Wall clock time and date at job start Mon Mar 30 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47112 * 2 1 4 4 C 1.52998 * 109.46928 * 239.99263 * 2 1 3 5 5 C 1.50708 * 109.46571 * 175.00194 * 4 2 1 6 6 H 1.07993 * 119.99970 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99486 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00230 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99412 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47116 * 60.00154 * 9 7 5 11 11 H 1.48510 * 109.46868 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47633 * 300.00041 * 9 7 5 13 13 N 1.46904 * 109.46647 * 119.99751 * 2 1 3 14 14 C 1.46896 * 111.00021 * 274.99852 * 13 2 1 15 15 C 1.53002 * 109.47400 * 180.02562 * 14 13 2 16 16 C 1.52999 * 115.55771 * 34.29380 * 15 14 13 17 17 C 1.53002 * 117.49773 * 248.61111 * 15 14 13 18 18 C 1.53000 * 60.02940 * 252.51785 * 17 15 14 19 19 C 1.53003 * 117.49792 * 107.48056 * 18 17 15 20 20 C 1.52995 * 117.49920 * 252.47484 * 18 17 15 21 21 H 1.09000 * 109.46923 * 300.00469 * 1 2 3 22 22 H 1.09008 * 109.46633 * 60.00282 * 1 2 3 23 23 H 1.08994 * 109.47112 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47746 * 295.00446 * 4 2 1 25 25 H 1.09001 * 109.47205 * 55.00626 * 4 2 1 26 26 H 0.96999 * 119.99384 * 179.97438 * 8 7 5 27 27 H 1.00899 * 110.99930 * 38.95102 * 13 2 1 28 28 H 1.09005 * 109.46897 * 60.00263 * 14 13 2 29 29 H 1.08996 * 109.47104 * 300.00592 * 14 13 2 30 30 H 1.08994 * 109.47641 * 325.70811 * 16 15 14 31 31 H 1.09000 * 109.46660 * 85.71096 * 16 15 14 32 32 H 1.08997 * 109.47098 * 205.70277 * 16 15 14 33 33 H 1.09002 * 117.49918 * 145.01819 * 17 15 14 34 34 H 1.09002 * 117.49754 * 0.02562 * 17 15 14 35 35 H 1.08998 * 109.47616 * 111.39176 * 19 18 17 36 36 H 1.08996 * 109.47220 * 231.39461 * 19 18 17 37 37 H 1.09006 * 109.46853 * 351.38997 * 19 18 17 38 38 H 1.09001 * 109.47296 * 8.60761 * 20 18 17 39 39 H 1.09007 * 109.46973 * 128.61247 * 20 18 17 40 40 H 1.09008 * 109.47059 * 248.60629 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5420 -0.6151 -1.3125 6 1 4.0790 -0.0863 -0.5391 7 6 4.2304 -1.1929 -2.3581 8 7 3.5765 -1.8373 -3.2998 9 14 6.0922 -1.0617 -2.4363 10 1 6.6838 -1.6887 -1.2271 11 1 6.5872 -1.7619 -3.6488 12 1 6.4856 0.3690 -2.4949 13 7 2.0196 -0.6925 1.1995 14 6 2.0824 0.2226 2.3469 15 6 2.5961 -0.5328 3.5743 16 6 3.6317 -1.6232 3.2926 17 6 1.6102 -0.7736 4.7193 18 6 2.7335 0.2525 4.8810 19 6 2.3467 1.7327 4.8597 20 6 3.8958 -0.1125 5.8065 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.7516 -1.7716 -1.2055 25 1 1.6055 -0.2619 -2.1369 26 1 4.0609 -2.2435 -4.0355 27 1 1.4494 -1.4978 1.4101 28 1 1.0870 0.6164 2.5525 29 1 2.7588 1.0462 2.1182 30 1 3.4113 -2.0950 2.3352 31 1 4.6266 -1.1792 3.2585 32 1 3.5951 -2.3720 4.0838 33 1 1.6994 -1.7089 5.2720 34 1 0.5955 -0.3943 4.5979 35 1 2.4940 2.1611 5.8510 36 1 2.9710 2.2610 4.1391 37 1 1.2995 1.8304 4.5735 38 1 3.8074 -1.1567 6.1065 39 1 4.8392 0.0360 5.2810 40 1 3.8690 0.5234 6.6916 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702328519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:46 Heat of formation + Delta-G solvation = 0.570052 kcal Electronic energy + Delta-G solvation = -16135.494165 eV Core-core repulsion = 13757.094251 eV Total energy + Delta-G solvation = -2378.399914 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.22525 -36.27056 -32.67322 -31.13001 -29.27998 -27.99586 -27.21321 -26.65541 -24.47860 -22.79577 -20.23194 -19.72233 -17.52788 -16.13264 -15.21233 -15.00417 -14.37526 -14.17550 -13.91379 -13.60332 -13.33973 -12.66508 -12.54688 -12.21450 -12.04062 -11.95449 -11.72692 -11.62714 -11.58814 -11.38784 -11.23009 -10.91658 -10.63202 -10.55681 -10.38867 -9.97960 -9.48115 -9.27684 -9.07016 -8.91784 -8.19981 -7.46030 -5.82555 -3.79678 3.44233 3.47740 3.51511 3.79769 4.61042 4.62806 4.81066 4.89212 5.09877 5.25604 5.42225 5.54921 5.62310 5.64691 5.78021 5.85749 5.86760 5.92536 5.93782 5.95709 5.98733 6.07492 6.10209 6.15609 6.22858 6.36713 6.41719 6.51541 6.53934 6.68528 6.91014 7.09747 7.64085 7.75916 8.10173 8.13523 8.25625 8.66616 9.25549 9.81184 11.29639 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.007057 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.935429 B = 3966.530514 C = 4618.826861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 H 0.062 0.938 4 C 0.034 3.966 5 C -0.486 4.486 6 H 0.058 0.942 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.659 5.659 14 C 0.099 3.901 15 C -0.104 4.104 16 C -0.110 4.110 17 C -0.175 4.175 18 C -0.129 4.129 19 C -0.113 4.113 20 C -0.110 4.110 21 H 0.035 0.965 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.257 0.743 27 H 0.331 0.669 28 H 0.018 0.982 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.584 3.651 15.778 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.206 1.206 13 N -0.288 5.288 14 C -0.031 4.031 15 C -0.104 4.104 16 C -0.167 4.167 17 C -0.211 4.211 18 C -0.130 4.130 19 C -0.170 4.170 20 C -0.167 4.167 21 H 0.054 0.946 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.148 0.852 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.880 3.641 15.441 16.124 hybrid contribution -0.003 0.120 0.136 0.182 sum -2.882 3.762 15.577 16.282 Atomic orbital electron populations 1.22554 0.99684 1.01124 1.00458 1.21791 0.89758 0.98129 0.92401 0.91941 1.19103 0.96189 0.95361 0.89715 1.21116 0.91913 1.32736 1.06668 0.92421 1.25003 0.97884 0.96004 0.96092 1.69958 1.35203 1.37099 1.12383 0.86714 0.86575 0.77896 0.77060 1.20385 1.21691 1.20624 1.60543 1.57384 1.08555 1.02347 1.21398 0.97484 0.95008 0.89165 1.21724 0.99913 0.99866 0.88947 1.21244 0.96933 0.95843 1.02659 1.23394 0.94583 1.00001 1.03166 1.21623 0.98494 0.93273 0.99591 1.21310 1.00989 0.93276 1.01427 1.21286 0.96868 1.00835 0.97732 0.94550 0.92588 0.93071 0.96536 0.96597 0.93358 0.85185 0.96408 0.91252 0.89331 0.92760 0.94015 0.89266 0.89497 0.92654 0.92152 0.92709 0.92654 0.92186 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 9.16 37.16 0.34 -2.73 16 2 C 0.09 1.81 2.53 -67.71 -0.17 1.63 16 3 H 0.06 1.31 7.80 -51.93 -0.40 0.91 16 4 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 5 C -0.49 -13.82 8.84 -34.43 -0.30 -14.12 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.73 13.29 55.43 0.74 -26.99 16 9 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.66 -12.31 4.48 -106.72 -0.48 -12.79 16 14 C 0.10 1.58 4.65 -3.82 -0.02 1.56 16 15 C -0.10 -1.47 2.51 -154.47 -0.39 -1.85 16 16 C -0.11 -1.65 8.77 37.16 0.33 -1.32 16 17 C -0.17 -2.12 9.11 -26.73 -0.24 -2.37 16 18 C -0.13 -1.56 2.70 -154.47 -0.42 -1.98 16 19 C -0.11 -1.25 8.88 37.16 0.33 -0.92 16 20 C -0.11 -1.19 8.88 37.15 0.33 -0.86 16 21 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 22 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 23 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.33 5.88 8.36 -39.29 -0.33 5.55 16 28 H 0.02 0.27 7.07 -51.93 -0.37 -0.10 16 29 H 0.07 1.19 7.93 -51.93 -0.41 0.77 16 30 H 0.09 1.54 6.69 -51.93 -0.35 1.19 16 31 H 0.05 0.83 8.03 -51.93 -0.42 0.42 16 32 H 0.04 0.55 7.78 -51.93 -0.40 0.14 16 33 H 0.09 1.02 7.96 -51.93 -0.41 0.61 16 34 H 0.09 1.03 7.96 -51.93 -0.41 0.61 16 35 H 0.05 0.53 7.92 -51.93 -0.41 0.12 16 36 H 0.06 0.70 8.02 -51.93 -0.42 0.28 16 37 H 0.05 0.60 7.78 -51.93 -0.40 0.19 16 38 H 0.05 0.57 7.78 -51.93 -0.40 0.17 16 39 H 0.06 0.67 8.03 -51.92 -0.42 0.26 16 40 H 0.05 0.51 7.92 -51.92 -0.41 0.10 16 LS Contribution 317.86 15.07 4.79 4.79 Total: -1.00 -29.66 317.86 -8.00 -37.67 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.59 Total: 0.84 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -0.44 Total: -20.89 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.26 Total: -39.78 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.66 -8.00 -37.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702328519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.239 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds