Wall clock time and date at job start Mon Mar 30 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46906 * 109.47205 * 2 1 4 4 C 1.46896 * 110.99570 * 60.13510 * 3 2 1 5 5 C 1.53002 * 109.47501 * 66.04781 * 4 3 2 6 6 C 1.53003 * 109.47388 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47174 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00009 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99865 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00087 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99899 * 180.27817 * 9 7 6 12 12 H 1.48501 * 109.47034 * 179.72383 * 11 9 7 13 13 H 1.48497 * 109.47024 * 299.72174 * 11 9 7 14 14 H 1.48501 * 109.46988 * 59.72418 * 11 9 7 15 15 C 1.46893 * 110.99835 * 296.18036 * 3 2 1 16 16 C 1.52995 * 109.47280 * 288.06710 * 15 3 2 17 17 H 1.08998 * 115.55456 * 23.53808 * 16 15 3 18 18 C 1.53006 * 117.49718 * 237.87223 * 16 15 3 19 19 C 1.53000 * 117.49846 * 169.25026 * 16 15 3 20 20 H 1.09004 * 117.49735 * 214.97393 * 19 16 15 21 21 C 1.52996 * 117.50316 * 359.97438 * 19 16 15 22 22 H 1.09000 * 109.47835 * 300.52177 * 1 2 3 23 23 H 1.09004 * 109.47325 * 60.52131 * 1 2 3 24 24 H 1.09002 * 109.47370 * 180.51564 * 1 2 3 25 25 H 1.08997 * 109.47510 * 239.99995 * 2 1 3 26 26 H 1.09003 * 109.46749 * 119.99870 * 2 1 3 27 27 H 1.08998 * 109.47518 * 306.04447 * 4 3 2 28 28 H 1.09010 * 109.46946 * 186.04652 * 4 3 2 29 29 H 1.09005 * 109.46933 * 59.99742 * 5 4 3 30 30 H 1.08997 * 109.46902 * 299.99605 * 5 4 3 31 31 H 1.09004 * 109.46615 * 59.99784 * 6 5 4 32 32 H 1.09003 * 109.46824 * 300.00507 * 6 5 4 33 33 H 0.97002 * 119.99817 * 180.02562 * 10 9 7 34 34 H 1.09006 * 109.47186 * 48.07100 * 15 3 2 35 35 H 1.09006 * 109.46972 * 168.06489 * 15 3 2 36 36 H 1.08996 * 117.49955 * 359.97438 * 18 16 15 37 37 H 1.09000 * 117.49774 * 145.00200 * 18 16 15 38 38 H 1.09004 * 109.46974 * 60.00048 * 21 19 16 39 39 H 1.09000 * 109.47690 * 180.02562 * 21 19 16 40 40 H 1.09003 * 109.46846 * 300.00679 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5512 2.1089 1.1893 5 6 2.1856 1.4986 2.4407 6 6 1.6982 2.2529 3.6794 7 6 2.3226 1.6514 4.9119 8 1 2.9997 0.8149 4.8209 9 6 2.0294 2.1688 6.1558 10 7 1.2053 3.1877 6.2666 11 14 2.8095 1.4281 7.6831 12 1 2.3401 2.1633 8.8849 13 1 2.4208 -0.0009 7.7939 14 1 4.2875 1.5330 7.5845 15 6 1.6246 2.0830 -1.2307 16 6 2.4418 1.5449 -2.4069 17 1 2.8455 0.5406 -2.2786 18 6 3.2815 2.5476 -3.2010 19 6 2.0099 1.9586 -3.8151 20 1 2.1292 1.2263 -4.6136 21 6 0.7935 2.8782 -3.9395 22 1 -0.3635 0.5219 0.8852 23 1 -0.3634 0.5057 -0.8946 24 1 -0.3634 -1.0276 0.0092 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 0.4661 2.0319 1.2577 28 1 1.8368 3.1581 1.1120 29 1 3.2708 1.5756 2.3724 30 1 1.9000 0.4495 2.5180 31 1 0.6130 2.1762 3.7478 32 1 1.9841 3.3019 3.6017 33 1 0.9994 3.5520 7.1418 34 1 0.5640 1.9161 -1.4186 35 1 1.8099 3.1513 -1.1180 36 1 3.2514 3.5905 -2.8858 37 1 4.2375 2.2028 -3.5952 38 1 0.9885 3.8120 -3.4121 39 1 0.6026 3.0879 -4.9920 40 1 -0.0775 2.3895 -3.5029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698355967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:17 Heat of formation + Delta-G solvation = 4.926509 kcal Electronic energy + Delta-G solvation = -15670.963596 eV Core-core repulsion = 13292.752591 eV Total energy + Delta-G solvation = -2378.211004 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.96160 -36.96662 -33.64748 -31.45939 -30.03887 -28.63193 -27.16853 -25.13794 -23.63178 -21.72298 -20.93576 -19.42167 -18.90809 -16.45369 -16.11540 -15.70577 -14.84652 -14.41345 -14.31625 -13.84197 -13.13109 -12.91179 -12.88102 -12.63253 -12.24425 -12.02348 -11.79704 -11.56164 -11.44770 -11.29759 -10.99915 -10.77697 -10.63692 -10.49706 -10.41727 -9.93207 -9.79283 -9.49423 -9.25385 -9.00980 -8.29770 -7.90095 -5.95441 -3.97261 3.36574 3.40455 3.43406 3.68570 4.21772 4.50753 4.62612 4.84171 4.91301 5.18130 5.24636 5.34763 5.40307 5.49122 5.52843 5.64297 5.65239 5.67304 5.75898 5.79516 5.88397 5.89672 5.95745 6.06354 6.16913 6.21410 6.29832 6.42771 6.46012 6.78226 6.87341 7.19741 7.46656 7.50393 7.73565 7.89395 8.05484 8.49202 9.09835 9.66432 11.16031 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048423 B = 0.004517 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.098975 B = 6197.408228 C = 6285.353932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.048 3.952 3 N -0.535 5.535 4 C 0.052 3.948 5 C -0.104 4.104 6 C 0.022 3.978 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.892 3.108 12 H -0.288 1.288 13 H -0.277 1.277 14 H -0.277 1.277 15 C 0.080 3.920 16 C -0.135 4.135 17 H 0.106 0.894 18 C -0.173 4.173 19 C -0.161 4.161 20 H 0.099 0.901 21 C -0.122 4.122 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.013 0.987 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 -2.952 -18.590 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.080 4.080 3 N -0.258 5.258 4 C -0.075 4.075 5 C -0.142 4.142 6 C -0.016 4.016 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.719 3.281 12 H -0.213 1.213 13 H -0.203 1.203 14 H -0.202 1.202 15 C -0.048 4.048 16 C -0.153 4.153 17 H 0.124 0.876 18 C -0.210 4.210 19 C -0.180 4.180 20 H 0.117 0.883 21 C -0.179 4.179 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.083 -2.830 -18.435 18.651 hybrid contribution -0.481 -0.336 0.864 1.044 sum -0.564 -3.167 -17.570 17.862 Atomic orbital electron populations 1.22418 0.98734 1.02022 1.02081 1.22164 0.92652 0.90784 1.02420 1.62250 1.59513 1.02193 1.01812 1.22344 0.97588 0.97674 0.89892 1.21632 0.99902 0.99252 0.93376 1.19069 0.96243 0.95426 0.90820 1.21224 1.27010 1.15953 0.91415 0.92755 1.25023 0.95283 0.95078 0.99102 1.69959 1.35467 1.24351 1.23916 0.86667 0.79742 0.79223 0.82426 1.21336 1.20291 1.20222 1.21680 0.96519 0.97829 0.88724 1.22360 1.02253 0.99718 0.90998 0.87584 1.23127 0.94751 0.98948 1.04217 1.22389 0.96373 1.02497 0.96724 0.88259 1.21327 0.96518 0.98588 1.01480 0.91707 0.92932 0.92469 0.91470 0.90104 0.94826 0.91549 0.92712 0.93463 0.96908 0.96687 0.93030 0.94070 0.91173 0.88884 0.89165 0.92456 0.92486 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 9.27 37.15 0.34 -2.20 16 2 C 0.05 0.67 5.68 -3.83 -0.02 0.65 16 3 N -0.53 -8.23 4.67 -234.63 -1.10 -9.32 16 4 C 0.05 0.93 4.71 -3.82 -0.02 0.91 16 5 C -0.10 -2.21 5.08 -26.73 -0.14 -2.35 16 6 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 11 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.08 1.05 4.31 -3.83 -0.02 1.03 16 16 C -0.13 -1.54 5.65 -90.62 -0.51 -2.05 16 17 H 0.11 1.26 6.87 -51.93 -0.36 0.90 16 18 C -0.17 -1.80 9.82 -26.73 -0.26 -2.06 16 19 C -0.16 -1.56 6.41 -90.62 -0.58 -2.14 16 20 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 21 C -0.12 -1.09 9.15 37.16 0.34 -0.75 16 22 H 0.06 0.97 6.25 -51.93 -0.32 0.64 16 23 H 0.05 0.64 6.29 -51.93 -0.33 0.32 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.83 6.68 -51.93 -0.35 0.49 16 26 H 0.08 1.23 6.46 -51.93 -0.34 0.89 16 27 H 0.03 0.60 5.99 -51.93 -0.31 0.29 16 28 H 0.07 1.20 7.86 -51.92 -0.41 0.79 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.99 6.55 -51.93 -0.34 0.65 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.04 0.52 5.26 -51.93 -0.27 0.25 16 35 H 0.07 0.94 7.54 -51.93 -0.39 0.54 16 36 H 0.09 0.97 7.94 -51.93 -0.41 0.55 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.52 7.90 -51.93 -0.41 0.11 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16 LS Contribution 310.76 15.07 4.68 4.68 Total: -1.00 -29.88 310.76 -9.25 -39.12 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -7.14 Total: -2.53 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -1.41 Total: -22.28 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.36 Total: -35.99 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.88 -9.25 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698355967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.049 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds