Wall clock time and date at job start Mon Mar 30 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 C 1.53003 * 109.47339 * 179.97438 * 13 12 2 15 15 H 1.08992 * 115.55021 * 29.28000 * 14 13 12 16 16 C 1.53005 * 117.49664 * 243.60986 * 14 13 12 17 17 C 1.52999 * 59.99877 * 252.51245 * 16 14 13 18 18 H 1.09003 * 117.50028 * 107.49130 * 17 16 14 19 19 C 1.53000 * 117.49944 * 252.51665 * 17 16 14 20 20 C 1.52994 * 109.47775 * 128.62371 * 19 17 16 21 21 C 1.53012 * 109.46940 * 248.62078 * 19 17 16 22 22 C 1.53003 * 109.47107 * 8.61418 * 19 17 16 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99706 * 38.96022 * 12 2 1 28 28 H 1.09004 * 109.46925 * 300.00216 * 13 12 2 29 29 H 1.09001 * 109.46797 * 59.99650 * 13 12 2 30 30 H 1.09003 * 117.49971 * 359.97438 * 16 14 13 31 31 H 1.09001 * 117.49516 * 145.02281 * 16 14 13 32 32 H 1.08996 * 109.47490 * 59.99348 * 20 19 17 33 33 H 1.08997 * 109.47711 * 180.02562 * 20 19 17 34 34 H 1.09011 * 109.46736 * 299.99874 * 20 19 17 35 35 H 1.08998 * 109.46919 * 59.99685 * 21 19 17 36 36 H 1.08992 * 109.46963 * 179.97438 * 21 19 17 37 37 H 1.08996 * 109.46736 * 299.99679 * 21 19 17 38 38 H 1.09005 * 109.46232 * 60.00698 * 22 19 17 39 39 H 1.08996 * 109.46997 * 179.97438 * 22 19 17 40 40 H 1.08998 * 109.47512 * 300.00780 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5746 15 1 3.2670 -1.3658 3.3672 16 6 1.6455 -0.6713 4.7664 17 6 2.8441 0.2759 4.8490 18 1 2.6429 1.3466 4.8129 19 6 4.0180 -0.1457 5.7351 20 6 5.3195 -0.0524 4.9363 21 6 4.0981 0.7807 6.9503 22 6 3.8102 -1.5867 6.2054 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 1.4495 -1.4979 1.4101 28 1 2.7588 1.0463 2.1182 29 1 1.0870 0.6164 2.5525 30 1 0.6558 -0.2235 4.6760 31 1 1.6932 -1.5949 5.3433 32 1 5.4675 0.9742 4.6013 33 1 6.1556 -0.3532 5.5674 34 1 5.2624 -0.7124 4.0705 35 1 3.1709 0.7143 7.5195 36 1 4.9340 0.4801 7.5818 37 1 4.2461 1.8073 6.6154 38 1 3.7531 -2.2466 5.3396 39 1 4.6467 -1.8872 6.8363 40 1 2.8830 -1.6531 6.7745 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699760560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:51 Heat of formation + Delta-G solvation = 0.571204 kcal Electronic energy + Delta-G solvation = -15804.425735 eV Core-core repulsion = 13426.025870 eV Total energy + Delta-G solvation = -2378.399864 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.17779 -35.98824 -33.99875 -32.08613 -28.68741 -27.37276 -27.25335 -25.15922 -24.34757 -22.74831 -20.21365 -20.13412 -18.24557 -16.38643 -15.79401 -14.84388 -14.43425 -14.11358 -14.04374 -13.55387 -13.22922 -12.90600 -12.44912 -12.34746 -11.98511 -11.75102 -11.65162 -11.58416 -11.16670 -11.00336 -10.93521 -10.80649 -10.69169 -10.50721 -10.42192 -10.11044 -9.94917 -9.55053 -9.39682 -8.93012 -8.32473 -7.15714 -5.94395 -3.97471 3.35262 3.41371 3.46377 3.99003 4.46776 4.61741 4.83581 4.95585 5.15585 5.21910 5.31838 5.37053 5.53595 5.59331 5.66536 5.71405 5.78903 5.88729 5.89715 5.91158 6.01197 6.06898 6.15395 6.22905 6.31799 6.37254 6.41135 6.48829 6.70704 6.74037 6.88878 7.14980 7.43719 7.78247 7.93822 8.33241 8.61699 8.68741 9.10031 9.67808 11.12726 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045725 B = 0.004972 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.212619 B = 5630.663618 C = 5869.921614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.682 5.682 13 C 0.090 3.910 14 C -0.131 4.131 15 H 0.109 0.891 16 C -0.187 4.187 17 C -0.142 4.142 18 H 0.099 0.901 19 C -0.037 4.037 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.144 4.144 23 H 0.027 0.973 24 H 0.088 0.912 25 H 0.004 0.996 26 H 0.259 0.741 27 H 0.325 0.675 28 H 0.065 0.935 29 H 0.017 0.983 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.900 -1.502 16.442 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.312 5.312 13 C -0.040 4.040 14 C -0.150 4.150 15 H 0.127 0.873 16 C -0.224 4.224 17 C -0.161 4.161 18 H 0.117 0.883 19 C -0.037 4.037 20 C -0.197 4.197 21 C -0.195 4.195 22 C -0.201 4.201 23 H 0.046 0.954 24 H 0.107 0.893 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.141 0.859 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.501 -1.294 16.121 16.788 hybrid contribution -0.814 -0.227 -0.675 1.081 sum 3.688 -1.521 15.446 15.953 Atomic orbital electron populations 1.22425 1.00804 0.99134 1.00378 1.19169 0.89538 0.94404 0.86643 0.95008 1.21175 1.30048 1.12342 0.89635 0.91968 1.24957 0.95399 0.95214 0.99036 1.69885 1.37468 1.23268 1.23262 0.86511 0.79238 0.79230 0.82490 1.20870 1.21402 1.19876 1.60784 1.57935 1.09106 1.03355 1.21459 0.97664 0.95284 0.89548 1.22504 1.01855 1.01778 0.88837 0.87301 1.23297 0.94576 1.01397 1.03100 1.22391 0.96649 0.97250 0.99817 0.88313 1.20030 0.94201 0.95137 0.94366 1.21846 0.95679 1.02232 0.99945 1.21839 1.01290 0.99187 0.97155 1.22000 1.01175 0.95870 1.01078 0.95382 0.89325 0.97729 0.93128 0.85898 0.91676 0.96488 0.89515 0.88669 0.92642 0.93199 0.92033 0.92800 0.92949 0.92730 0.92307 0.93050 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.94 37.16 0.33 -3.82 16 2 C 0.21 5.42 2.57 -68.87 -0.18 5.24 16 3 H 0.03 0.90 7.80 -51.93 -0.40 0.50 16 4 C -0.49 -13.93 8.84 -34.44 -0.30 -14.23 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -26.14 11.32 55.43 0.63 -25.51 16 8 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.68 -14.89 6.23 -107.95 -0.67 -15.56 16 13 C 0.09 1.67 5.77 -3.83 -0.02 1.65 16 14 C -0.13 -1.96 4.80 -90.62 -0.43 -2.39 16 15 H 0.11 1.70 7.07 -51.93 -0.37 1.33 16 16 C -0.19 -2.40 9.21 -26.73 -0.25 -2.64 16 17 C -0.14 -1.80 4.87 -90.62 -0.44 -2.24 16 18 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 19 C -0.04 -0.40 0.88 -154.50 -0.14 -0.54 16 20 C -0.14 -1.57 8.31 37.15 0.31 -1.26 16 21 C -0.14 -1.31 8.46 37.16 0.31 -0.99 16 22 C -0.14 -1.46 7.07 37.16 0.26 -1.19 16 23 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 24 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 25 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.32 6.77 8.47 -39.29 -0.33 6.44 16 28 H 0.06 1.26 8.06 -51.93 -0.42 0.85 16 29 H 0.02 0.32 7.17 -51.93 -0.37 -0.05 16 30 H 0.09 1.13 8.03 -51.93 -0.42 0.72 16 31 H 0.10 1.10 5.85 -51.93 -0.30 0.80 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.76 7.29 -51.92 -0.38 0.39 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.64 7.07 -51.93 -0.37 0.27 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.55 6.98 -51.93 -0.36 0.19 16 LS Contribution 311.95 15.07 4.70 4.70 Total: -1.00 -28.34 311.95 -8.35 -36.70 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.35 Total: 3.90 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -0.64 Total: -20.98 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -0.05 Total: -41.08 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.34 -8.35 -36.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699760560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.267 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds