Wall clock time and date at job start Mon Mar 30 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47223 * 2 1 4 4 C 1.46900 * 111.00073 * 61.97431 * 3 2 1 5 5 C 1.53000 * 109.46991 * 66.83651 * 4 3 2 6 6 H 1.09004 * 115.54848 * 78.52507 * 5 4 3 7 7 C 1.52999 * 117.49966 * 292.85294 * 5 4 3 8 8 C 1.52999 * 117.49824 * 224.22911 * 5 4 3 9 9 H 1.09001 * 117.50025 * 214.97739 * 8 5 4 10 10 C 1.52991 * 117.49964 * 0.02562 * 8 5 4 11 11 C 1.46902 * 111.00118 * 298.02274 * 3 2 1 12 12 H 1.08997 * 109.47347 * 64.98237 * 11 3 2 13 13 C 1.53000 * 109.47205 * 184.98332 * 11 3 2 14 14 C 1.53005 * 109.46833 * 304.98282 * 11 3 2 15 15 C 1.50703 * 109.46843 * 170.17432 * 14 11 3 16 16 H 1.07999 * 120.00104 * 355.62224 * 15 14 11 17 17 C 1.37880 * 119.99951 * 175.34305 * 15 14 11 18 18 N 1.31515 * 119.99943 * 0.28161 * 17 15 14 19 19 Si 1.86794 * 120.00022 * 180.27647 * 17 15 14 20 20 H 1.48503 * 109.47249 * 60.00159 * 19 17 15 21 21 H 1.48506 * 109.47311 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47181 * 300.00162 * 19 17 15 23 23 H 1.09001 * 109.46783 * 305.08900 * 1 2 3 24 24 H 1.08997 * 109.47204 * 65.08970 * 1 2 3 25 25 H 1.09002 * 109.47412 * 185.08937 * 1 2 3 26 26 H 1.09006 * 109.47342 * 240.00350 * 2 1 3 27 27 H 1.08998 * 109.47441 * 120.00381 * 2 1 3 28 28 H 1.09000 * 109.47093 * 186.83530 * 4 3 2 29 29 H 1.08997 * 109.46927 * 306.83832 * 4 3 2 30 30 H 1.09001 * 117.49500 * 0.02562 * 7 5 4 31 31 H 1.09003 * 117.49648 * 144.99518 * 7 5 4 32 32 H 1.08994 * 109.47681 * 59.99829 * 10 8 5 33 33 H 1.08999 * 109.47022 * 180.02562 * 10 8 5 34 34 H 1.09000 * 109.46941 * 299.99300 * 10 8 5 35 35 H 1.08995 * 109.47215 * 299.99633 * 13 11 3 36 36 H 1.09005 * 109.47302 * 60.00327 * 13 11 3 37 37 H 1.09008 * 109.47067 * 179.97438 * 13 11 3 38 38 H 1.08997 * 109.47263 * 50.17640 * 14 11 3 39 39 H 1.08993 * 109.47179 * 290.17365 * 14 11 3 40 40 H 0.97000 * 120.00075 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5876 2.0961 1.2106 5 6 2.2747 1.4852 2.4335 6 1 3.3099 1.7880 2.5914 7 6 1.8903 0.0553 2.8190 8 6 1.4153 1.2321 3.6738 9 1 1.8849 1.3684 4.6479 10 6 -0.0655 1.6087 3.5960 11 6 1.5877 2.0961 -1.2106 12 1 0.5016 2.1879 -1.2101 13 6 2.2173 3.4903 -1.2352 14 6 2.0327 1.3136 -2.4479 15 6 1.3892 1.9059 -3.6751 16 1 0.6745 2.7095 -3.5757 17 6 1.7171 1.4258 -4.9253 18 7 2.5874 0.4472 -5.0465 19 14 0.9252 2.1651 -6.4470 20 1 1.2514 3.6120 -6.5215 21 1 1.4421 1.4778 -7.6577 22 1 -0.5479 1.9931 -6.3717 23 1 -0.3633 0.5908 0.8409 24 1 -0.3633 0.4328 -0.9320 25 1 -0.3634 -1.0236 0.0912 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8585 3.1488 1.1298 29 1 0.5067 2.0063 1.3185 30 1 1.1482 -0.4502 2.2011 31 1 2.6726 -0.5826 3.2305 32 1 -0.5425 1.0441 2.7950 33 1 -0.5501 1.3752 4.5440 34 1 -0.1588 2.6757 3.3939 35 1 1.9003 4.0477 -0.3539 36 1 3.3035 3.3985 -1.2359 37 1 1.8971 4.0178 -2.1338 38 1 1.7309 0.2712 -2.3465 39 1 3.1170 1.3703 -2.5430 40 1 2.8178 0.1092 -5.9260 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698358948.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:37 Heat of formation + Delta-G solvation = 8.377889 kcal Electronic energy + Delta-G solvation = -16511.708139 eV Core-core repulsion = 14133.646797 eV Total energy + Delta-G solvation = -2378.061341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.57066 -37.90815 -35.10658 -33.12797 -31.23412 -29.38113 -28.49109 -27.33870 -25.04939 -23.55032 -22.36731 -20.39356 -19.65460 -18.65443 -17.31059 -16.54582 -16.47283 -16.19778 -15.14136 -14.99768 -14.35045 -14.11352 -13.97465 -13.80094 -13.41650 -13.26045 -13.05488 -13.03841 -12.73951 -12.51022 -12.47840 -12.26776 -12.14005 -12.02367 -11.60960 -11.41925 -11.22769 -11.06440 -10.59061 -10.50324 -10.38573 -8.96015 -8.16584 -6.25963 1.39558 1.42230 1.49958 2.41133 2.76096 3.16606 3.38302 3.86082 3.96070 4.06067 4.19710 4.29528 4.33073 4.45657 4.50166 4.54612 4.58914 4.67012 4.75484 4.87839 4.93915 4.98346 5.01143 5.11144 5.14918 5.21211 5.23165 5.27902 5.29399 5.43677 5.44422 5.50073 5.58624 5.79438 5.82943 6.17674 6.46871 6.48742 6.90441 7.41673 8.95232 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.047581 B = 0.006157 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.332691 B = 4546.935586 C = 4652.062333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.031 3.969 3 N -0.538 5.538 4 C 0.073 3.927 5 C -0.149 4.149 6 H 0.102 0.898 7 C -0.189 4.189 8 C -0.139 4.139 9 H 0.116 0.884 10 C -0.125 4.125 11 C 0.095 3.905 12 H 0.022 0.978 13 C -0.125 4.125 14 C 0.040 3.960 15 C -0.532 4.532 16 H 0.057 0.943 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.960 3.040 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.269 1.269 23 H 0.068 0.932 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.050 0.950 38 H -0.002 1.002 39 H -0.012 1.012 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.135 1.905 16.388 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.097 4.097 3 N -0.261 5.261 4 C -0.054 4.054 5 C -0.167 4.167 6 H 0.120 0.880 7 C -0.225 4.225 8 C -0.157 4.157 9 H 0.134 0.866 10 C -0.182 4.182 11 C -0.013 4.013 12 H 0.040 0.960 13 C -0.182 4.182 14 C 0.003 3.997 15 C -0.571 4.571 16 H 0.075 0.925 17 C -0.195 4.195 18 N -0.573 5.573 19 Si 0.785 3.215 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.194 1.194 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.016 0.984 39 H 0.006 0.994 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.530 1.804 16.252 16.728 hybrid contribution -0.882 0.061 -1.340 1.606 sum -4.412 1.865 14.911 15.662 Atomic orbital electron populations 1.22345 0.98141 1.02473 1.01209 1.22606 0.93295 0.90917 1.02844 1.62180 1.60009 1.02295 1.01662 1.21792 0.97380 0.98040 0.88208 1.22236 0.99688 0.99672 0.95128 0.88031 1.23418 1.04240 0.91401 1.03483 1.22476 0.96024 1.02072 0.95172 0.86562 1.21414 0.93293 1.01346 1.02162 1.21513 0.95667 0.94450 0.89687 0.96014 1.21696 1.00325 0.95330 1.00864 1.19026 0.94730 0.94429 0.91499 1.21553 1.24456 1.18743 0.92302 0.92506 1.25893 0.95703 0.95490 1.02450 1.70105 1.34676 1.28107 1.24386 0.85584 0.78881 0.78807 0.78273 1.19186 1.20950 1.19369 0.91360 0.94652 0.91278 0.93342 0.87501 0.90507 0.93861 0.88123 0.88209 0.93314 0.90813 0.92111 0.91638 0.93638 0.93125 0.98356 0.99367 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.83 8.45 71.98 0.61 -5.22 16 2 C 0.03 1.08 5.07 86.30 0.44 1.52 16 3 N -0.54 -19.73 4.57 -870.98 -3.98 -23.71 16 4 C 0.07 2.11 4.79 86.30 0.41 2.52 16 5 C -0.15 -3.60 5.94 -10.79 -0.06 -3.66 16 6 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 7 C -0.19 -4.11 7.94 30.59 0.24 -3.87 16 8 C -0.14 -2.65 6.41 -10.80 -0.07 -2.72 16 9 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 10 C -0.13 -2.23 8.72 71.98 0.63 -1.60 16 11 C 0.09 4.05 1.57 44.92 0.07 4.12 16 12 H 0.02 0.96 6.70 -2.39 -0.02 0.95 16 13 C -0.12 -4.86 8.86 71.98 0.64 -4.22 16 14 C 0.04 2.18 4.33 29.85 0.13 2.31 16 15 C -0.53 -30.52 8.38 25.60 0.21 -30.31 16 16 H 0.06 3.14 7.54 -2.91 -0.02 3.11 16 17 C 0.00 0.13 5.46 84.66 0.46 0.60 16 18 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 19 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H 0.07 1.90 4.62 -2.39 -0.01 1.89 16 24 H 0.03 1.33 6.83 -2.39 -0.02 1.31 16 25 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 26 H 0.05 2.06 5.90 -2.38 -0.01 2.04 16 27 H 0.11 3.21 4.12 -2.39 -0.01 3.20 16 28 H 0.08 2.20 5.84 -2.39 -0.01 2.19 16 29 H 0.04 1.21 4.05 -2.39 -0.01 1.20 16 30 H 0.10 2.33 4.96 -2.39 -0.01 2.32 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.05 0.96 6.02 -2.39 -0.01 0.94 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.07 8.11 -2.39 -0.02 1.05 16 35 H 0.06 2.09 6.21 -2.39 -0.01 2.08 16 36 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.05 2.07 7.40 -2.38 -0.02 2.06 16 38 H 0.00 -0.10 5.76 -2.39 -0.01 -0.11 16 39 H -0.01 -0.74 8.11 -2.39 -0.02 -0.76 16 40 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -63.74 293.97 3.05 -60.69 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 1.01 Total: 14.06 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 3.71 Total: -40.52 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -3.70 Total: -81.09 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -63.74 3.05 -60.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698358948.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.066 kcal (2) G-P(sol) polarization free energy of solvation -63.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds