Wall clock time and date at job start Mon Mar 30 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.46755 * 2 1 4 4 C 1.52997 * 109.47120 * 119.98982 * 2 1 3 5 5 C 1.50704 * 109.47094 * 185.00236 * 4 2 1 6 6 H 1.07998 * 119.99988 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99742 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99784 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00466 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47175 * 89.99583 * 9 7 5 11 11 H 1.48500 * 109.47081 * 210.00327 * 9 7 5 12 12 H 1.48508 * 109.46668 * 329.99638 * 9 7 5 13 13 N 1.46893 * 109.47525 * 239.99770 * 2 1 3 14 14 C 1.46897 * 111.00220 * 84.99783 * 13 2 1 15 15 C 1.53005 * 109.47329 * 180.02562 * 14 13 2 16 16 C 1.52997 * 115.54950 * 34.41294 * 15 14 13 17 17 C 1.52999 * 117.51269 * 248.71366 * 15 14 13 18 18 C 1.52994 * 117.49816 * 180.08633 * 15 14 13 19 19 C 1.53001 * 117.50112 * 214.99848 * 18 15 14 20 20 C 1.53005 * 117.50211 * 0.02562 * 18 15 14 21 21 H 1.08994 * 109.47288 * 300.00105 * 1 2 3 22 22 H 1.09001 * 109.46607 * 60.00725 * 1 2 3 23 23 H 1.09004 * 109.46449 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47430 * 305.00687 * 4 2 1 25 25 H 1.08999 * 109.46874 * 65.00909 * 4 2 1 26 26 H 0.97009 * 120.00224 * 180.02562 * 8 7 5 27 27 H 1.00900 * 110.99901 * 208.95262 * 13 2 1 28 28 H 1.08999 * 109.47253 * 60.00160 * 14 13 2 29 29 H 1.09003 * 109.46934 * 300.00124 * 14 13 2 30 30 H 1.09002 * 109.47153 * 205.67229 * 16 15 14 31 31 H 1.09001 * 109.46832 * 85.67420 * 16 15 14 32 32 H 1.09004 * 109.47261 * 325.67402 * 16 15 14 33 33 H 1.08994 * 117.50345 * 0.02562 * 17 15 14 34 34 H 1.09008 * 117.49719 * 145.02779 * 17 15 14 35 35 H 1.08999 * 109.46805 * 60.00041 * 19 18 15 36 36 H 1.08997 * 109.47561 * 180.02562 * 19 18 15 37 37 H 1.09005 * 109.47005 * 300.00466 * 19 18 15 38 38 H 1.08991 * 109.47239 * 59.99507 * 20 18 15 39 39 H 1.09001 * 109.47042 * 179.97438 * 20 18 15 40 40 H 1.09000 * 109.46494 * 299.99944 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7210 1.2493 5 6 3.5420 -0.6146 1.3128 6 1 4.0790 -0.0853 0.5397 7 6 4.2304 -1.1930 2.3580 8 7 5.5412 -1.1006 2.4131 9 14 3.3017 -2.1092 3.6950 10 1 3.1712 -3.5391 3.3161 11 1 4.0450 -2.0024 4.9761 12 1 1.9505 -1.5143 3.8556 13 7 2.0198 -0.6925 -1.1993 14 6 2.0826 0.2225 -2.3468 15 6 2.5953 -0.5334 -3.5744 16 6 2.1669 -1.9988 -3.6735 17 6 3.9838 -0.1660 -4.1016 18 6 2.7346 0.2518 -4.8801 19 6 2.4350 -0.4885 -6.1851 20 6 2.3513 1.7329 -4.8583 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3632 -1.0277 0.0005 24 1 1.6054 -0.2615 2.1370 25 1 1.7518 -1.7713 1.2058 26 1 6.0257 -1.5079 3.1483 27 1 2.9174 -1.1204 -1.0285 28 1 2.7589 1.0461 -2.1182 29 1 1.0871 0.6161 -2.5525 30 1 2.8965 -2.5514 -4.2654 31 1 1.1895 -2.0600 -4.1521 32 1 2.1094 -2.4290 -2.6736 33 1 4.5325 0.6140 -3.5738 34 1 4.5921 -0.9684 -4.5192 35 1 1.4051 -0.8454 -6.1721 36 1 2.5746 0.1889 -7.0275 37 1 3.1122 -1.3368 -6.2853 38 1 2.9765 2.2595 -4.1374 39 1 2.5002 2.1614 -5.8494 40 1 1.3042 1.8329 -4.5724 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702328518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:44 Heat of formation + Delta-G solvation = -17.405951 kcal Electronic energy + Delta-G solvation = -16140.348406 eV Core-core repulsion = 13761.168994 eV Total energy + Delta-G solvation = -2379.179412 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32496 -37.88432 -34.74666 -32.76779 -30.69271 -29.61086 -28.95789 -27.76399 -25.96886 -24.32182 -21.30685 -21.04000 -18.97778 -18.64936 -16.77090 -16.45981 -16.22227 -15.68257 -15.12599 -14.79584 -14.63365 -14.25812 -13.97988 -13.64618 -13.50966 -13.37790 -13.05448 -12.97985 -12.90694 -12.70671 -12.54635 -12.52065 -12.23279 -12.00706 -11.79061 -11.69059 -11.28354 -11.24947 -10.76329 -10.49263 -10.18564 -9.18940 -8.28795 -6.32135 1.37192 1.37897 1.49964 2.36672 2.74622 3.05258 3.39732 3.79646 3.84169 3.99117 4.22389 4.23667 4.26829 4.48264 4.63779 4.70524 4.70787 4.81464 4.84385 4.91546 4.99232 5.02527 5.06247 5.07832 5.10013 5.12523 5.19282 5.22248 5.26261 5.32710 5.36680 5.50130 5.50556 5.63558 5.69429 6.23530 6.40168 6.59095 6.74215 7.32307 8.87492 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034004 B = 0.006422 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.238064 B = 4359.267808 C = 4671.247171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.095 3.905 3 H 0.016 0.984 4 C -0.012 4.012 5 C -0.523 4.523 6 H 0.030 0.970 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.248 1.248 13 N -0.675 5.675 14 C 0.104 3.896 15 C -0.124 4.124 16 C -0.101 4.101 17 C -0.183 4.183 18 C -0.109 4.109 19 C -0.108 4.108 20 C -0.115 4.115 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.023 0.977 25 H 0.024 0.976 26 H 0.265 0.735 27 H 0.340 0.660 28 H 0.006 0.994 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.614 1.411 -14.115 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.014 4.014 3 H 0.034 0.966 4 C -0.049 4.049 5 C -0.561 4.561 6 H 0.048 0.952 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.171 1.171 13 N -0.307 5.307 14 C -0.025 4.025 15 C -0.124 4.124 16 C -0.158 4.158 17 C -0.220 4.220 18 C -0.110 4.110 19 C -0.165 4.165 20 C -0.172 4.172 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.159 0.841 28 H 0.024 0.976 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.098 1.126 -14.177 17.442 hybrid contribution 1.332 0.320 1.201 1.822 sum -8.766 1.446 -12.977 15.727 Atomic orbital electron populations 1.21720 0.93572 1.02019 1.01188 1.21359 0.95562 0.94535 0.89972 0.96633 1.19707 0.94047 0.96530 0.94660 1.21332 0.92148 1.34082 1.08573 0.95192 1.25952 0.95489 0.96882 1.00626 1.70074 1.08511 1.46935 1.33534 0.85655 0.79605 0.79395 0.77928 1.19298 1.21278 1.17150 1.60700 1.33606 1.32169 1.04223 1.21360 0.99332 0.92410 0.89399 1.21657 0.99551 0.97084 0.94139 1.21145 1.00620 0.91866 1.02181 1.23422 0.90791 1.03307 1.04503 1.21768 1.00360 0.96028 0.92803 1.21318 1.01877 0.99569 0.93755 1.21356 1.01297 0.92224 1.02328 0.92274 0.92356 0.92290 0.95858 0.95791 0.92627 0.84069 0.97606 0.90646 0.92755 0.91826 0.92058 0.90718 0.88541 0.91638 0.91011 0.92431 0.93755 0.90587 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.42 71.98 0.68 -3.38 16 2 C 0.10 3.83 2.59 44.92 0.12 3.95 16 3 H 0.02 0.67 7.80 -2.38 -0.02 0.66 16 4 C -0.01 -0.56 3.64 29.85 0.11 -0.45 16 5 C -0.52 -29.91 8.67 25.60 0.22 -29.68 16 6 H 0.03 1.89 7.73 -2.91 -0.02 1.87 16 7 C 0.01 0.43 5.47 84.65 0.46 0.90 16 8 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 9 Si 0.95 44.68 27.47 68.60 1.88 46.56 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 13 N -0.68 -25.87 4.83 -491.57 -2.37 -28.24 16 14 C 0.10 3.44 4.65 86.31 0.40 3.84 16 15 C -0.12 -3.55 2.50 -52.18 -0.13 -3.68 16 16 C -0.10 -2.74 8.76 71.98 0.63 -2.11 16 17 C -0.18 -5.15 9.11 30.59 0.28 -4.87 16 18 C -0.11 -2.55 2.70 -52.18 -0.14 -2.69 16 19 C -0.11 -1.99 8.88 71.98 0.64 -1.35 16 20 C -0.12 -2.45 8.88 71.98 0.64 -1.81 16 21 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.06 1.65 7.45 -2.39 -0.02 1.63 16 23 H 0.06 1.84 8.14 -2.38 -0.02 1.83 16 24 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 25 H 0.02 1.12 7.57 -2.39 -0.02 1.10 16 26 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 27 H 0.34 15.10 7.10 -89.69 -0.64 14.47 16 28 H 0.01 0.21 7.69 -2.39 -0.02 0.19 16 29 H 0.08 2.29 7.31 -2.39 -0.02 2.27 16 30 H 0.05 1.34 7.77 -2.39 -0.02 1.32 16 31 H 0.06 1.54 8.02 -2.39 -0.02 1.52 16 32 H 0.06 1.93 6.70 -2.38 -0.02 1.92 16 33 H 0.07 2.31 7.96 -2.39 -0.02 2.29 16 34 H 0.10 2.55 7.96 -2.38 -0.02 2.53 16 35 H 0.06 1.14 8.02 -2.39 -0.02 1.12 16 36 H 0.07 1.10 7.92 -2.39 -0.02 1.08 16 37 H 0.06 1.05 7.77 -2.38 -0.02 1.03 16 38 H 0.04 1.05 7.77 -2.39 -0.02 1.03 16 39 H 0.08 1.31 7.92 -2.39 -0.02 1.29 16 40 H 0.06 1.29 8.02 -2.39 -0.02 1.27 16 Total: -1.00 -62.62 312.57 4.00 -58.62 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.28 Total: 23.77 kcal Atomic # 6 Polarization: -45.23 SS G_CDS: 3.90 Total: -41.33 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -2.07 Total: -87.62 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Total: -62.62 4.00 -58.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702328518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.213 kcal (2) G-P(sol) polarization free energy of solvation -62.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds