Wall clock time and date at job start Mon Mar 30 2020 03:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.46798 * 2 1 4 4 C 1.46850 * 111.00182 * 292.80012 * 3 2 1 5 5 C 1.53031 * 109.52340 * 174.16204 * 4 3 2 6 6 C 1.53122 * 109.27852 * 59.17810 * 5 4 3 7 7 C 1.53114 * 109.16018 * 302.34382 * 6 5 4 8 8 H 1.09001 * 109.50325 * 177.59961 * 7 6 5 9 9 C 1.50699 * 109.50589 * 297.71339 * 7 6 5 10 10 H 1.07999 * 119.99952 * 84.50660 * 9 7 6 11 11 C 1.37878 * 120.00221 * 264.50694 * 9 7 6 12 12 N 1.31518 * 120.00165 * 179.97438 * 11 9 7 13 13 Si 1.86801 * 119.99862 * 359.97438 * 11 9 7 14 14 H 1.48508 * 109.47004 * 89.99933 * 13 11 9 15 15 H 1.48499 * 109.46857 * 209.99740 * 13 11 9 16 16 H 1.48493 * 109.47043 * 329.99850 * 13 11 9 17 17 C 1.46843 * 110.99989 * 168.59030 * 3 2 1 18 18 H 1.08999 * 109.46317 * 65.82100 * 17 3 2 19 19 C 1.53007 * 109.45171 * 305.85219 * 17 3 2 20 20 C 1.52999 * 109.47168 * 184.31248 * 19 17 3 21 21 C 1.53001 * 109.46922 * 304.30589 * 19 17 3 22 22 H 1.09003 * 109.46866 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47537 * 299.99641 * 1 2 3 24 24 H 1.09004 * 109.47171 * 60.00252 * 1 2 3 25 25 H 1.08999 * 109.47136 * 240.00617 * 2 1 3 26 26 H 1.08998 * 109.47201 * 120.00197 * 2 1 3 27 27 H 1.09000 * 109.45613 * 294.17549 * 4 3 2 28 28 H 1.08999 * 109.46231 * 54.14590 * 4 3 2 29 29 H 1.09000 * 109.50359 * 299.23601 * 5 4 3 30 30 H 1.09005 * 109.50618 * 179.11787 * 5 4 3 31 31 H 1.09001 * 109.51981 * 182.44211 * 6 5 4 32 32 H 1.08997 * 109.52406 * 62.25186 * 6 5 4 33 33 H 0.96992 * 120.00169 * 180.02562 * 12 11 9 34 34 H 1.09002 * 109.47165 * 64.30848 * 19 17 3 35 35 H 1.08999 * 109.46832 * 187.51533 * 20 19 17 36 36 H 1.09006 * 109.46632 * 307.50737 * 20 19 17 37 37 H 1.08994 * 109.47694 * 67.50927 * 20 19 17 38 38 H 1.09004 * 109.47113 * 32.82897 * 21 19 17 39 39 H 1.09001 * 109.46986 * 152.82223 * 21 19 17 40 40 H 1.08995 * 109.47277 * 272.82472 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6941 2.0583 -1.2638 5 6 2.0876 3.5344 -1.1730 6 6 3.5883 3.6410 -0.8880 7 6 3.9082 2.8908 0.4078 8 1 4.9817 2.9269 0.5937 9 6 3.1761 3.5356 1.5564 10 1 2.1520 3.2633 1.7650 11 6 3.8136 4.4731 2.3410 12 7 3.1745 5.0362 3.3431 13 14 5.5852 4.9435 1.9808 14 1 5.6109 6.0848 1.0310 15 1 6.2599 5.3355 3.2442 16 1 6.2929 3.7841 1.3807 17 6 3.4620 1.4333 0.2712 18 1 4.0020 0.9637 -0.5509 19 6 3.7613 0.6845 1.5715 20 6 5.2465 0.8255 1.9110 21 6 2.9208 1.2752 2.7053 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.2425 1.5857 -2.0787 28 1 0.6235 1.9788 -1.4525 29 1 1.5294 4.0109 -0.3672 30 1 1.8603 4.0303 -2.1167 31 1 3.8648 4.6897 -0.7796 32 1 4.1479 3.1991 -1.7124 33 1 3.6229 5.6959 3.8949 34 1 3.5153 -0.3703 1.4482 35 1 5.4875 0.1855 2.7597 36 1 5.8457 0.5284 1.0502 37 1 5.4643 1.8629 2.1647 38 1 1.9660 1.6201 2.3081 39 1 2.7445 0.5115 3.4628 40 1 3.4528 2.1147 3.1526 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709988868.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:03 Heat of formation + Delta-G solvation = -14.880250 kcal Electronic energy + Delta-G solvation = -17633.018112 eV Core-core repulsion = 15253.948222 eV Total energy + Delta-G solvation = -2379.069890 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.77596 -36.11083 -35.43834 -33.79161 -30.65940 -30.37004 -28.04554 -26.91343 -25.00363 -23.74394 -21.96925 -21.08527 -19.57018 -18.35528 -16.91777 -16.34366 -15.92184 -15.70895 -15.30193 -14.76508 -14.52382 -14.29776 -13.96571 -13.84040 -13.44131 -13.13478 -12.96334 -12.66336 -12.50755 -12.48303 -12.22451 -11.92540 -11.87284 -11.68645 -11.51375 -11.46476 -11.20589 -10.76365 -10.68403 -10.49601 -10.13226 -8.81358 -7.98960 -5.86667 1.36540 1.40774 1.45770 2.50676 3.19889 3.34892 4.06761 4.12064 4.22479 4.32294 4.40784 4.49343 4.56705 4.62889 4.69749 4.73691 4.80982 4.84977 4.95246 5.00836 5.01761 5.07482 5.13635 5.26288 5.32699 5.35112 5.38036 5.42271 5.48684 5.53591 5.66310 5.74172 5.85936 5.97218 6.23121 6.50434 6.58368 6.77040 7.16348 7.65343 9.16745 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027404 B = 0.012469 C = 0.011049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.496048 B = 2245.041229 C = 2533.492812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.045 3.955 3 N -0.533 5.533 4 C 0.067 3.933 5 C -0.102 4.102 6 C -0.115 4.115 7 C -0.002 4.002 8 H 0.038 0.962 9 C -0.424 4.424 10 H 0.064 0.936 11 C 0.007 3.993 12 N -0.958 5.958 13 Si 0.900 3.100 14 H -0.285 1.285 15 H -0.303 1.303 16 H -0.239 1.239 17 C 0.112 3.888 18 H 0.021 0.979 19 C -0.072 4.072 20 C -0.143 4.143 21 C -0.115 4.115 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.031 0.969 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.048 0.952 33 H 0.252 0.748 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.059 0.941 39 H 0.018 0.982 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 -10.251 -8.731 13.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 N -0.258 5.258 4 C -0.061 4.061 5 C -0.140 4.140 6 C -0.154 4.154 7 C -0.021 4.021 8 H 0.056 0.944 9 C -0.463 4.463 10 H 0.082 0.918 11 C -0.186 4.186 12 N -0.602 5.602 13 Si 0.729 3.271 14 H -0.211 1.211 15 H -0.231 1.231 16 H -0.164 1.164 17 C 0.003 3.997 18 H 0.038 0.962 19 C -0.091 4.091 20 C -0.201 4.201 21 C -0.172 4.172 22 H 0.091 0.909 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.549 -9.887 -8.233 12.878 hybrid contribution 1.287 0.556 -0.276 1.429 sum 0.737 -9.331 -8.509 12.650 Atomic orbital electron populations 1.21734 0.94443 1.01833 1.01701 1.22187 0.96512 0.89044 1.00537 1.61761 1.15052 1.15582 1.33420 1.22004 1.00446 0.94180 0.89473 1.21376 0.96150 0.96131 1.00303 1.21756 0.96644 0.99112 0.97853 1.19571 0.96301 0.92392 0.93852 0.94435 1.21100 0.99476 1.17136 1.08601 0.91791 1.25530 0.99728 0.97509 0.95870 1.70025 1.38234 1.30929 1.21010 0.86462 0.84559 0.79293 0.76766 1.21128 1.23063 1.16365 1.21495 0.86929 0.96370 0.94866 0.96171 1.21001 0.95176 0.97795 0.95097 1.21892 0.96017 1.01176 1.01018 1.21887 1.01021 0.98247 0.96059 0.90857 0.93572 0.92631 0.95075 0.90719 0.95317 0.90260 0.93295 0.91458 0.94881 0.93358 0.93877 0.91272 0.92157 0.92523 0.94261 0.92210 0.96293 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.87 71.98 0.71 -2.78 16 2 C 0.04 1.28 5.31 86.30 0.46 1.73 16 3 N -0.53 -18.71 2.66 -871.12 -2.32 -21.03 16 4 C 0.07 2.14 5.30 86.32 0.46 2.59 16 5 C -0.10 -3.71 5.84 30.65 0.18 -3.53 16 6 C -0.12 -4.59 5.47 30.67 0.17 -4.42 16 7 C 0.00 -0.09 1.27 -11.49 -0.01 -0.11 16 8 H 0.04 1.69 3.43 -2.39 -0.01 1.68 16 9 C -0.42 -21.97 4.13 25.60 0.11 -21.87 16 10 H 0.06 3.72 5.85 -2.91 -0.02 3.70 16 11 C 0.01 0.40 4.93 84.65 0.42 0.81 16 12 N -0.96 -58.88 13.96 21.45 0.30 -58.58 16 13 Si 0.90 43.89 26.64 68.60 1.83 45.72 16 14 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 15 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 16 H -0.24 -10.67 5.54 99.48 0.55 -10.12 16 17 C 0.11 4.18 1.62 44.94 0.07 4.25 16 18 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 19 C -0.07 -2.61 2.20 -10.79 -0.02 -2.63 16 20 C -0.14 -5.01 8.40 71.98 0.60 -4.40 16 21 C -0.12 -4.88 7.46 71.98 0.54 -4.35 16 22 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.32 6.48 -2.38 -0.02 1.30 16 25 H 0.03 0.81 8.11 -2.39 -0.02 0.79 16 26 H 0.07 2.16 5.54 -2.39 -0.01 2.15 16 27 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 2.29 6.27 -2.39 -0.01 2.28 16 29 H 0.05 2.12 7.33 -2.39 -0.02 2.10 16 30 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.03 1.40 7.96 -2.39 -0.02 1.38 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.07 2.18 6.34 -2.39 -0.02 2.16 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.04 1.60 5.38 -2.39 -0.01 1.58 16 38 H 0.06 2.76 5.17 -2.39 -0.01 2.74 16 39 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 40 H 0.05 2.39 5.55 -2.39 -0.01 2.38 16 Total: -1.00 -59.86 279.79 4.32 -55.54 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.84 Total: 13.05 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 3.67 Total: -34.70 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -2.02 Total: -79.61 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.83 Total: 45.72 kcal Total: -59.86 4.32 -55.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709988868.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.662 kcal (2) G-P(sol) polarization free energy of solvation -59.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds