Wall clock time and date at job start Mon Mar 30 2020 02:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 5 5 C 1.50710 * 109.46737 * 174.99856 * 4 2 1 6 6 H 1.07992 * 119.99708 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99918 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46941 * 59.99911 * 9 7 5 11 11 H 1.48494 * 109.47350 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46755 * 300.00286 * 9 7 5 13 13 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 14 14 C 1.46897 * 111.00133 * 275.00091 * 13 2 1 15 15 C 1.52997 * 109.47029 * 180.02562 * 14 13 2 16 16 C 1.53775 * 113.61495 * 274.13021 * 15 14 13 17 17 C 1.53958 * 87.02222 * 220.04916 * 16 15 14 18 18 C 1.53000 * 113.53746 * 270.81131 * 17 16 15 19 19 C 1.52999 * 113.74157 * 139.94291 * 17 16 15 20 20 C 1.53781 * 87.10818 * 25.36661 * 17 16 15 21 21 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 25 25 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 26 26 H 0.96999 * 119.99643 * 179.97438 * 8 7 5 27 27 H 1.00901 * 110.99931 * 151.04418 * 13 2 1 28 28 H 1.09003 * 109.46826 * 299.99875 * 14 13 2 29 29 H 1.08993 * 109.47326 * 59.99934 * 14 13 2 30 30 H 1.09005 * 112.85281 * 45.33326 * 15 14 13 31 31 H 1.08997 * 113.61527 * 334.57112 * 16 15 14 32 32 H 1.09009 * 113.61289 * 105.47395 * 16 15 14 33 33 H 1.09002 * 109.46651 * 157.49349 * 18 17 16 34 34 H 1.08998 * 109.47505 * 277.49253 * 18 17 16 35 35 H 1.08996 * 109.46935 * 37.49795 * 18 17 16 36 36 H 1.09000 * 109.47031 * 322.40808 * 19 17 16 37 37 H 1.09010 * 109.46803 * 82.40302 * 19 17 16 38 38 H 1.08997 * 109.47524 * 202.40243 * 19 17 16 39 39 H 1.09004 * 113.61142 * 220.08748 * 20 17 16 40 40 H 1.08990 * 113.61671 * 89.18712 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0862 -0.5393 7 6 4.2304 -1.1936 -2.3579 8 7 3.5763 -1.8379 -3.2996 9 14 6.0921 -1.0624 -2.4363 10 1 6.6838 -1.6883 -1.2266 11 1 6.5871 -1.7623 -3.6488 12 1 6.4854 0.3684 -2.4960 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2225 2.3469 15 6 2.5963 -0.5330 3.5741 16 6 1.4909 -1.2618 4.3561 17 6 2.2103 -0.8074 5.6392 18 6 3.2752 -1.7930 6.1244 19 6 1.2606 -0.3627 6.7533 20 6 2.7801 0.3583 4.8138 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7517 -1.7715 -1.2056 25 1 1.6053 -0.2617 -2.1370 26 1 4.0607 -2.2447 -4.0350 27 1 2.9174 -1.1205 1.0287 28 1 2.7589 1.0461 2.1182 29 1 1.0872 0.6162 2.5525 30 1 3.4612 -1.1590 3.3544 31 1 0.5027 -0.8198 4.2298 32 1 1.4940 -2.3423 4.2121 33 1 3.9946 -1.2696 6.7542 34 1 2.7998 -2.5878 6.6992 35 1 3.7899 -2.2236 5.2655 36 1 0.4158 0.1717 6.3188 37 1 0.8983 -1.2380 7.2928 38 1 1.7911 0.2947 7.4421 39 1 3.8225 0.5840 5.0387 40 1 2.1450 1.2441 4.8128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702026269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:57 Heat of formation + Delta-G solvation = -29.320601 kcal Electronic energy + Delta-G solvation = -15858.146171 eV Core-core repulsion = 13478.450101 eV Total energy + Delta-G solvation = -2379.696070 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.67893 -38.02881 -34.88502 -33.08929 -30.58024 -29.28935 -28.23990 -26.55277 -26.10853 -24.77575 -21.54504 -20.96840 -19.05741 -18.51791 -16.79466 -16.59805 -16.11249 -15.82193 -15.39376 -14.79851 -14.68970 -14.22591 -13.77042 -13.55034 -13.49411 -13.41676 -13.17864 -12.76390 -12.63974 -12.57339 -12.53545 -12.42879 -12.21726 -12.09779 -11.52729 -11.43642 -11.26485 -11.02347 -10.85647 -10.65387 -10.57089 -9.13289 -8.19834 -6.30705 1.38883 1.41032 1.48937 2.39684 3.11219 3.39304 3.66845 3.80881 3.82533 4.09792 4.28777 4.36233 4.48182 4.60187 4.65276 4.72927 4.75954 4.82850 4.87056 4.89900 4.97515 5.00346 5.04829 5.09357 5.10189 5.21340 5.23741 5.32600 5.32896 5.38220 5.48224 5.54948 5.65358 5.73927 5.83478 6.20519 6.45681 6.67397 6.84065 7.38005 8.91669 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029805 B = 0.005907 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.224929 B = 4739.161078 C = 5378.188925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.094 3.906 3 H 0.021 0.979 4 C 0.028 3.972 5 C -0.536 4.536 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.961 3.039 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.683 5.683 14 C 0.073 3.927 15 C -0.109 4.109 16 C -0.114 4.114 17 C -0.087 4.087 18 C -0.128 4.128 19 C -0.132 4.132 20 C -0.121 4.121 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.048 0.952 24 H -0.003 1.003 25 H -0.006 1.006 26 H 0.263 0.737 27 H 0.340 0.660 28 H 0.013 0.987 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 3.401 18.565 19.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.016 4.016 3 H 0.039 0.961 4 C -0.010 4.010 5 C -0.574 4.574 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.786 3.214 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.195 1.195 13 N -0.315 5.315 14 C -0.056 4.056 15 C -0.127 4.127 16 C -0.152 4.152 17 C -0.087 4.087 18 C -0.185 4.185 19 C -0.189 4.189 20 C -0.159 4.159 21 H 0.079 0.921 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.015 0.985 25 H 0.012 0.988 26 H 0.072 0.928 27 H 0.159 0.841 28 H 0.031 0.969 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.145 3.059 18.571 19.082 hybrid contribution 1.659 0.396 -1.030 1.993 sum -1.486 3.455 17.541 17.940 Atomic orbital electron populations 1.21694 0.94513 1.01365 1.00824 1.21435 0.95143 0.94626 0.90385 0.96143 1.19136 0.94880 0.94698 0.92265 1.21474 0.93261 1.34252 1.08371 0.92656 1.25896 1.03421 0.94736 0.95277 1.70091 1.37656 1.36596 1.12673 0.85568 0.79669 0.78451 0.77749 1.19115 1.20908 1.19544 1.60604 1.33729 1.32793 1.04400 1.21991 0.99646 0.93360 0.90602 1.22455 0.99022 0.98291 0.92979 1.23031 0.97493 0.99741 0.94905 1.21815 0.96524 0.96120 0.94196 1.21596 0.97716 0.98356 1.00845 1.21700 0.98400 1.01245 0.97528 1.23059 1.01255 0.97007 0.94564 0.92073 0.92973 0.93240 0.98470 0.98777 0.92794 0.84110 0.96908 0.91055 0.90615 0.90265 0.92564 0.91709 0.91798 0.93392 0.92568 0.92237 0.91957 0.91436 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 9.42 71.98 0.68 -3.90 16 2 C 0.09 4.02 2.59 44.92 0.12 4.14 16 3 H 0.02 0.90 7.80 -2.39 -0.02 0.88 16 4 C 0.03 1.48 4.57 29.85 0.14 1.61 16 5 C -0.54 -30.20 8.12 25.60 0.21 -30.00 16 6 H 0.06 3.00 7.49 -2.91 -0.02 2.98 16 7 C 0.00 0.28 5.46 84.65 0.46 0.75 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 9 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 N -0.68 -26.78 6.31 -491.58 -3.10 -29.88 16 14 C 0.07 2.32 5.31 86.30 0.46 2.78 16 15 C -0.11 -2.91 3.54 -10.27 -0.04 -2.95 16 16 C -0.11 -2.74 6.76 31.18 0.21 -2.53 16 17 C -0.09 -1.70 1.39 -51.60 -0.07 -1.77 16 18 C -0.13 -2.36 9.07 71.98 0.65 -1.70 16 19 C -0.13 -2.13 9.20 71.98 0.66 -1.46 16 20 C -0.12 -2.59 6.79 31.12 0.21 -2.37 16 21 H 0.06 1.90 7.45 -2.39 -0.02 1.88 16 22 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.34 14.73 7.21 -89.69 -0.65 14.08 16 28 H 0.01 0.43 8.06 -2.39 -0.02 0.41 16 29 H 0.07 2.11 7.17 -2.39 -0.02 2.10 16 30 H 0.08 2.21 7.66 -2.38 -0.02 2.20 16 31 H 0.08 1.88 7.75 -2.39 -0.02 1.86 16 32 H 0.06 1.44 8.10 -2.38 -0.02 1.42 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 0.99 7.34 -2.39 -0.02 0.97 16 36 H 0.06 0.90 7.96 -2.39 -0.02 0.88 16 37 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 40 H 0.09 1.72 8.06 -2.39 -0.02 1.70 16 Total: -1.00 -61.26 316.25 3.22 -58.04 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.32 Total: 19.42 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 3.69 Total: -37.40 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -2.82 Total: -86.39 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -61.26 3.22 -58.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702026269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.718 kcal (2) G-P(sol) polarization free energy of solvation -61.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds