Wall clock time and date at job start Mon Mar 30 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.46755 * 2 1 4 4 C 1.52997 * 109.47120 * 119.98982 * 2 1 3 5 5 C 1.50704 * 109.47094 * 185.00236 * 4 2 1 6 6 H 1.07998 * 119.99988 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99742 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99784 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00466 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47175 * 89.99583 * 9 7 5 11 11 H 1.48500 * 109.47081 * 210.00327 * 9 7 5 12 12 H 1.48508 * 109.46668 * 329.99638 * 9 7 5 13 13 N 1.46893 * 109.47525 * 239.99770 * 2 1 3 14 14 C 1.46897 * 111.00220 * 84.99783 * 13 2 1 15 15 C 1.53005 * 109.47329 * 180.02562 * 14 13 2 16 16 C 1.52997 * 115.54950 * 34.41294 * 15 14 13 17 17 C 1.52999 * 117.51269 * 248.71366 * 15 14 13 18 18 C 1.52994 * 117.49816 * 180.08633 * 15 14 13 19 19 C 1.53001 * 117.50112 * 214.99848 * 18 15 14 20 20 C 1.53005 * 117.50211 * 0.02562 * 18 15 14 21 21 H 1.08994 * 109.47288 * 300.00105 * 1 2 3 22 22 H 1.09001 * 109.46607 * 60.00725 * 1 2 3 23 23 H 1.09004 * 109.46449 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47430 * 305.00687 * 4 2 1 25 25 H 1.08999 * 109.46874 * 65.00909 * 4 2 1 26 26 H 0.97009 * 120.00224 * 180.02562 * 8 7 5 27 27 H 1.00900 * 110.99901 * 208.95262 * 13 2 1 28 28 H 1.08999 * 109.47253 * 60.00160 * 14 13 2 29 29 H 1.09003 * 109.46934 * 300.00124 * 14 13 2 30 30 H 1.09002 * 109.47153 * 205.67229 * 16 15 14 31 31 H 1.09001 * 109.46832 * 85.67420 * 16 15 14 32 32 H 1.09004 * 109.47261 * 325.67402 * 16 15 14 33 33 H 1.08994 * 117.50345 * 0.02562 * 17 15 14 34 34 H 1.09008 * 117.49719 * 145.02779 * 17 15 14 35 35 H 1.08999 * 109.46805 * 60.00041 * 19 18 15 36 36 H 1.08997 * 109.47561 * 180.02562 * 19 18 15 37 37 H 1.09005 * 109.47005 * 300.00466 * 19 18 15 38 38 H 1.08991 * 109.47239 * 59.99507 * 20 18 15 39 39 H 1.09001 * 109.47042 * 179.97438 * 20 18 15 40 40 H 1.09000 * 109.46494 * 299.99944 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7210 1.2493 5 6 3.5420 -0.6146 1.3128 6 1 4.0790 -0.0853 0.5397 7 6 4.2304 -1.1930 2.3580 8 7 5.5412 -1.1006 2.4131 9 14 3.3017 -2.1092 3.6950 10 1 3.1712 -3.5391 3.3161 11 1 4.0450 -2.0024 4.9761 12 1 1.9505 -1.5143 3.8556 13 7 2.0198 -0.6925 -1.1993 14 6 2.0826 0.2225 -2.3468 15 6 2.5953 -0.5334 -3.5744 16 6 2.1669 -1.9988 -3.6735 17 6 3.9838 -0.1660 -4.1016 18 6 2.7346 0.2518 -4.8801 19 6 2.4350 -0.4885 -6.1851 20 6 2.3513 1.7329 -4.8583 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 1.6054 -0.2615 2.1370 25 1 1.7518 -1.7713 1.2058 26 1 6.0257 -1.5079 3.1483 27 1 2.9174 -1.1204 -1.0285 28 1 2.7589 1.0461 -2.1182 29 1 1.0871 0.6161 -2.5525 30 1 2.8965 -2.5514 -4.2654 31 1 1.1895 -2.0600 -4.1521 32 1 2.1094 -2.4290 -2.6736 33 1 4.5325 0.6140 -3.5738 34 1 4.5921 -0.9684 -4.5192 35 1 1.4051 -0.8454 -6.1721 36 1 2.5746 0.1889 -7.0275 37 1 3.1122 -1.3368 -6.2853 38 1 2.9765 2.2595 -4.1374 39 1 2.5002 2.1614 -5.8494 40 1 1.3042 1.8329 -4.5724 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702328518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:44 Heat of formation + Delta-G solvation = -1.060856 kcal Electronic energy + Delta-G solvation = -16139.639630 eV Core-core repulsion = 13761.168994 eV Total energy + Delta-G solvation = -2378.470636 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.18025 -36.30107 -32.68088 -31.28609 -29.40250 -28.00454 -27.82270 -26.69918 -24.56463 -22.41783 -20.14394 -19.40522 -17.52190 -16.78779 -15.33054 -14.97800 -14.56385 -14.22273 -13.82224 -13.66947 -13.23016 -12.58646 -12.58052 -12.37987 -12.04514 -11.95916 -11.84958 -11.70776 -11.62800 -11.52930 -11.25775 -11.06288 -10.77683 -10.49865 -10.28125 -9.81361 -9.51682 -9.37687 -9.20516 -9.04236 -8.54808 -7.62769 -6.05946 -4.04216 3.31818 3.38983 3.43183 3.84981 4.45000 4.67690 4.86429 4.94117 5.12525 5.23166 5.38097 5.46240 5.64394 5.66901 5.81943 5.88688 5.96518 5.97067 5.99466 6.04402 6.06358 6.12287 6.15506 6.20805 6.24087 6.37502 6.42922 6.47257 6.54018 6.73799 6.79493 6.83101 7.21913 7.31142 7.77155 7.96322 8.29182 8.49762 8.96300 9.56891 11.07079 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034004 B = 0.006422 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.238064 B = 4359.267808 C = 4671.247171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.095 3.905 3 H 0.033 0.967 4 C -0.017 4.017 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.680 5.680 14 C 0.099 3.901 15 C -0.107 4.107 16 C -0.108 4.108 17 C -0.170 4.170 18 C -0.131 4.131 19 C -0.109 4.109 20 C -0.113 4.113 21 H 0.047 0.953 22 H 0.039 0.961 23 H 0.054 0.946 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.263 0.737 27 H 0.358 0.642 28 H 0.025 0.975 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 1.831 -13.272 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.014 4.014 3 H 0.051 0.949 4 C -0.054 4.054 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.709 3.291 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.314 5.314 14 C -0.031 4.031 15 C -0.107 4.107 16 C -0.165 4.165 17 C -0.206 4.206 18 C -0.131 4.131 19 C -0.166 4.166 20 C -0.170 4.170 21 H 0.066 0.934 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.180 0.820 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.836 1.531 -13.317 15.527 hybrid contribution 0.566 0.120 1.006 1.160 sum -7.270 1.651 -12.311 14.392 Atomic orbital electron populations 1.21821 0.96721 1.01297 0.99663 1.21381 0.93162 0.96027 0.90841 0.94893 1.19766 0.96989 0.95949 0.92718 1.21083 0.89903 1.35222 1.09807 0.91308 1.25009 0.94675 0.95734 0.97856 1.69923 1.06579 1.45272 1.32316 0.86751 0.80393 0.80578 0.81381 1.20236 1.21557 1.19052 1.60583 1.34961 1.31876 1.03984 1.21367 0.99089 0.93142 0.89457 1.21663 0.98991 0.96479 0.93602 1.21222 0.99613 0.92408 1.03229 1.23404 0.90475 1.03237 1.03534 1.21624 1.02928 0.95552 0.93038 1.21280 1.01389 0.99326 0.94627 1.21309 1.01308 0.92980 1.01405 0.93433 0.94168 0.92683 0.96168 0.96089 0.92766 0.82030 0.95700 0.91825 0.93718 0.93107 0.89847 0.89070 0.89140 0.92429 0.92714 0.92621 0.92483 0.92653 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.42 37.16 0.35 -2.00 16 2 C 0.10 1.93 2.59 -67.72 -0.18 1.76 16 3 H 0.03 0.70 7.80 -51.92 -0.40 0.30 16 4 C -0.02 -0.40 3.64 -27.88 -0.10 -0.50 16 5 C -0.52 -14.54 8.67 -34.44 -0.30 -14.84 16 6 H 0.07 2.06 7.73 -52.49 -0.41 1.66 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 9 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 N -0.68 -12.93 4.83 -106.72 -0.52 -13.44 16 14 C 0.10 1.63 4.65 -3.82 -0.02 1.62 16 15 C -0.11 -1.56 2.50 -154.51 -0.39 -1.95 16 16 C -0.11 -1.52 8.76 37.16 0.33 -1.19 16 17 C -0.17 -2.37 9.11 -26.73 -0.24 -2.62 16 18 C -0.13 -1.63 2.70 -154.51 -0.42 -2.05 16 19 C -0.11 -1.16 8.88 37.16 0.33 -0.83 16 20 C -0.11 -1.30 8.88 37.16 0.33 -0.97 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.04 0.62 7.45 -51.93 -0.39 0.24 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.36 7.65 7.10 -39.29 -0.28 7.37 16 28 H 0.02 0.44 7.69 -51.93 -0.40 0.04 16 29 H 0.06 1.01 7.31 -51.93 -0.38 0.63 16 30 H 0.04 0.58 7.77 -51.93 -0.40 0.18 16 31 H 0.05 0.67 8.02 -51.93 -0.42 0.25 16 32 H 0.08 1.33 6.70 -51.93 -0.35 0.98 16 33 H 0.09 1.34 7.96 -51.93 -0.41 0.93 16 34 H 0.09 1.20 7.96 -51.92 -0.41 0.79 16 35 H 0.06 0.60 8.02 -51.93 -0.42 0.18 16 36 H 0.05 0.51 7.92 -51.93 -0.41 0.10 16 37 H 0.05 0.58 7.77 -51.93 -0.40 0.18 16 38 H 0.06 0.69 7.77 -51.93 -0.40 0.28 16 39 H 0.05 0.55 7.92 -51.93 -0.41 0.14 16 40 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 LS Contribution 312.57 15.07 4.71 4.71 Total: -1.00 -28.79 312.57 -7.60 -36.39 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.49 Total: 3.73 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -0.40 Total: -21.69 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.26 Total: -40.24 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.79 -7.60 -36.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702328518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.327 kcal (2) G-P(sol) polarization free energy of solvation -28.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds