Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.50710 * 109.46737 * 174.99856 * 4 2 1 6 6 H 1.07992 * 119.99708 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99918 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46941 * 59.99911 * 9 7 5 11 11 H 1.48494 * 109.47350 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46755 * 300.00286 * 9 7 5 13 13 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 14 14 C 1.46897 * 111.00133 * 275.00091 * 13 2 1 15 15 C 1.52997 * 109.47029 * 180.02562 * 14 13 2 16 16 C 1.53775 * 113.61495 * 274.13021 * 15 14 13 17 17 C 1.53958 * 87.02222 * 220.04916 * 16 15 14 18 18 C 1.53000 * 113.53746 * 270.81131 * 17 16 15 19 19 C 1.52999 * 113.74157 * 139.94291 * 17 16 15 20 20 C 1.53781 * 87.10818 * 25.36661 * 17 16 15 21 21 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 25 25 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 26 26 H 0.96999 * 119.99643 * 179.97438 * 8 7 5 27 27 H 1.00901 * 110.99931 * 151.04418 * 13 2 1 28 28 H 1.09003 * 109.46826 * 299.99875 * 14 13 2 29 29 H 1.08993 * 109.47326 * 59.99934 * 14 13 2 30 30 H 1.09005 * 112.85281 * 45.33326 * 15 14 13 31 31 H 1.08997 * 113.61527 * 334.57112 * 16 15 14 32 32 H 1.09009 * 113.61289 * 105.47395 * 16 15 14 33 33 H 1.09002 * 109.46651 * 157.49349 * 18 17 16 34 34 H 1.08998 * 109.47505 * 277.49253 * 18 17 16 35 35 H 1.08996 * 109.46935 * 37.49795 * 18 17 16 36 36 H 1.09000 * 109.47031 * 322.40808 * 19 17 16 37 37 H 1.09010 * 109.46803 * 82.40302 * 19 17 16 38 38 H 1.08997 * 109.47524 * 202.40243 * 19 17 16 39 39 H 1.09004 * 113.61142 * 220.08748 * 20 17 16 40 40 H 1.08990 * 113.61671 * 89.18712 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0862 -0.5393 7 6 4.2304 -1.1936 -2.3579 8 7 3.5763 -1.8379 -3.2996 9 14 6.0921 -1.0624 -2.4363 10 1 6.6838 -1.6883 -1.2266 11 1 6.5871 -1.7623 -3.6488 12 1 6.4854 0.3684 -2.4960 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2225 2.3469 15 6 2.5963 -0.5330 3.5741 16 6 1.4909 -1.2618 4.3561 17 6 2.2103 -0.8074 5.6392 18 6 3.2752 -1.7930 6.1244 19 6 1.2606 -0.3627 6.7533 20 6 2.7801 0.3583 4.8138 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7517 -1.7715 -1.2056 25 1 1.6053 -0.2617 -2.1370 26 1 4.0607 -2.2447 -4.0350 27 1 2.9174 -1.1205 1.0287 28 1 2.7589 1.0461 2.1182 29 1 1.0872 0.6162 2.5525 30 1 3.4612 -1.1590 3.3544 31 1 0.5027 -0.8198 4.2298 32 1 1.4940 -2.3423 4.2121 33 1 3.9946 -1.2696 6.7542 34 1 2.7998 -2.5878 6.6992 35 1 3.7899 -2.2236 5.2655 36 1 0.4158 0.1717 6.3188 37 1 0.8983 -1.2380 7.2928 38 1 1.7911 0.2947 7.4421 39 1 3.8225 0.5840 5.0387 40 1 2.1450 1.2441 4.8128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702026269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = -13.299382 kcal Electronic energy + Delta-G solvation = -15857.451439 eV Core-core repulsion = 13478.450101 eV Total energy + Delta-G solvation = -2379.001338 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67356 -36.37146 -32.90913 -31.64534 -29.26426 -27.47454 -27.35038 -25.56726 -24.71059 -22.81940 -20.33809 -19.28156 -18.12375 -16.32557 -15.32848 -15.12045 -14.51254 -14.39623 -14.32057 -13.73194 -13.21518 -12.97067 -12.70123 -12.33872 -11.83058 -11.78336 -11.77704 -11.56642 -11.27888 -11.18813 -11.08949 -10.74570 -10.67458 -10.45332 -10.33085 -10.10796 -9.87856 -9.77626 -9.13309 -9.03920 -8.37363 -7.53761 -6.00719 -4.03731 3.31797 3.36791 3.38664 4.44562 4.51224 4.67051 4.77987 4.86191 5.23825 5.29208 5.39276 5.53875 5.56632 5.65748 5.75746 5.84063 5.86038 5.91748 5.96315 6.00053 6.01281 6.09278 6.12915 6.27287 6.31129 6.31722 6.36687 6.58464 6.59314 6.75774 6.97727 7.00166 7.58338 7.66779 7.99456 8.13628 8.34950 8.41854 9.02285 9.60174 11.10199 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029805 B = 0.005907 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.224929 B = 4739.161078 C = 5378.188925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.027 0.973 4 C 0.021 3.979 5 C -0.523 4.523 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.682 5.682 14 C 0.070 3.930 15 C -0.103 4.103 16 C -0.113 4.113 17 C -0.095 4.095 18 C -0.127 4.127 19 C -0.134 4.134 20 C -0.128 4.128 21 H 0.035 0.965 22 H 0.046 0.954 23 H 0.054 0.946 24 H 0.025 0.975 25 H 0.020 0.980 26 H 0.261 0.739 27 H 0.353 0.647 28 H 0.020 0.980 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 2.643 16.616 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.315 5.315 14 C -0.060 4.060 15 C -0.122 4.122 16 C -0.151 4.151 17 C -0.095 4.095 18 C -0.184 4.184 19 C -0.191 4.191 20 C -0.166 4.166 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.044 0.956 25 H 0.038 0.962 26 H 0.071 0.929 27 H 0.173 0.827 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.648 2.289 16.601 17.150 hybrid contribution 1.854 0.638 -0.414 2.004 sum -1.794 2.927 16.187 16.547 Atomic orbital electron populations 1.21784 0.96870 1.01229 0.99313 1.21601 0.93275 0.95784 0.91618 0.95537 1.19275 0.95351 0.96185 0.90864 1.21141 0.92267 1.34466 1.08283 0.93122 1.24985 0.98190 0.95202 0.95710 1.69955 1.35564 1.35586 1.11942 0.86700 0.85964 0.78135 0.77439 1.20228 1.21265 1.20392 1.60546 1.34582 1.32139 1.04263 1.21911 0.99114 0.93902 0.91051 1.22466 0.98919 0.97614 0.93203 1.23025 0.97728 1.00464 0.93857 1.21856 0.96514 0.96697 0.94443 1.21580 0.97678 0.98139 1.01041 1.21717 0.98691 1.00724 0.97948 1.23073 1.00641 0.96790 0.96087 0.94616 0.93467 0.92699 0.95615 0.96167 0.92917 0.82678 0.96165 0.92071 0.89412 0.90385 0.91631 0.92803 0.92679 0.92184 0.92673 0.92924 0.92992 0.91923 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.42 37.16 0.35 -2.14 16 2 C 0.09 1.85 2.59 -67.71 -0.18 1.67 16 3 H 0.03 0.59 7.80 -51.93 -0.40 0.18 16 4 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 5 C -0.52 -14.54 8.12 -34.44 -0.28 -14.82 16 6 H 0.05 1.37 7.49 -52.49 -0.39 0.98 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.68 -13.37 6.31 -106.73 -0.67 -14.05 16 14 C 0.07 1.14 5.31 -3.83 -0.02 1.12 16 15 C -0.10 -1.44 3.54 -89.81 -0.32 -1.75 16 16 C -0.11 -1.44 6.76 -25.83 -0.17 -1.62 16 17 C -0.10 -1.04 1.39 -153.60 -0.21 -1.25 16 18 C -0.13 -1.30 9.07 37.16 0.34 -0.96 16 19 C -0.13 -1.27 9.20 37.16 0.34 -0.93 16 20 C -0.13 -1.50 6.79 -25.92 -0.18 -1.68 16 21 H 0.03 0.59 7.45 -51.93 -0.39 0.20 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.35 7.52 7.21 -39.29 -0.28 7.24 16 28 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 29 H 0.06 0.97 7.17 -51.93 -0.37 0.59 16 30 H 0.09 1.29 7.66 -51.93 -0.40 0.90 16 31 H 0.08 1.00 7.75 -51.93 -0.40 0.60 16 32 H 0.06 0.87 8.10 -51.92 -0.42 0.44 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.65 7.34 -51.93 -0.38 0.27 16 36 H 0.05 0.52 7.96 -51.93 -0.41 0.11 16 37 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 40 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 LS Contribution 316.25 15.07 4.77 4.77 Total: -1.00 -28.61 316.25 -8.38 -36.99 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.63 Total: 2.03 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -0.55 Total: -20.31 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.06 Total: -40.02 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.61 -8.38 -36.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702026269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.689 kcal (2) G-P(sol) polarization free energy of solvation -28.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds