Wall clock time and date at job start Mon Mar 30 2020 03:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47329 * 2 1 4 4 C 1.48541 * 110.99857 * 57.08707 * 3 2 1 5 5 C 1.54928 * 103.22869 * 159.72330 * 4 3 2 6 6 C 1.54594 * 102.92382 * 322.58713 * 5 4 3 7 7 H 1.08999 * 110.31446 * 263.04728 * 6 5 4 8 8 C 1.50695 * 110.31242 * 140.87294 * 6 5 4 9 9 H 1.08008 * 120.00106 * 248.71230 * 8 6 5 10 10 C 1.37879 * 120.00140 * 68.71568 * 8 6 5 11 11 N 1.31514 * 119.99589 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00029 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46906 * 60.00187 * 12 10 8 14 14 H 1.48503 * 109.46655 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47485 * 299.99920 * 12 10 8 16 16 C 1.47903 * 111.00389 * 174.48191 * 3 2 1 17 17 H 1.09000 * 109.91498 * 333.51257 * 16 3 2 18 18 C 1.53002 * 109.91273 * 94.60793 * 16 3 2 19 19 C 1.53003 * 109.46881 * 187.62861 * 18 16 3 20 20 C 1.52996 * 109.47136 * 66.49148 * 19 18 16 21 21 C 1.52995 * 109.46927 * 186.49203 * 19 18 16 22 22 H 1.08998 * 109.46947 * 299.99733 * 1 2 3 23 23 H 1.08997 * 109.47095 * 60.00128 * 1 2 3 24 24 H 1.09000 * 109.46462 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47445 * 240.00347 * 2 1 3 26 26 H 1.09004 * 109.47043 * 120.00248 * 2 1 3 27 27 H 1.09000 * 110.66685 * 278.16278 * 4 3 2 28 28 H 1.08998 * 110.66264 * 41.11848 * 4 3 2 29 29 H 1.09004 * 110.72423 * 80.94572 * 5 4 3 30 30 H 1.08996 * 110.72703 * 204.05147 * 5 4 3 31 31 H 0.97001 * 119.99283 * 180.02562 * 11 10 8 32 32 H 1.08999 * 109.46876 * 307.62985 * 18 16 3 33 33 H 1.09006 * 109.47334 * 67.62926 * 18 16 3 34 34 H 1.08998 * 109.47194 * 306.49028 * 19 18 16 35 35 H 1.09003 * 109.47176 * 60.37818 * 20 19 18 36 36 H 1.08998 * 109.46995 * 180.38367 * 20 19 18 37 37 H 1.08999 * 109.47330 * 300.38729 * 20 19 18 38 38 H 1.09003 * 109.47712 * 60.00059 * 21 19 18 39 39 H 1.08999 * 109.47099 * 179.97438 * 21 19 18 40 40 H 1.09007 * 109.47337 * 299.99944 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4868 2.1380 1.1642 5 6 2.4732 3.3248 1.3005 6 6 3.8363 2.6830 0.9541 7 1 4.3664 2.4057 1.8652 8 6 4.6683 3.6334 0.1323 9 1 4.8746 3.4125 -0.9046 10 6 5.1663 4.7850 0.7040 11 7 4.9147 5.0542 1.9665 12 14 6.1970 5.9635 -0.3149 13 1 5.3970 6.4518 -1.4668 14 1 6.6074 7.1164 0.5264 15 1 7.4054 5.2595 -0.8143 16 6 3.4922 1.4266 0.1328 17 1 3.8434 0.5353 0.6527 18 6 4.1381 1.5108 -1.2517 19 6 5.6549 1.3619 -1.1167 20 6 5.9878 -0.0518 -0.6356 21 6 6.3142 1.6069 -2.4754 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 0.4781 2.4975 0.9607 28 1 1.4994 1.5189 2.0612 29 1 2.2271 4.1144 0.5904 30 1 2.4736 3.7110 2.3197 31 1 5.2647 5.8646 2.3686 32 1 3.7493 0.7119 -1.8831 33 1 3.9064 2.4757 -1.7027 34 1 6.0285 2.0886 -0.3953 35 1 5.6201 -0.7782 -1.3604 36 1 7.0679 -0.1556 -0.5329 37 1 5.5123 -0.2287 0.3291 38 1 6.0771 2.6140 -2.8181 39 1 7.3948 1.5013 -2.3791 40 1 5.9406 0.8802 -3.1969 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709988115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:10 Heat of formation + Delta-G solvation = -23.474090 kcal Electronic energy + Delta-G solvation = -16994.029415 eV Core-core repulsion = 14614.586868 eV Total energy + Delta-G solvation = -2379.442547 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.45328 -36.98932 -35.14960 -33.27645 -30.87061 -29.74333 -27.96962 -26.73879 -25.63071 -23.50514 -21.64540 -21.04291 -19.94935 -18.30271 -16.95052 -16.35682 -16.08551 -15.55967 -15.45101 -14.95776 -14.33213 -14.18938 -13.83187 -13.44880 -13.39702 -13.03444 -12.93143 -12.83616 -12.66370 -12.41317 -12.27248 -12.13066 -11.81836 -11.72380 -11.55413 -11.44317 -11.30686 -11.11299 -10.73663 -10.40045 -10.35318 -9.15027 -8.02682 -6.03189 1.44362 1.45084 1.51054 2.49696 3.20276 3.29672 4.08732 4.16733 4.23621 4.32232 4.37360 4.39441 4.48127 4.56150 4.68736 4.72876 4.83654 4.86113 4.92926 4.98281 5.03955 5.08971 5.14909 5.16818 5.23758 5.27858 5.33635 5.41107 5.43181 5.56940 5.68761 5.76241 5.78369 5.93025 6.00089 6.29440 6.41955 6.54856 7.02642 7.59324 9.08244 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.011362 C = 0.008360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.850800 B = 2463.776742 C = 3348.599120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.040 3.960 3 N -0.522 5.522 4 C 0.044 3.956 5 C -0.092 4.092 6 C 0.040 3.960 7 H -0.008 1.008 8 C -0.503 4.503 9 H 0.090 0.910 10 C 0.007 3.993 11 N -0.929 5.929 12 Si 0.937 3.063 13 H -0.273 1.273 14 H -0.294 1.294 15 H -0.267 1.267 16 C 0.079 3.921 17 H 0.032 0.968 18 C -0.068 4.068 19 C -0.112 4.112 20 C -0.136 4.136 21 C -0.137 4.137 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.024 0.976 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.038 0.962 30 H 0.033 0.967 31 H 0.254 0.746 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.055 0.945 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 -9.742 -5.477 11.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.088 4.088 3 N -0.247 5.247 4 C -0.084 4.084 5 C -0.131 4.131 6 C 0.021 3.979 7 H 0.011 0.989 8 C -0.541 4.541 9 H 0.108 0.892 10 C -0.190 4.190 11 N -0.570 5.570 12 Si 0.763 3.237 13 H -0.199 1.199 14 H -0.220 1.220 15 H -0.192 1.192 16 C -0.029 4.029 17 H 0.050 0.950 18 C -0.105 4.105 19 C -0.131 4.131 20 C -0.193 4.193 21 C -0.194 4.194 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.587 -9.403 -5.846 11.639 hybrid contribution 0.874 0.736 0.895 1.451 sum -2.713 -8.668 -4.951 10.344 Atomic orbital electron populations 1.21753 0.93595 1.02411 1.02089 1.22309 0.97047 0.89118 1.00295 1.64703 1.06560 1.13040 1.40399 1.23147 0.98736 0.95027 0.91453 1.22253 0.96258 0.96184 0.98378 1.19430 0.92855 0.92119 0.93511 0.98944 1.21977 1.29614 1.04054 0.98442 0.89217 1.25715 0.97977 0.99717 0.95626 1.70115 1.47402 1.26261 1.13197 0.85925 0.79908 0.78910 0.78915 1.19871 1.22047 1.19210 1.22414 0.86803 0.96779 0.96896 0.94996 1.21265 0.93923 1.00243 0.95098 1.21435 0.95423 0.97944 0.98333 1.21783 1.00837 0.96269 1.00382 1.21736 1.00117 1.00906 0.96625 0.93053 0.92245 0.90532 0.90558 0.95784 0.90069 0.94785 0.94313 0.94835 0.93754 0.93204 0.92723 0.90606 0.92134 0.92704 0.94163 0.94090 0.92623 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.70 71.98 0.70 -2.67 16 2 C 0.04 1.19 5.60 86.30 0.48 1.67 16 3 N -0.52 -19.40 4.99 -858.07 -4.29 -23.69 16 4 C 0.04 1.68 5.29 86.64 0.46 2.14 16 5 C -0.09 -4.40 6.03 31.80 0.19 -4.20 16 6 C 0.04 1.99 2.65 -10.66 -0.03 1.96 16 7 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 8 C -0.50 -26.40 5.63 25.60 0.14 -26.25 16 9 H 0.09 4.50 3.87 -2.91 -0.01 4.49 16 10 C 0.01 0.38 5.37 84.66 0.45 0.83 16 11 N -0.93 -54.64 12.87 21.45 0.28 -54.37 16 12 Si 0.94 43.76 29.54 68.60 2.03 45.79 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 14 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 16 C 0.08 3.23 2.41 45.06 0.11 3.34 16 17 H 0.03 1.29 5.80 -2.39 -0.01 1.28 16 18 C -0.07 -2.57 3.96 30.60 0.12 -2.45 16 19 C -0.11 -4.06 2.00 -10.80 -0.02 -4.08 16 20 C -0.14 -4.16 9.00 71.98 0.65 -3.51 16 21 C -0.14 -4.24 9.18 71.98 0.66 -3.58 16 22 H 0.05 1.25 6.87 -2.39 -0.02 1.23 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.02 0.71 7.94 -2.38 -0.02 0.69 16 27 H 0.08 2.80 7.65 -2.39 -0.02 2.78 16 28 H 0.03 1.25 8.02 -2.39 -0.02 1.23 16 29 H 0.04 1.98 7.86 -2.38 -0.02 1.96 16 30 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 2.34 6.19 -2.38 -0.01 2.33 16 34 H 0.08 3.35 5.47 -2.39 -0.01 3.33 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.30 6.44 -2.39 -0.02 1.29 16 38 H 0.04 1.34 8.13 -2.39 -0.02 1.32 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -58.41 299.49 2.91 -55.50 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.98 Total: 13.58 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 3.92 Total: -36.80 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -4.01 Total: -78.05 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -58.41 2.91 -55.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709988115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.022 kcal (2) G-P(sol) polarization free energy of solvation -58.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds