Wall clock time and date at job start Mon Mar 30 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46906 * 109.47205 * 2 1 4 4 C 1.46896 * 110.99570 * 60.13510 * 3 2 1 5 5 C 1.53002 * 109.47501 * 66.04781 * 4 3 2 6 6 C 1.53003 * 109.47388 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47174 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00009 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99865 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00087 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99899 * 180.27817 * 9 7 6 12 12 H 1.48501 * 109.47034 * 179.72383 * 11 9 7 13 13 H 1.48497 * 109.47024 * 299.72174 * 11 9 7 14 14 H 1.48501 * 109.46988 * 59.72418 * 11 9 7 15 15 C 1.46893 * 110.99835 * 296.18036 * 3 2 1 16 16 C 1.52995 * 109.47280 * 288.06710 * 15 3 2 17 17 H 1.08998 * 115.55456 * 23.53808 * 16 15 3 18 18 C 1.53006 * 117.49718 * 237.87223 * 16 15 3 19 19 C 1.53000 * 117.49846 * 169.25026 * 16 15 3 20 20 H 1.09004 * 117.49735 * 214.97393 * 19 16 15 21 21 C 1.52996 * 117.50316 * 359.97438 * 19 16 15 22 22 H 1.09000 * 109.47835 * 300.52177 * 1 2 3 23 23 H 1.09004 * 109.47325 * 60.52131 * 1 2 3 24 24 H 1.09002 * 109.47370 * 180.51564 * 1 2 3 25 25 H 1.08997 * 109.47510 * 239.99995 * 2 1 3 26 26 H 1.09003 * 109.46749 * 119.99870 * 2 1 3 27 27 H 1.08998 * 109.47518 * 306.04447 * 4 3 2 28 28 H 1.09010 * 109.46946 * 186.04652 * 4 3 2 29 29 H 1.09005 * 109.46933 * 59.99742 * 5 4 3 30 30 H 1.08997 * 109.46902 * 299.99605 * 5 4 3 31 31 H 1.09004 * 109.46615 * 59.99784 * 6 5 4 32 32 H 1.09003 * 109.46824 * 300.00507 * 6 5 4 33 33 H 0.97002 * 119.99817 * 180.02562 * 10 9 7 34 34 H 1.09006 * 109.47186 * 48.07100 * 15 3 2 35 35 H 1.09006 * 109.46972 * 168.06489 * 15 3 2 36 36 H 1.08996 * 117.49955 * 359.97438 * 18 16 15 37 37 H 1.09000 * 117.49774 * 145.00200 * 18 16 15 38 38 H 1.09004 * 109.46974 * 60.00048 * 21 19 16 39 39 H 1.09000 * 109.47690 * 180.02562 * 21 19 16 40 40 H 1.09003 * 109.46846 * 300.00679 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5512 2.1089 1.1893 5 6 2.1856 1.4986 2.4407 6 6 1.6982 2.2529 3.6794 7 6 2.3226 1.6514 4.9119 8 1 2.9997 0.8149 4.8209 9 6 2.0294 2.1688 6.1558 10 7 1.2053 3.1877 6.2666 11 14 2.8095 1.4281 7.6831 12 1 2.3401 2.1633 8.8849 13 1 2.4208 -0.0009 7.7939 14 1 4.2875 1.5330 7.5845 15 6 1.6246 2.0830 -1.2307 16 6 2.4418 1.5449 -2.4069 17 1 2.8455 0.5406 -2.2786 18 6 3.2815 2.5476 -3.2010 19 6 2.0099 1.9586 -3.8151 20 1 2.1292 1.2263 -4.6136 21 6 0.7935 2.8782 -3.9395 22 1 -0.3635 0.5219 0.8852 23 1 -0.3634 0.5057 -0.8946 24 1 -0.3634 -1.0276 0.0092 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 0.4661 2.0319 1.2577 28 1 1.8368 3.1581 1.1120 29 1 3.2708 1.5756 2.3724 30 1 1.9000 0.4495 2.5180 31 1 0.6130 2.1762 3.7478 32 1 1.9841 3.3019 3.6017 33 1 0.9994 3.5520 7.1418 34 1 0.5640 1.9161 -1.4186 35 1 1.8099 3.1513 -1.1180 36 1 3.2514 3.5905 -2.8858 37 1 4.2375 2.2028 -3.5952 38 1 0.9885 3.8120 -3.4121 39 1 0.6026 3.0879 -4.9920 40 1 -0.0775 2.3895 -3.5029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698355967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:17 Heat of formation + Delta-G solvation = -11.777977 kcal Electronic energy + Delta-G solvation = -15671.687956 eV Core-core repulsion = 13292.752591 eV Total energy + Delta-G solvation = -2378.935365 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.02431 -38.04335 -35.66676 -33.38754 -31.16174 -29.58545 -28.69913 -26.53479 -25.20201 -23.11863 -22.08974 -20.89432 -19.86695 -18.46059 -17.35680 -16.97499 -16.48106 -15.94182 -15.46441 -15.03749 -14.46515 -14.41924 -13.94565 -13.78936 -13.51563 -13.45787 -13.05204 -12.96888 -12.78359 -12.60085 -12.47345 -12.31256 -12.09168 -12.01669 -11.84715 -11.37179 -11.30048 -11.11488 -10.73241 -10.56096 -10.52778 -9.12806 -8.19498 -6.30636 1.39985 1.43481 1.51374 2.41405 2.79713 3.11490 3.13417 3.78131 3.97441 4.02213 4.13669 4.23013 4.33070 4.39741 4.47362 4.50822 4.59040 4.64079 4.73978 4.77845 4.90318 4.93869 4.97875 5.00796 5.05464 5.06595 5.17221 5.20829 5.25212 5.34869 5.40133 5.47037 5.54049 5.75539 5.86577 6.15230 6.26559 6.30763 6.85822 7.38479 8.92307 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048423 B = 0.004517 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.098975 B = 6197.408228 C = 6285.353932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.047 3.953 3 N -0.542 5.542 4 C 0.064 3.936 5 C -0.087 4.087 6 C 0.027 3.973 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.000 4.000 10 N -0.934 5.934 11 Si 0.965 3.035 12 H -0.282 1.282 13 H -0.266 1.266 14 H -0.267 1.267 15 C 0.084 3.916 16 C -0.148 4.148 17 H 0.104 0.896 18 C -0.176 4.176 19 C -0.146 4.146 20 H 0.113 0.887 21 C -0.124 4.124 22 H 0.041 0.959 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.032 0.968 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.050 0.950 31 H -0.010 1.010 32 H -0.010 1.010 33 H 0.264 0.736 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 -4.036 -19.604 20.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.081 4.081 3 N -0.265 5.265 4 C -0.064 4.064 5 C -0.125 4.125 6 C -0.011 4.011 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.198 4.198 10 N -0.574 5.574 11 Si 0.790 3.210 12 H -0.207 1.207 13 H -0.191 1.191 14 H -0.192 1.192 15 C -0.043 4.043 16 C -0.166 4.166 17 H 0.122 0.878 18 C -0.213 4.213 19 C -0.165 4.165 20 H 0.131 0.869 21 C -0.181 4.181 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.383 -3.923 -19.471 19.866 hybrid contribution -0.640 0.022 1.134 1.302 sum -0.258 -3.901 -18.337 18.749 Atomic orbital electron populations 1.22349 0.97977 1.02867 1.01433 1.22207 0.93278 0.89864 1.02730 1.62187 1.59823 1.02827 1.01643 1.22050 0.97112 0.97371 0.89842 1.21365 0.99413 0.98829 0.92903 1.18964 0.94696 0.94576 0.92872 1.21658 1.27429 1.16369 0.92691 0.92348 1.25987 0.95654 0.95397 1.02764 1.70093 1.36690 1.25672 1.24968 0.85500 0.79007 0.78686 0.77857 1.20707 1.19116 1.19198 1.21673 0.97189 0.97309 0.88140 1.22265 1.03238 0.99819 0.91315 0.87782 1.23194 0.95576 0.98540 1.04004 1.22481 0.96097 1.02252 0.95637 0.86855 1.21364 0.96129 0.98172 1.02447 0.94004 0.91852 0.90878 0.89338 0.91575 0.95003 0.92065 0.93311 0.93146 0.99190 0.99155 0.92760 0.93558 0.91832 0.89225 0.88299 0.92983 0.90993 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.69 9.27 71.98 0.67 -4.02 16 2 C 0.05 1.26 5.68 86.30 0.49 1.75 16 3 N -0.54 -16.31 4.67 -896.24 -4.18 -20.49 16 4 C 0.06 2.32 4.71 86.30 0.41 2.73 16 5 C -0.09 -3.79 5.08 30.60 0.16 -3.64 16 6 C 0.03 1.45 4.97 29.85 0.15 1.60 16 7 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 10 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 11 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 15 C 0.08 2.11 4.31 86.30 0.37 2.48 16 16 C -0.15 -3.12 5.65 -10.79 -0.06 -3.18 16 17 H 0.10 2.25 6.87 -2.39 -0.02 2.23 16 18 C -0.18 -3.33 9.82 30.60 0.30 -3.03 16 19 C -0.15 -2.47 6.41 -10.79 -0.07 -2.54 16 20 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 21 C -0.12 -1.94 9.15 71.98 0.66 -1.28 16 22 H 0.04 1.23 6.25 -2.39 -0.01 1.22 16 23 H 0.06 1.43 6.29 -2.38 -0.01 1.42 16 24 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.09 2.01 6.68 -2.39 -0.02 1.99 16 26 H 0.07 1.96 6.46 -2.39 -0.02 1.95 16 27 H 0.03 1.17 5.99 -2.39 -0.01 1.15 16 28 H 0.06 2.26 7.86 -2.38 -0.02 2.24 16 29 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.05 2.14 6.55 -2.39 -0.02 2.12 16 31 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.05 1.11 5.26 -2.38 -0.01 1.10 16 35 H 0.06 1.66 7.54 -2.38 -0.02 1.64 16 36 H 0.09 1.75 7.94 -2.39 -0.02 1.73 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.05 0.87 7.90 -2.38 -0.02 0.85 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 0.92 7.68 -2.39 -0.02 0.90 16 Total: -1.00 -63.84 310.76 2.87 -60.97 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.98 Total: 10.49 kcal Atomic # 6 Polarization: -44.16 SS G_CDS: 3.76 Total: -40.39 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -3.90 Total: -78.15 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -63.84 2.87 -60.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698355967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.190 kcal (2) G-P(sol) polarization free energy of solvation -63.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds