Wall clock time and date at job start Mon Mar 30 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47223 * 2 1 4 4 C 1.46900 * 111.00073 * 61.97431 * 3 2 1 5 5 C 1.53000 * 109.46991 * 66.83651 * 4 3 2 6 6 H 1.09004 * 115.54848 * 78.52507 * 5 4 3 7 7 C 1.52999 * 117.49966 * 292.85294 * 5 4 3 8 8 C 1.52999 * 117.49824 * 224.22911 * 5 4 3 9 9 H 1.09001 * 117.50025 * 214.97739 * 8 5 4 10 10 C 1.52991 * 117.49964 * 0.02562 * 8 5 4 11 11 C 1.46902 * 111.00118 * 298.02274 * 3 2 1 12 12 H 1.08997 * 109.47347 * 64.98237 * 11 3 2 13 13 C 1.53000 * 109.47205 * 184.98332 * 11 3 2 14 14 C 1.53005 * 109.46833 * 304.98282 * 11 3 2 15 15 C 1.50703 * 109.46843 * 170.17432 * 14 11 3 16 16 H 1.07999 * 120.00104 * 355.62224 * 15 14 11 17 17 C 1.37880 * 119.99951 * 175.34305 * 15 14 11 18 18 N 1.31515 * 119.99943 * 0.28161 * 17 15 14 19 19 Si 1.86794 * 120.00022 * 180.27647 * 17 15 14 20 20 H 1.48503 * 109.47249 * 60.00159 * 19 17 15 21 21 H 1.48506 * 109.47311 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47181 * 300.00162 * 19 17 15 23 23 H 1.09001 * 109.46783 * 305.08900 * 1 2 3 24 24 H 1.08997 * 109.47204 * 65.08970 * 1 2 3 25 25 H 1.09002 * 109.47412 * 185.08937 * 1 2 3 26 26 H 1.09006 * 109.47342 * 240.00350 * 2 1 3 27 27 H 1.08998 * 109.47441 * 120.00381 * 2 1 3 28 28 H 1.09000 * 109.47093 * 186.83530 * 4 3 2 29 29 H 1.08997 * 109.46927 * 306.83832 * 4 3 2 30 30 H 1.09001 * 117.49500 * 0.02562 * 7 5 4 31 31 H 1.09003 * 117.49648 * 144.99518 * 7 5 4 32 32 H 1.08994 * 109.47681 * 59.99829 * 10 8 5 33 33 H 1.08999 * 109.47022 * 180.02562 * 10 8 5 34 34 H 1.09000 * 109.46941 * 299.99300 * 10 8 5 35 35 H 1.08995 * 109.47215 * 299.99633 * 13 11 3 36 36 H 1.09005 * 109.47302 * 60.00327 * 13 11 3 37 37 H 1.09008 * 109.47067 * 179.97438 * 13 11 3 38 38 H 1.08997 * 109.47263 * 50.17640 * 14 11 3 39 39 H 1.08993 * 109.47179 * 290.17365 * 14 11 3 40 40 H 0.97000 * 120.00075 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5876 2.0961 1.2106 5 6 2.2747 1.4852 2.4335 6 1 3.3099 1.7880 2.5914 7 6 1.8903 0.0553 2.8190 8 6 1.4153 1.2321 3.6738 9 1 1.8849 1.3684 4.6479 10 6 -0.0655 1.6087 3.5960 11 6 1.5877 2.0961 -1.2106 12 1 0.5016 2.1879 -1.2101 13 6 2.2173 3.4903 -1.2352 14 6 2.0327 1.3136 -2.4479 15 6 1.3892 1.9059 -3.6751 16 1 0.6745 2.7095 -3.5757 17 6 1.7171 1.4258 -4.9253 18 7 2.5874 0.4472 -5.0465 19 14 0.9252 2.1651 -6.4470 20 1 1.2514 3.6120 -6.5215 21 1 1.4421 1.4778 -7.6577 22 1 -0.5479 1.9931 -6.3717 23 1 -0.3633 0.5908 0.8409 24 1 -0.3633 0.4328 -0.9320 25 1 -0.3634 -1.0236 0.0912 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8585 3.1488 1.1298 29 1 0.5067 2.0063 1.3185 30 1 1.1482 -0.4502 2.2011 31 1 2.6726 -0.5826 3.2305 32 1 -0.5425 1.0441 2.7950 33 1 -0.5501 1.3752 4.5440 34 1 -0.1588 2.6757 3.3939 35 1 1.9003 4.0477 -0.3539 36 1 3.3035 3.3985 -1.2359 37 1 1.8971 4.0178 -2.1338 38 1 1.7309 0.2712 -2.3465 39 1 3.1170 1.3703 -2.5430 40 1 2.8178 0.1092 -5.9260 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698358948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:37 Heat of formation + Delta-G solvation = 25.302418 kcal Electronic energy + Delta-G solvation = -16510.974236 eV Core-core repulsion = 14133.646797 eV Total energy + Delta-G solvation = -2377.327438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.30561 -36.59624 -33.09963 -31.40892 -29.75774 -28.40990 -26.70280 -25.89680 -23.18414 -22.02497 -21.33579 -19.08460 -18.23897 -16.58822 -16.15333 -15.03037 -14.77480 -14.49668 -13.70976 -13.69507 -13.09707 -12.94121 -12.52950 -12.20947 -12.02762 -11.69660 -11.60825 -11.40624 -11.22399 -11.05551 -10.91673 -10.76455 -10.67569 -10.32727 -10.22687 -9.83730 -9.69424 -9.38655 -9.05604 -9.00141 -8.27872 -7.48692 -5.95966 -3.97239 3.34640 3.39341 3.41409 3.79925 4.46398 4.67035 4.80792 4.99976 5.11413 5.29924 5.39363 5.44512 5.63400 5.75614 5.76533 5.80582 5.83379 5.90993 5.97822 5.99629 6.03003 6.19551 6.26755 6.29564 6.37612 6.40999 6.46868 6.59221 6.79373 6.83820 7.01813 7.17794 7.64202 7.76758 7.90086 7.96466 8.15099 8.49663 9.09249 9.65423 11.15307 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.047581 B = 0.006157 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.332691 B = 4546.935586 C = 4652.062333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.029 3.971 3 N -0.528 5.528 4 C 0.070 3.930 5 C -0.132 4.132 6 H 0.102 0.898 7 C -0.184 4.184 8 C -0.160 4.160 9 H 0.098 0.902 10 C -0.123 4.123 11 C 0.083 3.917 12 H 0.028 0.972 13 C -0.131 4.131 14 C 0.030 3.970 15 C -0.516 4.516 16 H 0.052 0.948 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.020 0.980 39 H 0.025 0.975 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 1.071 14.850 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.099 4.099 3 N -0.251 5.251 4 C -0.058 4.058 5 C -0.150 4.150 6 H 0.120 0.880 7 C -0.221 4.221 8 C -0.179 4.179 9 H 0.116 0.884 10 C -0.180 4.180 11 C -0.024 4.024 12 H 0.046 0.954 13 C -0.189 4.189 14 C -0.007 4.007 15 C -0.555 4.555 16 H 0.070 0.930 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.204 1.204 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.043 0.957 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.431 0.962 14.694 14.925 hybrid contribution -1.242 0.361 -0.931 1.593 sum -3.672 1.323 13.764 14.306 Atomic orbital electron populations 1.22453 0.99325 1.01245 1.02143 1.22625 0.92328 0.91380 1.03517 1.62230 1.59523 1.01900 1.01479 1.21762 0.96831 0.98219 0.88969 1.22314 0.99318 0.98601 0.94808 0.87973 1.23386 1.03999 0.91579 1.03101 1.22381 0.95946 1.04148 0.95447 0.88383 1.21369 0.93774 1.01364 1.01447 1.21830 0.96182 0.94153 0.90207 0.95402 1.21781 1.01069 0.96103 0.99933 1.19215 0.97385 0.94810 0.89279 1.21171 1.24401 1.18702 0.91235 0.92951 1.24973 0.95209 0.95146 0.98927 1.69960 1.33176 1.26629 1.23541 0.86712 0.79612 0.79361 0.82616 1.20287 1.21332 1.20392 0.93220 0.91621 0.93030 0.89632 0.89965 0.90583 0.94433 0.87482 0.89266 0.92409 0.92641 0.92315 0.94949 0.92768 0.91816 0.96226 0.95661 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.12 8.45 37.16 0.31 -2.80 16 2 C 0.03 0.51 5.07 -3.83 -0.02 0.49 16 3 N -0.53 -9.68 4.57 -226.65 -1.04 -10.71 16 4 C 0.07 1.07 4.79 -3.82 -0.02 1.05 16 5 C -0.13 -1.74 5.94 -90.62 -0.54 -2.28 16 6 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 7 C -0.18 -2.23 7.94 -26.73 -0.21 -2.45 16 8 C -0.16 -1.79 6.41 -90.62 -0.58 -2.37 16 9 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 10 C -0.12 -1.29 8.72 37.15 0.32 -0.96 16 11 C 0.08 1.76 1.57 -67.71 -0.11 1.65 16 12 H 0.03 0.61 6.70 -51.93 -0.35 0.26 16 13 C -0.13 -2.57 8.86 37.16 0.33 -2.24 16 14 C 0.03 0.78 4.33 -27.88 -0.12 0.66 16 15 C -0.52 -14.46 8.38 -34.44 -0.29 -14.75 16 16 H 0.05 1.43 7.54 -52.49 -0.40 1.04 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 19 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.05 0.73 4.62 -51.93 -0.24 0.49 16 24 H 0.06 1.22 6.83 -51.93 -0.35 0.87 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 1.72 5.90 -51.93 -0.31 1.42 16 27 H 0.08 1.27 4.12 -51.93 -0.21 1.05 16 28 H 0.08 1.17 5.84 -51.93 -0.30 0.86 16 29 H 0.04 0.57 4.05 -51.93 -0.21 0.36 16 30 H 0.11 1.36 4.96 -51.93 -0.26 1.11 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.65 6.02 -51.93 -0.31 0.34 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.03 0.54 6.21 -51.93 -0.32 0.22 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.31 7.40 -51.92 -0.38 0.92 16 38 H 0.02 0.53 5.76 -51.93 -0.30 0.23 16 39 H 0.02 0.71 8.11 -51.93 -0.42 0.29 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 293.97 15.07 4.43 4.43 Total: -1.00 -29.06 293.97 -8.37 -37.42 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.46 Total: 0.74 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -1.01 Total: -22.43 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.30 Total: -36.85 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.06 -8.37 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698358948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.725 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds