Wall clock time and date at job start Mon Mar 30 2020 03:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47329 * 2 1 4 4 C 1.48541 * 110.99857 * 57.08707 * 3 2 1 5 5 C 1.54928 * 103.22869 * 159.72330 * 4 3 2 6 6 C 1.54594 * 102.92382 * 322.58713 * 5 4 3 7 7 H 1.08999 * 110.31446 * 263.04728 * 6 5 4 8 8 C 1.50695 * 110.31242 * 140.87294 * 6 5 4 9 9 H 1.08008 * 120.00106 * 248.71230 * 8 6 5 10 10 C 1.37879 * 120.00140 * 68.71568 * 8 6 5 11 11 N 1.31514 * 119.99589 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00029 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46906 * 60.00187 * 12 10 8 14 14 H 1.48503 * 109.46655 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47485 * 299.99920 * 12 10 8 16 16 C 1.47903 * 111.00389 * 174.48191 * 3 2 1 17 17 H 1.09000 * 109.91498 * 333.51257 * 16 3 2 18 18 C 1.53002 * 109.91273 * 94.60793 * 16 3 2 19 19 C 1.53003 * 109.46881 * 187.62861 * 18 16 3 20 20 C 1.52996 * 109.47136 * 66.49148 * 19 18 16 21 21 C 1.52995 * 109.46927 * 186.49203 * 19 18 16 22 22 H 1.08998 * 109.46947 * 299.99733 * 1 2 3 23 23 H 1.08997 * 109.47095 * 60.00128 * 1 2 3 24 24 H 1.09000 * 109.46462 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47445 * 240.00347 * 2 1 3 26 26 H 1.09004 * 109.47043 * 120.00248 * 2 1 3 27 27 H 1.09000 * 110.66685 * 278.16278 * 4 3 2 28 28 H 1.08998 * 110.66264 * 41.11848 * 4 3 2 29 29 H 1.09004 * 110.72423 * 80.94572 * 5 4 3 30 30 H 1.08996 * 110.72703 * 204.05147 * 5 4 3 31 31 H 0.97001 * 119.99283 * 180.02562 * 11 10 8 32 32 H 1.08999 * 109.46876 * 307.62985 * 18 16 3 33 33 H 1.09006 * 109.47334 * 67.62926 * 18 16 3 34 34 H 1.08998 * 109.47194 * 306.49028 * 19 18 16 35 35 H 1.09003 * 109.47176 * 60.37818 * 20 19 18 36 36 H 1.08998 * 109.46995 * 180.38367 * 20 19 18 37 37 H 1.08999 * 109.47330 * 300.38729 * 20 19 18 38 38 H 1.09003 * 109.47712 * 60.00059 * 21 19 18 39 39 H 1.08999 * 109.47099 * 179.97438 * 21 19 18 40 40 H 1.09007 * 109.47337 * 299.99944 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4868 2.1380 1.1642 5 6 2.4732 3.3248 1.3005 6 6 3.8363 2.6830 0.9541 7 1 4.3664 2.4057 1.8652 8 6 4.6683 3.6334 0.1323 9 1 4.8746 3.4125 -0.9046 10 6 5.1663 4.7850 0.7040 11 7 4.9147 5.0542 1.9665 12 14 6.1970 5.9635 -0.3149 13 1 5.3970 6.4518 -1.4668 14 1 6.6074 7.1164 0.5264 15 1 7.4054 5.2595 -0.8143 16 6 3.4922 1.4266 0.1328 17 1 3.8434 0.5353 0.6527 18 6 4.1381 1.5108 -1.2517 19 6 5.6549 1.3619 -1.1167 20 6 5.9878 -0.0518 -0.6356 21 6 6.3142 1.6069 -2.4754 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.4781 2.4975 0.9607 28 1 1.4994 1.5189 2.0612 29 1 2.2271 4.1144 0.5904 30 1 2.4736 3.7110 2.3197 31 1 5.2647 5.8646 2.3686 32 1 3.7493 0.7119 -1.8831 33 1 3.9064 2.4757 -1.7027 34 1 6.0285 2.0886 -0.3953 35 1 5.6201 -0.7782 -1.3604 36 1 7.0679 -0.1556 -0.5329 37 1 5.5123 -0.2287 0.3291 38 1 6.0771 2.6140 -2.8181 39 1 7.3948 1.5013 -2.3791 40 1 5.9406 0.8802 -3.1969 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709988115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:10 Heat of formation + Delta-G solvation = -8.646158 kcal Electronic energy + Delta-G solvation = -16993.386427 eV Core-core repulsion = 14614.586868 eV Total energy + Delta-G solvation = -2378.799559 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.80380 -35.51504 -33.36452 -31.55442 -29.25254 -28.15635 -26.62907 -25.01482 -23.83848 -22.07833 -19.94545 -19.48648 -18.28498 -16.38687 -15.31230 -14.57880 -14.51436 -14.02188 -13.85541 -13.49342 -12.81111 -12.60247 -12.20242 -11.90452 -11.87807 -11.70053 -11.55473 -11.23871 -10.93921 -10.80054 -10.68990 -10.51823 -10.33253 -10.10608 -9.85243 -9.76444 -9.61670 -9.50656 -8.96019 -8.44260 -8.31855 -7.60137 -5.95132 -3.92583 3.35556 3.40416 3.43234 4.49179 4.69555 5.34624 5.42051 5.54711 5.65904 5.72478 5.73671 5.83231 5.92362 6.05973 6.08482 6.15450 6.18013 6.30126 6.35762 6.38217 6.41467 6.47694 6.52913 6.58381 6.60202 6.79281 6.85433 6.99610 7.18886 7.28126 7.35978 7.51807 7.58447 7.67657 7.93875 7.99809 8.12519 8.53667 9.07012 9.68037 11.15585 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.011362 C = 0.008360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.850800 B = 2463.776742 C = 3348.599120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 N -0.514 5.514 4 C 0.031 3.969 5 C -0.096 4.096 6 C 0.047 3.953 7 H 0.030 0.970 8 C -0.510 4.510 9 H 0.082 0.918 10 C 0.060 3.940 11 N -0.893 5.893 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.071 3.929 17 H 0.030 0.970 18 C -0.076 4.076 19 C -0.112 4.112 20 C -0.142 4.142 21 C -0.140 4.140 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.061 0.939 28 H 0.026 0.974 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.258 0.742 32 H 0.029 0.971 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.038 0.962 36 H 0.042 0.958 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.043 0.957 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 -7.993 -3.756 9.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 N -0.239 5.239 4 C -0.097 4.097 5 C -0.135 4.135 6 C 0.028 3.972 7 H 0.048 0.952 8 C -0.548 4.548 9 H 0.100 0.900 10 C -0.141 4.141 11 N -0.531 5.531 12 Si 0.710 3.290 13 H -0.203 1.203 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.036 4.036 17 H 0.048 0.952 18 C -0.114 4.114 19 C -0.130 4.130 20 C -0.199 4.199 21 C -0.197 4.197 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.157 -7.639 -4.108 9.230 hybrid contribution 0.756 0.248 0.346 0.867 sum -2.401 -7.392 -3.762 8.634 Atomic orbital electron populations 1.21793 0.95753 1.00663 1.02256 1.22178 0.95250 0.91331 0.99783 1.64676 1.07723 1.10667 1.40816 1.23279 0.99036 0.96596 0.90742 1.22457 0.95265 0.95300 1.00467 1.19469 0.92876 0.90355 0.94529 0.95194 1.21625 1.30706 1.04378 0.98044 0.90039 1.25012 0.96440 0.97900 0.94748 1.69974 1.45687 1.25814 1.11650 0.86819 0.80989 0.80884 0.80347 1.20315 1.21613 1.20203 1.22579 0.85439 0.98792 0.96817 0.95244 1.21372 0.93168 1.00968 0.95904 1.21556 0.96109 0.97412 0.97961 1.21860 1.00018 0.97489 1.00529 1.21775 0.99457 1.00922 0.97585 0.92834 0.92153 0.93167 0.91595 0.95861 0.92009 0.95554 0.92112 0.92658 0.93260 0.95201 0.90297 0.86741 0.94248 0.93857 0.93045 0.92940 0.93778 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.70 37.16 0.36 -1.65 16 2 C 0.04 0.70 5.60 -3.82 -0.02 0.68 16 3 N -0.51 -9.96 4.99 -222.57 -1.11 -11.07 16 4 C 0.03 0.61 5.29 -1.90 -0.01 0.60 16 5 C -0.10 -2.23 6.03 -24.88 -0.15 -2.38 16 6 C 0.05 1.13 2.65 -90.42 -0.24 0.89 16 7 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 8 C -0.51 -13.06 5.63 -34.44 -0.19 -13.25 16 9 H 0.08 2.02 3.87 -52.48 -0.20 1.82 16 10 C 0.06 1.62 5.37 -17.82 -0.10 1.52 16 11 N -0.89 -25.26 12.87 55.43 0.71 -24.54 16 12 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 16 C 0.07 1.48 2.41 -66.64 -0.16 1.32 16 17 H 0.03 0.61 5.80 -51.93 -0.30 0.31 16 18 C -0.08 -1.50 3.96 -26.73 -0.11 -1.61 16 19 C -0.11 -2.09 2.00 -90.62 -0.18 -2.27 16 20 C -0.14 -2.33 9.00 37.16 0.33 -2.00 16 21 C -0.14 -2.34 9.18 37.15 0.34 -2.00 16 22 H 0.05 0.73 6.87 -51.93 -0.36 0.38 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.02 0.38 7.94 -51.93 -0.41 -0.03 16 27 H 0.06 1.12 7.65 -51.93 -0.40 0.72 16 28 H 0.03 0.50 8.02 -51.93 -0.42 0.08 16 29 H 0.06 1.51 7.86 -51.93 -0.41 1.10 16 30 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 1.72 6.19 -51.93 -0.32 1.40 16 34 H 0.11 2.51 5.47 -51.93 -0.28 2.23 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.87 6.44 -51.93 -0.33 0.54 16 38 H 0.05 0.91 8.13 -51.93 -0.42 0.48 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 299.49 15.07 4.51 4.51 Total: -1.00 -26.69 299.49 -8.25 -34.93 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.22 Total: 0.39 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -0.12 Total: -20.15 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.40 Total: -35.62 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.69 -8.25 -34.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709988115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.288 kcal (2) G-P(sol) polarization free energy of solvation -26.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds