Wall clock time and date at job start Mon Mar 30 2020 02:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47081 * 2 1 4 4 C 1.50697 * 109.47133 * 240.00664 * 2 1 3 5 5 H 1.07999 * 120.00158 * 245.34714 * 4 2 1 6 6 C 1.37881 * 120.00462 * 65.34486 * 4 2 1 7 7 N 1.31519 * 119.99492 * 5.14741 * 6 4 2 8 8 Si 1.86797 * 120.00069 * 185.14791 * 6 4 2 9 9 H 1.48501 * 109.47243 * 85.00288 * 8 6 4 10 10 H 1.48507 * 109.46766 * 204.99906 * 8 6 4 11 11 H 1.48491 * 109.47366 * 324.99740 * 8 6 4 12 12 N 1.46896 * 109.47556 * 120.00317 * 2 1 3 13 13 C 1.46896 * 110.99854 * 275.00478 * 12 2 1 14 14 C 1.53000 * 109.47151 * 179.97438 * 13 12 2 15 15 H 1.08998 * 115.55017 * 330.72012 * 14 13 12 16 16 C 1.53002 * 117.50147 * 116.39009 * 14 13 12 17 17 C 1.52999 * 60.00283 * 107.49160 * 16 14 13 18 18 H 1.08996 * 117.49960 * 252.51489 * 17 16 14 19 19 C 1.52995 * 117.49755 * 107.48849 * 17 16 14 20 20 C 1.52996 * 109.47692 * 351.38096 * 19 17 16 21 21 C 1.53009 * 109.46920 * 111.38258 * 19 17 16 22 22 C 1.53002 * 109.46974 * 231.37579 * 19 17 16 23 23 H 1.08997 * 109.46775 * 174.97312 * 1 2 3 24 24 H 1.08998 * 109.47127 * 294.96848 * 1 2 3 25 25 H 1.09000 * 109.47159 * 54.97607 * 1 2 3 26 26 H 0.97003 * 119.99628 * 180.02562 * 7 6 4 27 27 H 1.00903 * 110.99547 * 38.95045 * 12 2 1 28 28 H 1.09005 * 109.47356 * 299.99392 * 13 12 2 29 29 H 1.08995 * 109.47718 * 59.99542 * 13 12 2 30 30 H 1.09005 * 117.49751 * 214.98474 * 16 14 13 31 31 H 1.09002 * 117.49526 * 359.97274 * 16 14 13 32 32 H 1.09001 * 109.47192 * 59.99601 * 20 19 17 33 33 H 1.08994 * 109.47566 * 180.02562 * 20 19 17 34 34 H 1.09002 * 109.46729 * 299.99702 * 20 19 17 35 35 H 1.08997 * 109.46773 * 59.99469 * 21 19 17 36 36 H 1.08994 * 109.46939 * 179.97438 * 21 19 17 37 37 H 1.09001 * 109.46729 * 299.99643 * 21 19 17 38 38 H 1.08995 * 109.47334 * 60.00798 * 22 19 17 39 39 H 1.09002 * 109.46904 * 180.02562 * 22 19 17 40 40 H 1.08995 * 109.47508 * 300.00455 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7102 -1.2305 5 1 2.5802 -1.6360 -1.1339 6 6 1.7926 -0.1784 -2.4798 7 7 1.2152 0.9978 -2.5939 8 14 2.2878 -1.1283 -4.0101 9 1 1.2111 -2.0864 -4.3680 10 1 2.5007 -0.1807 -5.1336 11 1 3.5451 -1.8727 -3.7455 12 7 2.0198 -0.6925 1.1993 13 6 2.0825 0.2225 2.3468 14 6 2.5952 -0.5333 3.5743 15 1 2.3637 -1.5981 3.6014 16 6 3.9297 -0.0851 4.1735 17 6 2.6216 0.2184 4.9068 18 1 2.2737 1.2514 4.9088 19 6 2.3208 -0.5820 6.1755 20 6 3.3480 -1.7060 6.3251 21 6 2.3962 0.3430 7.3919 22 6 0.9173 -1.1833 6.0783 23 1 -0.3633 -1.0237 -0.0900 24 1 -0.3633 0.4338 0.9316 25 1 -0.3633 0.5898 -0.8416 26 1 1.0462 1.3718 -3.4728 27 1 1.4496 -1.4980 1.4099 28 1 2.7589 1.0462 2.1182 29 1 1.0872 0.6162 2.5525 30 1 4.5761 -0.8550 4.5950 31 1 4.4427 0.7480 3.6929 32 1 4.3479 -1.2775 6.3942 33 1 3.1335 -2.2764 7.2287 34 1 3.2942 -2.3650 5.4585 35 1 1.6644 1.1438 7.2853 36 1 2.1815 -0.2271 8.2957 37 1 3.3961 0.7715 7.4611 38 1 0.8635 -1.8423 5.2119 39 1 0.7029 -1.7532 6.9824 40 1 0.1855 -0.3826 5.9718 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699760558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:50 Heat of formation + Delta-G solvation = -16.463946 kcal Electronic energy + Delta-G solvation = -15801.787674 eV Core-core repulsion = 13422.649110 eV Total energy + Delta-G solvation = -2379.138564 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.22153 -37.71650 -35.30862 -33.97273 -30.58544 -28.22390 -28.07500 -27.24203 -25.97511 -23.70182 -22.17640 -21.55317 -19.18949 -18.37900 -16.82212 -16.74637 -15.99449 -15.64060 -15.02203 -14.90163 -14.72610 -14.32401 -13.86151 -13.65676 -13.22683 -13.13559 -12.89070 -12.80667 -12.73430 -12.50358 -12.49077 -12.24140 -12.15993 -12.02195 -11.80728 -11.64619 -11.39490 -11.07102 -10.74205 -10.52862 -10.46981 -8.94707 -8.11476 -6.20560 1.43277 1.43862 1.54512 2.44406 2.89467 3.18510 3.49936 3.89234 3.94734 4.01620 4.18414 4.34291 4.38064 4.52677 4.67560 4.69625 4.75033 4.78687 4.84614 4.87233 4.90885 4.96004 4.97702 5.05644 5.10547 5.14773 5.22825 5.28133 5.36232 5.43864 5.45089 5.54031 5.60301 5.64184 5.75568 6.22927 6.66497 6.85719 6.94368 7.48614 8.96550 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.052554 B = 0.004847 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.660908 B = 5775.425572 C = 5918.883773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.213 3.787 3 H 0.001 0.999 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.926 5.926 8 Si 0.961 3.039 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.685 5.685 13 C 0.096 3.904 14 C -0.142 4.142 15 H 0.104 0.896 16 C -0.172 4.172 17 C -0.130 4.130 18 H 0.096 0.904 19 C -0.037 4.037 20 C -0.143 4.143 21 C -0.135 4.135 22 C -0.139 4.139 23 H 0.038 0.962 24 H 0.029 0.971 25 H 0.045 0.955 26 H 0.261 0.739 27 H 0.332 0.668 28 H 0.046 0.954 29 H 0.017 0.983 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 -3.306 18.328 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.566 5.566 8 Si 0.787 3.213 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.195 1.195 12 N -0.314 5.314 13 C -0.034 4.034 14 C -0.161 4.161 15 H 0.122 0.878 16 C -0.209 4.209 17 C -0.148 4.148 18 H 0.114 0.886 19 C -0.037 4.037 20 C -0.200 4.200 21 C -0.193 4.193 22 C -0.196 4.196 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.149 0.851 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.128 0.872 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.192 -3.089 18.030 18.424 hybrid contribution -0.861 0.092 -1.078 1.383 sum 1.331 -2.997 16.953 17.267 Atomic orbital electron populations 1.22172 1.00008 0.99704 0.98930 1.18956 0.89916 0.92877 0.87825 0.98102 1.21431 1.34532 1.08288 0.91187 0.92686 1.25752 0.95522 0.95691 1.02030 1.70070 1.44698 1.17586 1.24287 0.85522 0.78775 0.78374 0.78659 1.19839 1.21024 1.19489 1.60652 1.57731 1.09575 1.03482 1.21421 0.97585 0.94726 0.89642 1.22183 1.02150 0.99302 0.92450 0.87842 1.23281 0.90841 1.03470 1.03320 1.22523 1.01146 0.99338 0.91816 0.88604 1.20075 0.95728 0.95009 0.92911 1.21987 0.98715 0.97633 1.01709 1.21817 1.01898 0.98943 0.96595 1.21842 0.95589 1.00496 1.01710 0.94327 0.95246 0.93589 0.93013 0.85140 0.93509 0.96483 0.87212 0.89953 0.91969 0.91669 0.93254 0.92820 0.91591 0.92443 0.93436 0.91564 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.25 8.96 71.98 0.64 -6.60 16 2 C 0.21 11.16 2.44 44.17 0.11 11.27 16 3 H 0.00 0.06 7.78 -2.39 -0.02 0.04 16 4 C -0.52 -29.48 8.77 25.60 0.22 -29.25 16 5 H 0.05 3.15 7.82 -2.91 -0.02 3.12 16 6 C 0.01 0.46 5.29 84.65 0.45 0.91 16 7 N -0.93 -54.98 11.98 21.45 0.26 -54.72 16 8 Si 0.96 44.77 29.54 68.60 2.03 46.79 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 N -0.68 -30.05 6.23 -495.46 -3.09 -33.13 16 13 C 0.10 3.57 5.76 86.30 0.50 4.07 16 14 C -0.14 -4.15 4.80 -10.79 -0.05 -4.20 16 15 H 0.10 3.00 7.06 -2.39 -0.02 2.98 16 16 C -0.17 -4.42 9.21 30.59 0.28 -4.14 16 17 C -0.13 -3.07 4.87 -10.79 -0.05 -3.13 16 18 H 0.10 2.35 8.11 -2.39 -0.02 2.33 16 19 C -0.04 -0.71 0.88 -52.18 -0.05 -0.75 16 20 C -0.14 -2.52 7.07 71.98 0.51 -2.01 16 21 C -0.14 -2.17 8.46 71.99 0.61 -1.56 16 22 C -0.14 -2.67 8.31 71.98 0.60 -2.07 16 23 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.03 1.26 7.35 -2.39 -0.02 1.24 16 25 H 0.05 2.47 6.84 -2.39 -0.02 2.45 16 26 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 27 H 0.33 13.51 8.47 -89.69 -0.76 12.75 16 28 H 0.05 1.87 7.79 -2.38 -0.02 1.86 16 29 H 0.02 0.64 7.36 -2.39 -0.02 0.62 16 30 H 0.11 2.48 5.85 -2.38 -0.01 2.47 16 31 H 0.08 2.24 8.03 -2.39 -0.02 2.22 16 32 H 0.06 1.05 6.98 -2.39 -0.02 1.03 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 0.96 7.07 -2.39 -0.02 0.94 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.05 1.01 7.29 -2.39 -0.02 0.99 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -60.86 313.01 3.19 -57.67 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.22 Total: 20.87 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 3.77 Total: -37.48 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -2.83 Total: -87.86 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -60.86 3.19 -57.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699760558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.204 kcal (2) G-P(sol) polarization free energy of solvation -60.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds