Wall clock time and date at job start Mon Mar 30 2020 02:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47081 * 2 1 4 4 C 1.50697 * 109.47133 * 240.00664 * 2 1 3 5 5 H 1.07999 * 120.00158 * 245.34714 * 4 2 1 6 6 C 1.37881 * 120.00462 * 65.34486 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.14741 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.14791 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 N 1.46896 * 109.47556 * 120.00317 * 2 1 3 13 13 C 1.46896 * 110.99854 * 275.00478 * 12 2 1 14 14 C 1.53000 * 109.47151 * 179.97438 * 13 12 2 15 15 H 1.08998 * 115.55017 * 330.72012 * 14 13 12 16 16 C 1.53002 * 117.50147 * 116.39009 * 14 13 12 17 17 C 1.52999 * 60.00283 * 107.49160 * 16 14 13 18 18 H 1.08996 * 117.49960 * 252.51489 * 17 16 14 19 19 C 1.52995 * 117.49755 * 107.48849 * 17 16 14 20 20 C 1.52996 * 109.47692 * 351.38096 * 19 17 16 21 21 C 1.53009 * 109.46920 * 111.38258 * 19 17 16 22 22 C 1.53002 * 109.46974 * 231.37579 * 19 17 16 23 23 H 1.08997 * 109.46775 * 174.97312 * 1 2 3 24 24 H 1.08998 * 109.47127 * 294.96848 * 1 2 3 25 25 H 1.09000 * 109.47159 * 54.97607 * 1 2 3 26 26 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 27 27 H 1.00903 * 110.99547 * 38.95045 * 12 2 1 28 28 H 1.09005 * 109.47356 * 299.99392 * 13 12 2 29 29 H 1.08995 * 109.47718 * 59.99542 * 13 12 2 30 30 H 1.09005 * 117.49751 * 214.98474 * 16 14 13 31 31 H 1.09002 * 117.49526 * 359.97274 * 16 14 13 32 32 H 1.09001 * 109.47192 * 59.99601 * 20 19 17 33 33 H 1.08994 * 109.47566 * 180.02562 * 20 19 17 34 34 H 1.09002 * 109.46729 * 299.99702 * 20 19 17 35 35 H 1.08997 * 109.46773 * 59.99469 * 21 19 17 36 36 H 1.08994 * 109.46939 * 179.97438 * 21 19 17 37 37 H 1.09001 * 109.46729 * 299.99643 * 21 19 17 38 38 H 1.08995 * 109.47334 * 60.00798 * 22 19 17 39 39 H 1.09002 * 109.46904 * 180.02562 * 22 19 17 40 40 H 1.08995 * 109.47508 * 300.00455 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2305 5 1 2.5802 -1.6360 -1.1339 6 6 1.7926 -0.1784 -2.4798 7 7 1.2152 0.9978 -2.5939 8 14 2.2878 -1.1283 -4.0101 9 1 1.2111 -2.0864 -4.3680 10 1 2.5007 -0.1807 -5.1336 11 1 3.5451 -1.8727 -3.7455 12 7 2.0198 -0.6925 1.1993 13 6 2.0825 0.2225 2.3468 14 6 2.5952 -0.5333 3.5743 15 1 2.3637 -1.5981 3.6014 16 6 3.9297 -0.0851 4.1735 17 6 2.6216 0.2184 4.9068 18 1 2.2737 1.2514 4.9088 19 6 2.3208 -0.5820 6.1755 20 6 3.3480 -1.7060 6.3251 21 6 2.3962 0.3430 7.3919 22 6 0.9173 -1.1833 6.0783 23 1 -0.3633 -1.0237 -0.0900 24 1 -0.3633 0.4338 0.9316 25 1 -0.3633 0.5898 -0.8416 26 1 1.0462 1.3718 -3.4728 27 1 1.4496 -1.4980 1.4099 28 1 2.7589 1.0462 2.1182 29 1 1.0872 0.6162 2.5525 30 1 4.5761 -0.8550 4.5950 31 1 4.4427 0.7480 3.6929 32 1 4.3479 -1.2775 6.3942 33 1 3.1335 -2.2764 7.2287 34 1 3.2942 -2.3650 5.4585 35 1 1.6644 1.1438 7.2853 36 1 2.1815 -0.2271 8.2957 37 1 3.3961 0.7715 7.4611 38 1 0.8635 -1.8423 5.2119 39 1 0.7029 -1.7532 6.9824 40 1 0.1855 -0.3826 5.9718 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699760558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:50 Heat of formation + Delta-G solvation = -0.404342 kcal Electronic energy + Delta-G solvation = -15801.091277 eV Core-core repulsion = 13422.649110 eV Total energy + Delta-G solvation = -2378.442167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.17235 -35.98871 -33.99056 -32.08025 -28.76400 -27.38820 -27.30198 -25.15167 -24.34179 -22.71491 -20.35137 -20.07626 -18.26199 -16.32960 -15.74111 -14.83848 -14.44449 -14.19788 -14.05910 -13.56859 -13.30597 -12.90312 -12.42817 -12.36542 -12.06128 -11.70963 -11.68179 -11.49654 -11.18281 -10.99649 -10.93281 -10.85705 -10.75705 -10.58371 -10.42069 -10.16293 -9.92192 -9.60265 -9.33080 -8.95466 -8.31465 -7.15183 -5.95503 -3.96093 3.36017 3.41673 3.46090 4.01209 4.47654 4.61305 4.81504 4.97030 5.15068 5.22518 5.33425 5.37559 5.51721 5.57567 5.64369 5.72171 5.77917 5.86885 5.87908 5.88787 6.01355 6.05225 6.15425 6.20707 6.31462 6.33493 6.36642 6.46689 6.68668 6.72205 6.83911 7.09290 7.42320 7.66241 7.93142 8.28503 8.61783 8.68486 9.10779 9.68091 11.13779 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.052554 B = 0.004847 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.660908 B = 5775.425572 C = 5918.883773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.209 3.791 3 H 0.037 0.963 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.090 3.910 14 C -0.129 4.129 15 H 0.101 0.899 16 C -0.175 4.175 17 C -0.149 4.149 18 H 0.099 0.901 19 C -0.037 4.037 20 C -0.144 4.144 21 C -0.137 4.137 22 C -0.139 4.139 23 H 0.031 0.969 24 H 0.008 0.992 25 H 0.072 0.928 26 H 0.259 0.741 27 H 0.323 0.677 28 H 0.063 0.937 29 H 0.019 0.981 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.321 -2.294 17.107 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.101 3.899 3 H 0.055 0.945 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.040 4.040 14 C -0.148 4.148 15 H 0.119 0.881 16 C -0.212 4.212 17 C -0.167 4.167 18 H 0.117 0.883 19 C -0.038 4.038 20 C -0.201 4.201 21 C -0.195 4.195 22 C -0.196 4.196 23 H 0.050 0.950 24 H 0.027 0.973 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.139 0.861 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.941 -2.071 16.788 17.027 hybrid contribution -0.790 -0.255 -0.746 1.116 sum 1.151 -2.326 16.043 16.251 Atomic orbital electron populations 1.22375 1.01091 0.99717 0.99031 1.19184 0.89177 0.94826 0.86681 0.94459 1.21130 1.34168 1.08273 0.89765 0.92020 1.24956 0.95609 0.94898 0.99017 1.69947 1.43983 1.16325 1.23547 0.86556 0.78911 0.79644 0.82536 1.20782 1.21455 1.19929 1.60787 1.57864 1.08982 1.03413 1.21471 0.97897 0.95252 0.89347 1.22393 1.00305 0.99397 0.92673 0.88084 1.23218 0.90886 1.03427 1.03638 1.22450 1.02533 0.99580 0.92185 0.88327 1.20028 0.95452 0.94740 0.93532 1.21998 0.98779 0.97949 1.01412 1.21835 1.01691 0.99093 0.96837 1.21842 0.95762 1.00644 1.01390 0.94988 0.97329 0.90937 0.93121 0.86101 0.91832 0.96266 0.88731 0.89201 0.92332 0.93091 0.92333 0.92774 0.92975 0.92686 0.92356 0.93134 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 8.96 37.16 0.33 -3.61 16 2 C 0.21 5.38 2.44 -68.87 -0.17 5.21 16 3 H 0.04 1.06 7.78 -51.93 -0.40 0.66 16 4 C -0.49 -13.98 8.77 -34.44 -0.30 -14.29 16 5 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 6 C 0.06 1.58 5.29 -17.82 -0.09 1.49 16 7 N -0.90 -26.31 11.98 55.43 0.66 -25.65 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.68 -14.84 6.23 -107.96 -0.67 -15.52 16 13 C 0.09 1.67 5.76 -3.83 -0.02 1.65 16 14 C -0.13 -1.93 4.80 -90.62 -0.44 -2.36 16 15 H 0.10 1.51 7.06 -51.93 -0.37 1.15 16 16 C -0.17 -2.34 9.21 -26.73 -0.25 -2.59 16 17 C -0.15 -1.87 4.87 -90.62 -0.44 -2.31 16 18 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 19 C -0.04 -0.40 0.88 -154.51 -0.14 -0.53 16 20 C -0.14 -1.45 7.07 37.16 0.26 -1.19 16 21 C -0.14 -1.28 8.46 37.16 0.31 -0.97 16 22 C -0.14 -1.48 8.31 37.16 0.31 -1.17 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.01 0.17 7.35 -51.93 -0.38 -0.21 16 25 H 0.07 1.93 6.84 -51.93 -0.36 1.57 16 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.32 6.63 8.47 -39.29 -0.33 6.29 16 28 H 0.06 1.24 7.79 -51.93 -0.40 0.83 16 29 H 0.02 0.36 7.36 -51.93 -0.38 -0.02 16 30 H 0.09 1.16 5.85 -51.93 -0.30 0.85 16 31 H 0.09 1.25 8.03 -51.93 -0.42 0.83 16 32 H 0.06 0.57 6.98 -51.93 -0.36 0.21 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.63 7.07 -51.93 -0.37 0.26 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.66 7.29 -51.93 -0.38 0.28 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 313.01 15.07 4.72 4.72 Total: -1.00 -28.64 313.01 -8.32 -36.96 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.38 Total: 3.35 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -0.63 Total: -20.68 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.01 Total: -41.16 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.64 -8.32 -36.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699760558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.560 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds