Wall clock time and date at job start Mon Mar 30 2020 03:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46798 * 2 1 4 4 C 1.46850 * 111.00182 * 292.80012 * 3 2 1 5 5 C 1.53031 * 109.52340 * 174.16204 * 4 3 2 6 6 C 1.53122 * 109.27852 * 59.17810 * 5 4 3 7 7 C 1.53114 * 109.16018 * 302.34382 * 6 5 4 8 8 H 1.09001 * 109.50325 * 177.59961 * 7 6 5 9 9 C 1.50699 * 109.50589 * 297.71339 * 7 6 5 10 10 H 1.07999 * 119.99952 * 84.50660 * 9 7 6 11 11 C 1.37878 * 120.00221 * 264.50694 * 9 7 6 12 12 N 1.31518 * 120.00165 * 179.97438 * 11 9 7 13 13 Si 1.86801 * 119.99862 * 359.97438 * 11 9 7 14 14 H 1.48508 * 109.47004 * 89.99933 * 13 11 9 15 15 H 1.48499 * 109.46857 * 209.99740 * 13 11 9 16 16 H 1.48493 * 109.47043 * 329.99850 * 13 11 9 17 17 C 1.46843 * 110.99989 * 168.59030 * 3 2 1 18 18 H 1.08999 * 109.46317 * 65.82100 * 17 3 2 19 19 C 1.53007 * 109.45171 * 305.85219 * 17 3 2 20 20 C 1.52999 * 109.47168 * 184.31248 * 19 17 3 21 21 C 1.53001 * 109.46922 * 304.30589 * 19 17 3 22 22 H 1.09003 * 109.46866 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47537 * 299.99641 * 1 2 3 24 24 H 1.09004 * 109.47171 * 60.00252 * 1 2 3 25 25 H 1.08999 * 109.47136 * 240.00617 * 2 1 3 26 26 H 1.08998 * 109.47201 * 120.00197 * 2 1 3 27 27 H 1.09000 * 109.45613 * 294.17549 * 4 3 2 28 28 H 1.08999 * 109.46231 * 54.14590 * 4 3 2 29 29 H 1.09000 * 109.50359 * 299.23601 * 5 4 3 30 30 H 1.09005 * 109.50618 * 179.11787 * 5 4 3 31 31 H 1.09001 * 109.51981 * 182.44211 * 6 5 4 32 32 H 1.08997 * 109.52406 * 62.25186 * 6 5 4 33 33 H 0.96992 * 120.00169 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.47165 * 64.30848 * 19 17 3 35 35 H 1.08999 * 109.46832 * 187.51533 * 20 19 17 36 36 H 1.09006 * 109.46632 * 307.50737 * 20 19 17 37 37 H 1.08994 * 109.47694 * 67.50927 * 20 19 17 38 38 H 1.09004 * 109.47113 * 32.82897 * 21 19 17 39 39 H 1.09001 * 109.46986 * 152.82223 * 21 19 17 40 40 H 1.08995 * 109.47277 * 272.82472 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6941 2.0583 -1.2638 5 6 2.0876 3.5344 -1.1730 6 6 3.5883 3.6410 -0.8880 7 6 3.9082 2.8908 0.4078 8 1 4.9817 2.9269 0.5937 9 6 3.1761 3.5356 1.5564 10 1 2.1520 3.2633 1.7650 11 6 3.8136 4.4731 2.3410 12 7 3.1745 5.0362 3.3431 13 14 5.5852 4.9435 1.9808 14 1 5.6109 6.0848 1.0310 15 1 6.2599 5.3355 3.2442 16 1 6.2929 3.7841 1.3807 17 6 3.4620 1.4333 0.2712 18 1 4.0020 0.9637 -0.5509 19 6 3.7613 0.6845 1.5715 20 6 5.2465 0.8255 1.9110 21 6 2.9208 1.2752 2.7053 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.2425 1.5857 -2.0787 28 1 0.6235 1.9788 -1.4525 29 1 1.5294 4.0109 -0.3672 30 1 1.8603 4.0303 -2.1167 31 1 3.8648 4.6897 -0.7796 32 1 4.1479 3.1991 -1.7124 33 1 3.6229 5.6959 3.8949 34 1 3.5153 -0.3703 1.4482 35 1 5.4875 0.1855 2.7597 36 1 5.8457 0.5284 1.0502 37 1 5.4643 1.8629 2.1647 38 1 1.9660 1.6201 2.3081 39 1 2.7445 0.5115 3.4628 40 1 3.4528 2.1147 3.1526 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709988868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:03 Heat of formation + Delta-G solvation = 0.251198 kcal Electronic energy + Delta-G solvation = -17632.361963 eV Core-core repulsion = 15253.948222 eV Total energy + Delta-G solvation = -2378.413741 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.22731 -34.58008 -33.85784 -31.86318 -29.21652 -28.83306 -26.34441 -25.12810 -23.58081 -22.09967 -20.57117 -19.43305 -17.89931 -16.44607 -15.42094 -14.76033 -14.29390 -14.13606 -13.66122 -13.24760 -12.97235 -12.54798 -12.34941 -12.26327 -11.94921 -11.61843 -11.28603 -11.20936 -11.00205 -10.87245 -10.62659 -10.41962 -10.22379 -9.95959 -9.94103 -9.76464 -9.47845 -9.08823 -9.01526 -8.53771 -8.18254 -7.41532 -5.87002 -3.75019 3.34578 3.42025 3.45081 4.54472 4.58266 5.35395 5.44206 5.56859 5.63627 5.74869 5.83765 5.87572 5.94196 6.05756 6.08856 6.14114 6.18968 6.31056 6.33383 6.45780 6.49364 6.54896 6.58884 6.64020 6.72197 6.94332 6.96238 7.00906 7.13431 7.18304 7.29647 7.48378 7.53570 7.90788 7.92316 8.03886 8.07520 8.80077 9.28657 9.75381 11.25401 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027404 B = 0.012469 C = 0.011049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.496048 B = 2245.041229 C = 2533.492812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 N -0.511 5.511 4 C 0.064 3.936 5 C -0.105 4.105 6 C -0.114 4.114 7 C 0.003 3.997 8 H 0.045 0.955 9 C -0.462 4.462 10 H 0.096 0.904 11 C 0.062 3.938 12 N -0.907 5.907 13 Si 0.854 3.146 14 H -0.282 1.282 15 H -0.293 1.293 16 H -0.262 1.262 17 C 0.109 3.891 18 H 0.007 0.993 19 C -0.074 4.074 20 C -0.145 4.145 21 C -0.127 4.127 22 H 0.047 0.953 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.016 0.984 26 H 0.078 0.922 27 H 0.013 0.987 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.023 0.977 33 H 0.258 0.742 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.003 0.997 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.815 -8.022 -6.580 10.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 N -0.235 5.235 4 C -0.064 4.064 5 C -0.142 4.142 6 C -0.152 4.152 7 C -0.016 4.016 8 H 0.063 0.937 9 C -0.500 4.500 10 H 0.114 0.886 11 C -0.137 4.137 12 N -0.548 5.548 13 Si 0.684 3.316 14 H -0.209 1.209 15 H -0.220 1.220 16 H -0.188 1.188 17 C 0.001 3.999 18 H 0.025 0.975 19 C -0.092 4.092 20 C -0.202 4.202 21 C -0.184 4.184 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.034 0.966 26 H 0.096 0.904 27 H 0.031 0.969 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.022 0.978 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.031 -7.633 -6.051 9.795 hybrid contribution 1.525 -0.078 -0.927 1.787 sum 0.495 -7.710 -6.978 10.411 Atomic orbital electron populations 1.21779 0.95750 1.00378 1.02368 1.22141 0.95466 0.90741 1.00068 1.61817 1.15889 1.13455 1.32360 1.22011 0.99225 0.95646 0.89530 1.21430 0.97893 0.94580 1.00338 1.21804 0.95063 1.00311 0.98032 1.19553 0.97200 0.90371 0.94432 0.93714 1.21083 1.01038 1.19051 1.08839 0.88573 1.24978 0.96539 0.96625 0.95558 1.69880 1.36654 1.29170 1.19051 0.87233 0.87880 0.79047 0.77462 1.20883 1.22000 1.18769 1.21635 0.85764 0.98405 0.94140 0.97480 1.20989 0.95222 0.96604 0.96432 1.21929 0.96226 1.02643 0.99447 1.22133 1.02131 0.99135 0.94974 0.93349 0.91718 0.93175 0.96572 0.90401 0.96868 0.91857 0.89723 0.94075 0.93101 0.95838 0.93208 0.93918 0.93880 0.94453 0.91280 0.90259 0.97833 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.87 37.16 0.37 -1.65 16 2 C 0.04 0.70 5.31 -3.82 -0.02 0.68 16 3 N -0.51 -9.53 2.66 -226.69 -0.60 -10.13 16 4 C 0.06 1.12 5.30 -3.84 -0.02 1.10 16 5 C -0.10 -1.99 5.84 -26.65 -0.16 -2.15 16 6 C -0.11 -2.36 5.47 -26.61 -0.15 -2.51 16 7 C 0.00 0.08 1.27 -91.70 -0.12 -0.04 16 8 H 0.04 1.04 3.43 -51.93 -0.18 0.87 16 9 C -0.46 -11.72 4.13 -34.44 -0.14 -11.86 16 10 H 0.10 2.69 5.85 -52.49 -0.31 2.38 16 11 C 0.06 1.68 4.93 -17.82 -0.09 1.59 16 12 N -0.91 -26.64 13.96 55.43 0.77 -25.87 16 13 Si 0.85 20.94 26.64 -169.99 -4.53 16.41 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.26 -6.10 5.54 56.52 0.31 -5.79 16 17 C 0.11 2.16 1.62 -67.72 -0.11 2.05 16 18 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 19 C -0.07 -1.42 2.20 -90.62 -0.20 -1.62 16 20 C -0.14 -2.70 8.40 37.16 0.31 -2.39 16 21 C -0.13 -2.70 7.46 37.16 0.28 -2.43 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.05 0.67 6.48 -51.93 -0.34 0.34 16 25 H 0.02 0.25 8.11 -51.93 -0.42 -0.17 16 26 H 0.08 1.25 5.54 -51.93 -0.29 0.97 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 1.01 6.27 -51.93 -0.33 0.69 16 29 H 0.08 1.83 7.33 -51.93 -0.38 1.45 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 1.10 7.96 -51.93 -0.41 0.69 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.04 0.75 6.34 -51.93 -0.33 0.42 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.46 5.38 -51.93 -0.28 1.18 16 38 H 0.08 1.81 5.17 -51.93 -0.27 1.54 16 39 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 40 H 0.09 2.12 5.55 -51.93 -0.29 1.83 16 LS Contribution 279.79 15.07 4.22 4.22 Total: -1.00 -27.08 279.79 -7.02 -34.11 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.84 Total: 0.49 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -0.04 Total: -19.22 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.17 Total: -36.00 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.53 Total: 16.41 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.08 -7.02 -34.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709988868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.359 kcal (2) G-P(sol) polarization free energy of solvation -27.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds