Wall clock time and date at job start Mon Mar 30 2020 03:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.46742 * 2 1 4 4 C 1.46847 * 111.00224 * 50.47911 * 3 2 1 5 5 C 1.53037 * 109.52303 * 185.84234 * 4 3 2 6 6 C 1.53122 * 109.27443 * 300.81736 * 5 4 3 7 7 C 1.53118 * 109.16248 * 57.66024 * 6 5 4 8 8 H 1.08995 * 109.50325 * 62.27776 * 7 6 5 9 9 C 1.50694 * 109.53859 * 182.38527 * 7 6 5 10 10 H 1.07995 * 120.00567 * 115.70332 * 9 7 6 11 11 C 1.37882 * 119.99700 * 295.69942 * 9 7 6 12 12 N 1.31512 * 120.00092 * 179.97438 * 11 9 7 13 13 Si 1.86799 * 119.99996 * 0.02562 * 11 9 7 14 14 H 1.48502 * 109.47024 * 89.99801 * 13 11 9 15 15 H 1.48503 * 109.47096 * 209.99486 * 13 11 9 16 16 H 1.48503 * 109.47125 * 329.99791 * 13 11 9 17 17 C 1.46843 * 110.99989 * 174.69003 * 3 2 1 18 18 H 1.09006 * 109.46213 * 294.17708 * 17 3 2 19 19 C 1.53007 * 109.45488 * 54.14745 * 17 3 2 20 20 C 1.52997 * 109.47022 * 66.56962 * 19 17 3 21 21 C 1.53000 * 109.47171 * 186.56798 * 19 17 3 22 22 H 1.09005 * 109.46693 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47233 * 300.00031 * 1 2 3 24 24 H 1.08994 * 109.47013 * 60.00512 * 1 2 3 25 25 H 1.08995 * 109.47233 * 239.99969 * 2 1 3 26 26 H 1.09003 * 109.46943 * 119.99241 * 2 1 3 27 27 H 1.08995 * 109.46344 * 65.82517 * 4 3 2 28 28 H 1.09002 * 109.46226 * 305.85696 * 4 3 2 29 29 H 1.09003 * 109.50366 * 180.88183 * 5 4 3 30 30 H 1.08998 * 109.50703 * 60.75701 * 5 4 3 31 31 H 1.08996 * 109.52366 * 297.74974 * 6 5 4 32 32 H 1.09006 * 109.57178 * 177.59126 * 6 5 4 33 33 H 0.97004 * 120.00328 * 180.02562 * 12 11 9 34 34 H 1.09000 * 109.46681 * 306.57090 * 19 17 3 35 35 H 1.09003 * 109.47091 * 56.63667 * 20 19 17 36 36 H 1.08992 * 109.47136 * 176.64494 * 20 19 17 37 37 H 1.09000 * 109.46880 * 296.64234 * 20 19 17 38 38 H 1.09005 * 109.46897 * 40.18846 * 21 19 17 39 39 H 1.08998 * 109.46809 * 160.18325 * 21 19 17 40 40 H 1.08995 * 109.46946 * 280.18908 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3725 2.1720 1.0575 5 6 1.7953 3.6377 0.9357 6 6 3.3183 3.7364 1.0596 7 6 3.9679 2.8697 -0.0227 8 1 3.6897 3.2472 -1.0067 9 6 5.4666 2.9142 0.1281 10 1 6.0112 2.0158 0.3781 11 6 6.1427 4.1022 -0.0531 12 7 7.4506 4.1412 0.0790 13 14 5.2008 5.6565 -0.4848 14 1 4.8060 6.3587 0.7627 15 1 6.0634 6.5470 -1.3023 16 1 3.9843 5.2994 -1.2581 17 6 3.4820 1.4263 0.1269 18 1 3.7725 1.0448 1.1058 19 6 4.1129 0.5602 -0.9654 20 6 3.8414 1.1878 -2.3341 21 6 5.6229 0.4701 -0.7362 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 1.6729 1.7872 2.0320 28 1 0.2899 2.0966 0.9554 29 1 1.3272 4.2188 1.7303 30 1 1.4831 4.0273 -0.0333 31 1 3.6274 3.3832 2.0434 32 1 3.6288 4.7734 0.9309 33 1 7.9263 4.9770 -0.0481 34 1 3.6799 -0.4395 -0.9317 35 1 4.2218 2.2092 -2.3474 36 1 4.3409 0.6038 -3.1070 37 1 2.7679 1.1975 -2.5229 38 1 5.8229 0.3646 0.3302 39 1 6.0201 -0.3947 -1.2676 40 1 6.1015 1.3762 -1.1077 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709988870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:05 Heat of formation + Delta-G solvation = 6.545046 kcal Electronic energy + Delta-G solvation = -17403.712367 eV Core-core repulsion = 15025.571548 eV Total energy + Delta-G solvation = -2378.140819 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.28535 -34.96868 -33.98549 -32.03084 -29.34956 -29.01970 -26.61713 -25.07821 -23.86310 -22.06200 -20.32891 -19.81567 -18.15227 -16.68188 -15.45510 -14.73578 -14.50736 -14.17310 -14.03263 -13.68886 -12.92210 -12.66355 -12.53529 -12.21025 -12.06099 -11.60978 -11.41268 -11.27670 -11.19839 -10.87351 -10.64300 -10.59327 -10.30107 -10.18354 -10.03971 -9.76844 -9.57529 -9.38595 -8.95896 -8.53379 -8.20271 -7.66854 -5.98008 -3.94329 3.32684 3.43956 3.47176 4.43317 4.49471 5.26022 5.29963 5.39572 5.46188 5.61677 5.67113 5.74719 5.81546 5.88585 5.98332 6.05244 6.15300 6.22909 6.29041 6.37831 6.39091 6.49724 6.51156 6.59894 6.63474 6.77921 6.85637 6.91255 6.93595 7.03060 7.23565 7.29559 7.51523 7.65876 7.74736 7.78055 7.98218 8.61987 9.06162 9.64088 11.12373 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028776 B = 0.011795 C = 0.009445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.791254 B = 2373.327178 C = 2963.905338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 N -0.536 5.536 4 C 0.059 3.941 5 C -0.120 4.120 6 C -0.123 4.123 7 C 0.023 3.977 8 H 0.042 0.958 9 C -0.520 4.520 10 H 0.103 0.897 11 C 0.071 3.929 12 N -0.904 5.904 13 Si 0.873 3.127 14 H -0.282 1.282 15 H -0.299 1.299 16 H -0.263 1.263 17 C 0.108 3.892 18 H 0.030 0.970 19 C -0.073 4.073 20 C -0.136 4.136 21 C -0.146 4.146 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.261 0.739 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.020 0.980 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.185 -5.681 -0.470 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 N -0.261 5.261 4 C -0.069 4.069 5 C -0.158 4.158 6 C -0.161 4.161 7 C 0.003 3.997 8 H 0.060 0.940 9 C -0.558 4.558 10 H 0.121 0.879 11 C -0.130 4.130 12 N -0.543 5.543 13 Si 0.703 3.297 14 H -0.209 1.209 15 H -0.227 1.227 16 H -0.188 1.188 17 C 0.001 3.999 18 H 0.047 0.953 19 C -0.092 4.092 20 C -0.193 4.193 21 C -0.203 4.203 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.039 0.961 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.157 -5.362 -0.927 12.413 hybrid contribution -0.236 0.643 0.747 1.014 sum -11.393 -4.719 -0.180 12.333 Atomic orbital electron populations 1.21908 0.95933 1.00960 1.02167 1.22079 0.94770 0.90715 1.00413 1.62040 1.07300 1.10155 1.46583 1.22063 0.98233 0.94319 0.92320 1.21663 0.98156 0.95009 1.00958 1.22027 0.92579 1.00270 1.01237 1.19294 0.95781 0.89681 0.94899 0.93988 1.21739 0.89701 0.97676 1.46694 0.87941 1.24958 0.94588 0.98359 0.95062 1.69883 1.06908 1.26790 1.50679 0.87026 0.80186 0.84077 0.78363 1.20898 1.22651 1.18788 1.21677 0.83725 0.98450 0.96081 0.95253 1.20956 0.96334 0.96514 0.95361 1.21775 1.00367 1.01808 0.95348 1.22419 0.95168 1.02175 1.00512 0.92940 0.92727 0.92054 0.90589 0.95822 0.95824 0.91383 0.93094 0.91988 0.92866 0.93558 0.92884 0.93604 0.91189 0.94676 0.93278 0.93344 0.96120 0.87673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.36 37.16 0.35 -1.49 16 2 C 0.05 0.71 5.16 -3.82 -0.02 0.69 16 3 N -0.54 -9.34 4.19 -226.68 -0.95 -10.29 16 4 C 0.06 0.96 5.00 -3.83 -0.02 0.95 16 5 C -0.12 -2.15 6.09 -26.65 -0.16 -2.32 16 6 C -0.12 -2.67 4.83 -26.61 -0.13 -2.80 16 7 C 0.02 0.51 0.86 -91.69 -0.08 0.43 16 8 H 0.04 1.02 4.97 -51.93 -0.26 0.76 16 9 C -0.52 -13.63 6.72 -34.44 -0.23 -13.86 16 10 H 0.10 2.81 4.27 -52.49 -0.22 2.58 16 11 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 12 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 13 Si 0.87 21.76 24.58 -169.99 -4.18 17.58 16 14 H -0.28 -6.96 6.89 56.52 0.39 -6.57 16 15 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 16 H -0.26 -6.36 6.42 56.52 0.36 -6.00 16 17 C 0.11 2.16 1.27 -67.72 -0.09 2.07 16 18 H 0.03 0.63 8.00 -51.93 -0.42 0.22 16 19 C -0.07 -1.37 2.35 -90.62 -0.21 -1.58 16 20 C -0.14 -2.50 8.54 37.16 0.32 -2.19 16 21 C -0.15 -2.95 7.48 37.16 0.28 -2.67 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.64 6.19 -51.93 -0.32 0.32 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 1.11 6.40 -51.93 -0.33 0.78 16 26 H 0.02 0.35 8.13 -51.93 -0.42 -0.07 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.97 5.83 -51.93 -0.30 0.67 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 1.06 3.89 -51.93 -0.20 0.86 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 34 H 0.05 0.79 6.07 -51.93 -0.31 0.47 16 35 H 0.07 1.46 6.09 -51.93 -0.32 1.14 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.86 7.89 -51.93 -0.41 0.45 16 38 H 0.05 1.02 6.82 -51.93 -0.35 0.66 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.10 2.47 5.52 -51.93 -0.29 2.18 16 LS Contribution 279.78 15.07 4.22 4.22 Total: -1.00 -27.77 279.78 -6.96 -34.73 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.73 Total: 0.75 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -0.09 Total: -20.88 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.18 Total: -36.39 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.18 Total: 17.58 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.77 -6.96 -34.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709988870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.276 kcal (2) G-P(sol) polarization free energy of solvation -27.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds