 40 1 2.9418 2.6307 5.6971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698355965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:13 Heat of formation + Delta-G solvation = -13.303020 kcal Electronic energy + Delta-G solvation = -15574.365702 eV Core-core repulsion = 13195.364206 eV Total energy + Delta-G solvation = -2379.001496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.99770 -37.94927 -35.67732 -33.41658 -31.27355 -29.91131 -28.35513 -26.33883 -25.15839 -23.07692 -21.78901 -21.05354 -20.51578 -18.44721 -17.21034 -16.73501 -16.31708 -16.01741 -15.60396 -14.73558 -14.57264 -14.40305 -14.14595 -13.84185 -13.50474 -13.31205 -13.06090 -12.91824 -12.87098 -12.58405 -12.47400 -12.24188 -12.10755 -12.05185 -11.88165 -11.37115 -11.29030 -11.15968 -10.71897 -10.54734 -10.53821 -9.15808 -8.19627 -6.30780 1.39871 1.43438 1.51345 2.41350 2.80980 3.06087 3.13180 3.81632 3.99506 4.03259 4.13729 4.20038 4.34717 4.39595 4.46083 4.49767 4.56628 4.67232 4.75333 4.86996 4.92658 4.92799 4.95014 4.99536 5.04830 5.07004 5.17218 5.23294 5.25165 5.34544 5.40234 5.49820 5.54112 5.75627 5.86684 6.15210 6.27182 6.30663 6.85746 7.38277 8.92189 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050638 B = 0.004342 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.813447 B = 6446.561355 C = 6592.819636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.051 3.949 3 N -0.541 5.541 4 C 0.062 3.938 5 C -0.086 4.086 6 C 0.026 3.974 7 C -0.544 4.544 8 H 0.058 0.942 9 C -0.001 4.001 10 N -0.934 5.934 11 Si 0.966 3.034 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.082 3.918 16 C -0.147 4.147 17 H 0.102 0.898 18 C -0.170 4.170 19 C -0.151 4.151 20 H 0.103 0.897 21 C -0.120 4.120 22 H 0.040 0.960 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.033 0.967 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.048 0.952 31 H -0.010 1.010 32 H -0.010 1.010 33 H 0.264 0.736 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 -5.065 20.064 20.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.077 4.077 3 N -0.264 5.264 4 C -0.065 4.065 5 C -0.124 4.124 6 C -0.011 4.011 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.199 4.199 10 N -0.574 5.574 11 Si 0.790 3.210 12 H -0.191 1.191 13 H -0.207 1.207 14 H -0.192 1.192 15 C -0.045 4.045 16 C -0.165 4.165 17 H 0.120 0.880 18 C -0.207 4.207 19 C -0.169 4.169 20 H 0.121 0.879 21 C -0.177 4.177 22 H 0.059 0.941 23 H 0.092 0.908 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.008 0.992 32 H 0.009 0.991 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.159 -4.966 19.941 20.551 hybrid contribution -0.692 0.082 -1.167 1.359 sum -0.533 -4.884 18.774 19.406 Atomic orbital electron populations 1.22343 0.97951 1.02869 1.01316 1.22149 0.93267 0.89740 1.02558 1.62197 1.59857 1.02864 1.01524 1.22061 0.97083 0.97576 0.89811 1.21339 0.99065 0.98919 0.93049 1.18967 0.94820 0.94520 0.92822 1.21666 1.22574 1.20306 0.93631 0.92355 1.25997 0.96232 0.95171 1.02470 1.70092 1.35093 1.27833 1.24421 0.85491 0.79041 0.78684 0.77783 1.19131 1.20704 1.19160 1.21719 0.97122 0.97356 0.88328 1.22248 1.00668 1.04532 0.89073 0.88031 1.23265 0.98548 0.96339 1.02542 1.22467 1.01134 0.96861 0.96462 0.87904 1.21359 0.96217 1.02191 0.97977 0.94093 0.90845 0.91885 0.91902 0.89373 0.94875 0.92006 0.93304 0.93376 0.99196 0.99118 0.92751 0.94095 0.91420 0.88065 0.88923 0.92448 0.92246 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.59 9.27 71.98 0.67 -3.92 16 2 C 0.05 1.36 5.74 86.30 0.50 1.85 16 3 N -0.54 -16.30 4.67 -896.24 -4.18 -20.48 16 4 C 0.06 2.26 4.82 86.30 0.42 2.68 16 5 C -0.09 -3.75 5.19 30.59 0.16 -3.59 16 6 C 0.03 1.44 4.97 29.85 0.15 1.59 16 7 C -0.54 -32.04 9.11 25.60 0.23 -31.80 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 9 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 10 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 11 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 C 0.08 2.05 5.04 86.30 0.43 2.49 16 16 C -0.15 -3.04 4.48 -10.77 -0.05 -3.09 16 17 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 18 C -0.17 -2.85 9.83 30.62 0.30 -2.55 16 19 C -0.15 -2.58 6.12 -10.80 -0.07 -2.64 16 20 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 21 C -0.12 -1.74 10.19 71.99 0.73 -1.01 16 22 H 0.04 1.18 6.35 -2.39 -0.02 1.17 16 23 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.06 1.41 6.20 -2.39 -0.01 1.40 16 25 H 0.06 1.87 6.65 -2.39 -0.02 1.86 16 26 H 0.09 2.05 7.20 -2.38 -0.02 2.03 16 27 H 0.03 1.21 5.88 -2.39 -0.01 1.20 16 28 H 0.06 2.27 7.82 -2.39 -0.02 2.25 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.05 2.06 6.74 -2.39 -0.02 2.05 16 31 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.04 0.98 5.76 -2.39 -0.01 0.97 16 35 H 0.07 1.75 7.87 -2.38 -0.02 1.73 16 36 H 0.10 1.50 8.05 -2.39 -0.02 1.49 16 37 H 0.09 1.52 8.03 -2.39 -0.02 1.50 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 0.81 7.90 -2.38 -0.02 0.79 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -63.85 314.65 3.03 -60.81 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.97 Total: 9.86 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.94 Total: -39.61 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -3.90 Total: -78.26 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -63.85 3.03 -60.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698355965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.511 kcal (2) G-P(sol) polarization free energy of solvation -63.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds