Wall clock time and date at job start Mon Mar 30 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47112 * 2 1 4 4 C 1.52998 * 109.46928 * 239.99263 * 2 1 3 5 5 C 1.50708 * 109.46571 * 175.00194 * 4 2 1 6 6 H 1.07993 * 119.99970 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99486 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00230 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99412 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47116 * 60.00154 * 9 7 5 11 11 H 1.48510 * 109.46868 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47633 * 300.00041 * 9 7 5 13 13 N 1.46904 * 109.46647 * 119.99751 * 2 1 3 14 14 C 1.46896 * 111.00021 * 274.99852 * 13 2 1 15 15 C 1.53002 * 109.47400 * 180.02562 * 14 13 2 16 16 C 1.52999 * 115.55771 * 34.29380 * 15 14 13 17 17 C 1.53002 * 117.49773 * 248.61111 * 15 14 13 18 18 C 1.53000 * 60.02940 * 252.51785 * 17 15 14 19 19 C 1.53003 * 117.49792 * 107.48056 * 18 17 15 20 20 C 1.52995 * 117.49920 * 252.47484 * 18 17 15 21 21 H 1.09000 * 109.46923 * 300.00469 * 1 2 3 22 22 H 1.09008 * 109.46633 * 60.00282 * 1 2 3 23 23 H 1.08994 * 109.47112 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47746 * 295.00446 * 4 2 1 25 25 H 1.09001 * 109.47205 * 55.00626 * 4 2 1 26 26 H 0.96999 * 119.99384 * 179.97438 * 8 7 5 27 27 H 1.00899 * 110.99930 * 38.95102 * 13 2 1 28 28 H 1.09005 * 109.46897 * 60.00263 * 14 13 2 29 29 H 1.08996 * 109.47104 * 300.00592 * 14 13 2 30 30 H 1.08994 * 109.47641 * 325.70811 * 16 15 14 31 31 H 1.09000 * 109.46660 * 85.71096 * 16 15 14 32 32 H 1.08997 * 109.47098 * 205.70277 * 16 15 14 33 33 H 1.09002 * 117.49918 * 145.01819 * 17 15 14 34 34 H 1.09002 * 117.49754 * 0.02562 * 17 15 14 35 35 H 1.08998 * 109.47616 * 111.39176 * 19 18 17 36 36 H 1.08996 * 109.47220 * 231.39461 * 19 18 17 37 37 H 1.09006 * 109.46853 * 351.38997 * 19 18 17 38 38 H 1.09001 * 109.47296 * 8.60761 * 20 18 17 39 39 H 1.09007 * 109.46973 * 128.61247 * 20 18 17 40 40 H 1.09008 * 109.47059 * 248.60629 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5420 -0.6151 -1.3125 6 1 4.0790 -0.0863 -0.5391 7 6 4.2304 -1.1929 -2.3581 8 7 3.5765 -1.8373 -3.2998 9 14 6.0922 -1.0617 -2.4363 10 1 6.6838 -1.6887 -1.2271 11 1 6.5872 -1.7619 -3.6488 12 1 6.4856 0.3690 -2.4949 13 7 2.0196 -0.6925 1.1995 14 6 2.0824 0.2226 2.3469 15 6 2.5961 -0.5328 3.5743 16 6 3.6317 -1.6232 3.2926 17 6 1.6102 -0.7736 4.7193 18 6 2.7335 0.2525 4.8810 19 6 2.3467 1.7327 4.8597 20 6 3.8958 -0.1125 5.8065 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.7516 -1.7716 -1.2055 25 1 1.6055 -0.2619 -2.1369 26 1 4.0609 -2.2435 -4.0355 27 1 1.4494 -1.4978 1.4101 28 1 1.0870 0.6164 2.5525 29 1 2.7588 1.0462 2.1182 30 1 3.4113 -2.0950 2.3352 31 1 4.6266 -1.1792 3.2585 32 1 3.5951 -2.3720 4.0838 33 1 1.6994 -1.7089 5.2720 34 1 0.5955 -0.3943 4.5979 35 1 2.4940 2.1611 5.8510 36 1 2.9710 2.2610 4.1391 37 1 1.2995 1.8304 4.5735 38 1 3.8074 -1.1567 6.1065 39 1 4.8392 0.0360 5.2810 40 1 3.8690 0.5234 6.6916 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702328519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:45 Heat of formation + Delta-G solvation = -15.914027 kcal Electronic energy + Delta-G solvation = -16136.208969 eV Core-core repulsion = 13757.094251 eV Total energy + Delta-G solvation = -2379.114718 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.29812 -37.82910 -34.76429 -32.55688 -30.55686 -29.11195 -28.93538 -27.68664 -25.85346 -24.76769 -21.45504 -21.21538 -18.68505 -18.28189 -16.63426 -16.45221 -16.12961 -15.44517 -15.08956 -14.76383 -14.62818 -14.19674 -13.92560 -13.50050 -13.49440 -13.18985 -13.15725 -12.96589 -12.76062 -12.69549 -12.62217 -12.48371 -12.36900 -12.15714 -11.88051 -11.66046 -11.14905 -11.10118 -10.48019 -10.45443 -10.14693 -8.93378 -8.07975 -6.12388 1.41297 1.44387 1.51768 2.48389 2.78787 3.23854 3.41348 3.82465 3.90449 4.01258 4.23675 4.24927 4.27527 4.45902 4.58438 4.65011 4.73634 4.83370 4.85980 4.94447 4.96509 5.02288 5.08833 5.09027 5.12226 5.21598 5.23880 5.30482 5.32551 5.34742 5.50830 5.53560 5.65773 5.72881 5.92008 6.37109 6.53774 6.77600 7.01336 7.52808 9.04037 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.007057 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.935429 B = 3966.530514 C = 4618.826861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 H 0.055 0.945 4 C 0.039 3.961 5 C -0.496 4.496 6 H 0.054 0.946 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.955 3.045 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.673 5.673 14 C 0.108 3.892 15 C -0.128 4.128 16 C -0.103 4.103 17 C -0.160 4.160 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.111 4.111 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.052 0.948 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.258 0.742 27 H 0.335 0.665 28 H 0.032 0.968 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 4.272 17.901 18.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 H 0.073 0.927 4 C 0.001 3.999 5 C -0.535 4.535 6 H 0.073 0.927 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.304 5.304 14 C -0.021 4.021 15 C -0.128 4.128 16 C -0.160 4.160 17 C -0.197 4.197 18 C -0.122 4.122 19 C -0.171 4.171 20 C -0.168 4.168 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.067 0.933 27 H 0.153 0.847 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.810 4.272 17.582 18.311 hybrid contribution -0.039 -0.077 -0.509 0.516 sum -2.849 4.196 17.074 17.811 Atomic orbital electron populations 1.22399 0.96837 1.01702 1.01755 1.21453 0.91985 0.96730 0.90977 0.92681 1.18984 0.95089 0.94166 0.91632 1.21436 0.93393 1.32253 1.06398 0.92749 1.25854 1.02830 0.95742 0.95808 1.70089 1.37094 1.38100 1.13049 0.85652 0.80718 0.78297 0.77219 1.19748 1.21201 1.19619 1.60371 1.57802 1.09336 1.02871 1.21309 0.97862 0.94172 0.88780 1.21605 1.01264 1.00722 0.89200 1.21128 0.96743 0.96451 1.01727 1.23441 0.94636 1.00476 1.01166 1.21770 0.98866 0.93845 0.97696 1.21338 1.00918 0.92528 1.02289 1.21314 0.95878 1.01579 0.97983 0.91872 0.92604 0.92863 0.99105 0.99123 0.93313 0.84651 0.95001 0.92928 0.92223 0.93830 0.92254 0.88260 0.88769 0.90855 0.93030 0.92473 0.92178 0.92946 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.57 9.16 71.98 0.66 -4.91 16 2 C 0.10 4.03 2.53 44.92 0.11 4.14 16 3 H 0.05 2.32 7.80 -2.39 -0.02 2.31 16 4 C 0.04 2.06 4.65 29.85 0.14 2.20 16 5 C -0.50 -28.83 8.84 25.60 0.23 -28.60 16 6 H 0.05 3.13 7.74 -2.91 -0.02 3.11 16 7 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 8 N -0.94 -58.84 13.29 21.45 0.28 -58.56 16 9 Si 0.96 46.36 29.54 68.60 2.03 48.38 16 10 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 13 N -0.67 -25.14 4.48 -491.56 -2.20 -27.34 16 14 C 0.11 3.32 4.65 86.30 0.40 3.72 16 15 C -0.13 -3.40 2.51 -52.16 -0.13 -3.53 16 16 C -0.10 -3.04 8.77 71.98 0.63 -2.41 16 17 C -0.16 -3.44 9.11 30.60 0.28 -3.16 16 18 C -0.12 -2.63 2.70 -52.16 -0.14 -2.77 16 19 C -0.11 -2.23 8.88 71.98 0.64 -1.59 16 20 C -0.11 -2.10 8.88 71.98 0.64 -1.46 16 21 H 0.06 1.76 7.45 -2.39 -0.02 1.74 16 22 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 23 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 27 H 0.34 11.86 8.36 -89.69 -0.75 11.12 16 28 H 0.03 0.89 7.07 -2.38 -0.02 0.88 16 29 H 0.05 1.78 7.93 -2.39 -0.02 1.76 16 30 H 0.06 2.09 6.69 -2.39 -0.02 2.07 16 31 H 0.04 1.33 8.03 -2.39 -0.02 1.31 16 32 H 0.06 1.48 7.78 -2.39 -0.02 1.46 16 33 H 0.10 1.95 7.96 -2.39 -0.02 1.93 16 34 H 0.09 1.91 7.96 -2.39 -0.02 1.89 16 35 H 0.07 1.17 7.92 -2.39 -0.02 1.16 16 36 H 0.05 1.10 8.02 -2.39 -0.02 1.08 16 37 H 0.06 1.09 7.78 -2.38 -0.02 1.07 16 38 H 0.06 1.08 7.78 -2.39 -0.02 1.06 16 39 H 0.05 1.08 8.03 -2.38 -0.02 1.06 16 40 H 0.07 1.12 7.92 -2.38 -0.02 1.10 16 Total: -1.00 -64.01 317.86 4.25 -59.76 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.22 Total: 16.04 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 3.92 Total: -38.29 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -1.92 Total: -85.90 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -64.01 4.25 -59.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702328519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.851 kcal (2) G-P(sol) polarization free energy of solvation -64.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds