Wall clock time and date at job start Mon Mar 30 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 C 1.53003 * 109.47339 * 179.97438 * 13 12 2 15 15 H 1.08992 * 115.55021 * 29.28000 * 14 13 12 16 16 C 1.53005 * 117.49664 * 243.60986 * 14 13 12 17 17 C 1.52999 * 59.99877 * 252.51245 * 16 14 13 18 18 H 1.09003 * 117.50028 * 107.49130 * 17 16 14 19 19 C 1.53000 * 117.49944 * 252.51665 * 17 16 14 20 20 C 1.52994 * 109.47775 * 128.62371 * 19 17 16 21 21 C 1.53012 * 109.46940 * 248.62078 * 19 17 16 22 22 C 1.53003 * 109.47107 * 8.61418 * 19 17 16 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99706 * 38.96022 * 12 2 1 28 28 H 1.09004 * 109.46925 * 300.00216 * 13 12 2 29 29 H 1.09001 * 109.46797 * 59.99650 * 13 12 2 30 30 H 1.09003 * 117.49971 * 359.97438 * 16 14 13 31 31 H 1.09001 * 117.49516 * 145.02281 * 16 14 13 32 32 H 1.08996 * 109.47490 * 59.99348 * 20 19 17 33 33 H 1.08997 * 109.47711 * 180.02562 * 20 19 17 34 34 H 1.09011 * 109.46736 * 299.99874 * 20 19 17 35 35 H 1.08998 * 109.46919 * 59.99685 * 21 19 17 36 36 H 1.08992 * 109.46963 * 179.97438 * 21 19 17 37 37 H 1.08996 * 109.46736 * 299.99679 * 21 19 17 38 38 H 1.09005 * 109.46232 * 60.00698 * 22 19 17 39 39 H 1.08996 * 109.46997 * 179.97438 * 22 19 17 40 40 H 1.08998 * 109.47512 * 300.00780 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5746 15 1 3.2670 -1.3658 3.3672 16 6 1.6455 -0.6713 4.7664 17 6 2.8441 0.2759 4.8490 18 1 2.6429 1.3466 4.8129 19 6 4.0180 -0.1457 5.7351 20 6 5.3195 -0.0524 4.9363 21 6 4.0981 0.7807 6.9503 22 6 3.8102 -1.5867 6.2054 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 1.4495 -1.4979 1.4101 28 1 2.7588 1.0463 2.1182 29 1 1.0870 0.6164 2.5525 30 1 0.6558 -0.2235 4.6760 31 1 1.6932 -1.5949 5.3433 32 1 5.4675 0.9742 4.6013 33 1 6.1556 -0.3532 5.5674 34 1 5.2624 -0.7124 4.0705 35 1 3.1709 0.7143 7.5195 36 1 4.9340 0.4801 7.5818 37 1 4.2461 1.8073 6.6154 38 1 3.7531 -2.2466 5.3396 39 1 4.6467 -1.8872 6.8363 40 1 2.8830 -1.6531 6.7745 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699760560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:51 Heat of formation + Delta-G solvation = -15.181988 kcal Electronic energy + Delta-G solvation = -15805.108844 eV Core-core repulsion = 13426.025870 eV Total energy + Delta-G solvation = -2379.082974 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.22991 -37.72359 -35.33741 -33.95835 -30.51526 -28.22107 -28.07176 -27.26820 -25.97109 -23.72782 -22.14843 -21.49538 -19.18787 -18.39326 -17.01613 -16.77277 -15.79086 -15.56239 -15.06855 -14.93812 -14.72526 -14.35432 -13.74994 -13.58321 -13.36323 -13.13634 -12.94115 -12.81967 -12.69804 -12.48839 -12.46824 -12.18994 -12.14818 -12.04846 -11.81346 -11.60847 -11.40368 -11.06510 -10.73352 -10.50917 -10.48139 -8.96542 -8.09801 -6.21442 1.43324 1.43866 1.55389 2.44272 2.89494 3.18263 3.46680 3.84183 3.95922 4.08336 4.17250 4.32298 4.36330 4.52047 4.66086 4.69443 4.77927 4.83292 4.86180 4.88838 4.90741 4.95552 4.97660 5.10298 5.10810 5.14563 5.22759 5.27856 5.33834 5.44381 5.46424 5.54354 5.61367 5.68317 5.81818 6.26885 6.65689 6.83984 6.94664 7.48811 8.95965 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045725 B = 0.004972 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.212619 B = 5630.663618 C = 5869.921614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H -0.002 1.002 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.685 5.685 13 C 0.096 3.904 14 C -0.146 4.146 15 H 0.103 0.897 16 C -0.172 4.172 17 C -0.130 4.130 18 H 0.096 0.904 19 C -0.037 4.037 20 C -0.140 4.140 21 C -0.135 4.135 22 C -0.143 4.143 23 H 0.033 0.967 24 H 0.062 0.938 25 H 0.022 0.978 26 H 0.261 0.739 27 H 0.332 0.668 28 H 0.047 0.953 29 H 0.016 0.984 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.205 -2.365 17.717 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.105 3.895 3 H 0.016 0.984 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.315 5.315 13 C -0.033 4.033 14 C -0.165 4.165 15 H 0.121 0.879 16 C -0.209 4.209 17 C -0.149 4.149 18 H 0.114 0.886 19 C -0.037 4.037 20 C -0.197 4.197 21 C -0.192 4.192 22 C -0.200 4.200 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.149 0.851 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.105 0.895 31 H 0.131 0.869 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.807 -2.162 17.416 18.196 hybrid contribution -0.898 0.078 -1.033 1.371 sum 3.908 -2.083 16.383 16.971 Atomic orbital electron populations 1.22225 0.99968 0.99262 0.99942 1.18948 0.90088 0.92607 0.87834 0.98419 1.21456 1.30459 1.12465 0.91059 0.92714 1.25751 0.95442 0.95871 1.01982 1.70013 1.38099 1.24319 1.24014 0.85481 0.78803 0.78206 0.78663 1.19966 1.20909 1.19513 1.60651 1.57728 1.09642 1.03445 1.21408 0.97314 0.94756 0.89859 1.22220 1.03608 1.02335 0.88326 0.87925 1.23357 0.94331 1.02097 1.01073 1.22486 0.97390 0.97009 0.97993 0.88624 1.20071 0.92941 0.96195 0.94516 1.21844 0.96680 1.01452 0.99715 1.21813 1.02174 0.98668 0.96547 1.21986 1.02185 0.94859 1.00951 0.94817 0.91940 0.95868 0.92982 0.85108 0.93417 0.96631 0.89520 0.86941 0.93274 0.91595 0.93726 0.92240 0.91646 0.92904 0.93301 0.91759 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.68 8.94 71.98 0.64 -7.04 16 2 C 0.21 11.26 2.57 44.17 0.11 11.38 16 3 H 0.00 -0.13 7.80 -2.39 -0.02 -0.14 16 4 C -0.52 -29.51 8.84 25.60 0.23 -29.28 16 5 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 6 C 0.01 0.42 5.30 84.66 0.45 0.87 16 7 N -0.92 -54.38 11.32 21.45 0.24 -54.14 16 8 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 12 N -0.68 -30.23 6.23 -495.46 -3.09 -33.32 16 13 C 0.10 3.59 5.77 86.31 0.50 4.09 16 14 C -0.15 -4.28 4.80 -10.79 -0.05 -4.33 16 15 H 0.10 3.17 7.07 -2.39 -0.02 3.15 16 16 C -0.17 -4.08 9.21 30.60 0.28 -3.80 16 17 C -0.13 -3.10 4.87 -10.79 -0.05 -3.15 16 18 H 0.10 2.36 8.11 -2.39 -0.02 2.34 16 19 C -0.04 -0.73 0.88 -52.18 -0.05 -0.78 16 20 C -0.14 -2.97 8.31 71.98 0.60 -2.37 16 21 C -0.13 -2.21 8.46 71.99 0.61 -1.60 16 22 C -0.14 -2.53 7.07 71.98 0.51 -2.02 16 23 H 0.03 1.58 8.13 -2.39 -0.02 1.56 16 24 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 25 H 0.02 1.02 7.45 -2.38 -0.02 1.00 16 26 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.33 13.78 8.47 -89.69 -0.76 13.02 16 28 H 0.05 1.91 8.06 -2.39 -0.02 1.90 16 29 H 0.02 0.58 7.17 -2.39 -0.02 0.57 16 30 H 0.09 2.09 8.03 -2.39 -0.02 2.07 16 31 H 0.11 2.30 5.85 -2.39 -0.01 2.29 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.04 1.09 7.29 -2.38 -0.02 1.07 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.05 0.96 7.07 -2.38 -0.02 0.95 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.05 6.98 -2.39 -0.02 1.03 16 Total: -1.00 -60.32 311.95 3.18 -57.13 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.22 Total: 21.62 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 3.78 Total: -38.03 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -2.84 Total: -87.45 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -60.32 3.18 -57.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699760560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.951 kcal (2) G-P(sol) polarization free energy of solvation -60.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds