Wall clock time and date at job start Mon Mar 30 2020 03:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.46742 * 2 1 4 4 C 1.46847 * 111.00224 * 50.47911 * 3 2 1 5 5 C 1.53037 * 109.52303 * 185.84234 * 4 3 2 6 6 C 1.53122 * 109.27443 * 300.81736 * 5 4 3 7 7 C 1.53118 * 109.16248 * 57.66024 * 6 5 4 8 8 H 1.08995 * 109.50325 * 62.27776 * 7 6 5 9 9 C 1.50694 * 109.53859 * 182.38527 * 7 6 5 10 10 H 1.07995 * 120.00567 * 115.70332 * 9 7 6 11 11 C 1.37882 * 119.99700 * 295.69942 * 9 7 6 12 12 N 1.31512 * 120.00092 * 179.97438 * 11 9 7 13 13 Si 1.86799 * 119.99996 * 0.02562 * 11 9 7 14 14 H 1.48502 * 109.47024 * 89.99801 * 13 11 9 15 15 H 1.48503 * 109.47096 * 209.99486 * 13 11 9 16 16 H 1.48503 * 109.47125 * 329.99791 * 13 11 9 17 17 C 1.46843 * 110.99989 * 174.69003 * 3 2 1 18 18 H 1.09006 * 109.46213 * 294.17708 * 17 3 2 19 19 C 1.53007 * 109.45488 * 54.14745 * 17 3 2 20 20 C 1.52997 * 109.47022 * 66.56962 * 19 17 3 21 21 C 1.53000 * 109.47171 * 186.56798 * 19 17 3 22 22 H 1.09005 * 109.46693 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47233 * 300.00031 * 1 2 3 24 24 H 1.08994 * 109.47013 * 60.00512 * 1 2 3 25 25 H 1.08995 * 109.47233 * 239.99969 * 2 1 3 26 26 H 1.09003 * 109.46943 * 119.99241 * 2 1 3 27 27 H 1.08995 * 109.46344 * 65.82517 * 4 3 2 28 28 H 1.09002 * 109.46226 * 305.85696 * 4 3 2 29 29 H 1.09003 * 109.50366 * 180.88183 * 5 4 3 30 30 H 1.08998 * 109.50703 * 60.75701 * 5 4 3 31 31 H 1.08996 * 109.52366 * 297.74974 * 6 5 4 32 32 H 1.09006 * 109.57178 * 177.59126 * 6 5 4 33 33 H 0.97004 * 120.00328 * 180.02562 * 12 11 9 34 34 H 1.09000 * 109.46681 * 306.57090 * 19 17 3 35 35 H 1.09003 * 109.47091 * 56.63667 * 20 19 17 36 36 H 1.08992 * 109.47136 * 176.64494 * 20 19 17 37 37 H 1.09000 * 109.46880 * 296.64234 * 20 19 17 38 38 H 1.09005 * 109.46897 * 40.18846 * 21 19 17 39 39 H 1.08998 * 109.46809 * 160.18325 * 21 19 17 40 40 H 1.08995 * 109.46946 * 280.18908 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.3725 2.1720 1.0575 5 6 1.7953 3.6377 0.9357 6 6 3.3183 3.7364 1.0596 7 6 3.9679 2.8697 -0.0227 8 1 3.6897 3.2472 -1.0067 9 6 5.4666 2.9142 0.1281 10 1 6.0112 2.0158 0.3781 11 6 6.1427 4.1022 -0.0531 12 7 7.4506 4.1412 0.0790 13 14 5.2008 5.6565 -0.4848 14 1 4.8060 6.3587 0.7627 15 1 6.0634 6.5470 -1.3023 16 1 3.9843 5.2994 -1.2581 17 6 3.4820 1.4263 0.1269 18 1 3.7725 1.0448 1.1058 19 6 4.1129 0.5602 -0.9654 20 6 3.8414 1.1878 -2.3341 21 6 5.6229 0.4701 -0.7362 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 1.6729 1.7872 2.0320 28 1 0.2899 2.0966 0.9554 29 1 1.3272 4.2188 1.7303 30 1 1.4831 4.0273 -0.0333 31 1 3.6274 3.3832 2.0434 32 1 3.6288 4.7734 0.9309 33 1 7.9263 4.9770 -0.0481 34 1 3.6799 -0.4395 -0.9317 35 1 4.2218 2.2092 -2.3474 36 1 4.3409 0.6038 -3.1070 37 1 2.7679 1.1975 -2.5229 38 1 5.8229 0.3646 0.3302 39 1 6.0201 -0.3947 -1.2676 40 1 6.1015 1.3762 -1.1077 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709988870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:05 Heat of formation + Delta-G solvation = -10.704206 kcal Electronic energy + Delta-G solvation = -17404.460351 eV Core-core repulsion = 15025.571548 eV Total energy + Delta-G solvation = -2378.888803 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.80576 -36.47998 -35.56149 -33.95726 -30.78703 -30.50498 -28.25926 -26.81658 -25.27457 -23.68288 -21.78781 -21.35466 -19.77304 -18.61904 -17.02267 -16.30824 -16.04184 -15.68574 -15.56558 -15.28580 -14.48242 -14.33631 -14.14914 -13.72895 -13.44452 -13.24498 -12.96272 -12.81686 -12.56762 -12.43690 -12.22932 -12.02269 -11.89334 -11.76675 -11.66209 -11.48661 -11.29076 -11.08881 -10.68415 -10.60769 -10.07727 -9.05637 -8.14278 -6.11427 1.31233 1.37782 1.46532 2.41050 3.09640 3.18675 3.96575 4.08177 4.11971 4.22131 4.35988 4.41154 4.45236 4.53336 4.68311 4.72317 4.76751 4.80057 4.93887 4.97828 5.00308 5.02628 5.10746 5.18707 5.21131 5.26762 5.30547 5.33713 5.38219 5.42076 5.57610 5.67700 5.76725 5.81357 5.96188 6.31562 6.42750 6.55829 6.94109 7.48858 8.98731 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028776 B = 0.011795 C = 0.009445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.791254 B = 2373.327178 C = 2963.905338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.045 3.955 3 N -0.540 5.540 4 C 0.058 3.942 5 C -0.115 4.115 6 C -0.127 4.127 7 C 0.023 3.977 8 H 0.032 0.968 9 C -0.505 4.505 10 H 0.082 0.918 11 C 0.016 3.984 12 N -0.951 5.951 13 Si 0.924 3.076 14 H -0.278 1.278 15 H -0.305 1.305 16 H -0.251 1.251 17 C 0.115 3.885 18 H 0.010 0.990 19 C -0.071 4.071 20 C -0.128 4.128 21 C -0.136 4.136 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.022 0.978 27 H 0.021 0.979 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.030 0.970 33 H 0.259 0.741 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.043 0.957 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.252 -6.652 -0.798 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 N -0.265 5.265 4 C -0.069 4.069 5 C -0.153 4.153 6 C -0.164 4.164 7 C 0.004 3.996 8 H 0.050 0.950 9 C -0.543 4.543 10 H 0.100 0.900 11 C -0.180 4.180 12 N -0.593 5.593 13 Si 0.753 3.247 14 H -0.204 1.204 15 H -0.233 1.233 16 H -0.175 1.175 17 C 0.007 3.993 18 H 0.028 0.972 19 C -0.090 4.090 20 C -0.185 4.185 21 C -0.194 4.194 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.260 -6.344 -1.254 15.658 hybrid contribution 0.733 0.837 0.867 1.410 sum -13.527 -5.507 -0.387 14.610 Atomic orbital electron populations 1.21855 0.93469 1.02520 1.02392 1.22192 0.96779 0.88799 1.00448 1.62014 1.05261 1.12211 1.47034 1.22141 0.99889 0.92960 0.91922 1.21633 0.94969 0.96764 1.01907 1.21965 0.95739 0.98753 0.99988 1.19210 0.93469 0.92205 0.94727 0.95023 1.22063 0.91840 0.96567 1.43831 0.89989 1.25605 0.95126 1.01280 0.95976 1.70014 1.08481 1.27282 1.53530 0.86185 0.79309 0.80961 0.78220 1.20446 1.23317 1.17473 1.21424 0.85984 0.96379 0.95473 0.97226 1.20968 0.94958 0.97762 0.95280 1.21674 1.01193 1.00122 0.95500 1.22203 0.96484 1.01211 0.99454 0.90846 0.92223 0.91996 0.90293 0.96021 0.96029 0.88234 0.90561 0.92060 0.93899 0.95112 0.93222 0.90976 0.94256 0.93014 0.91958 0.94963 0.93768 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.36 71.98 0.67 -2.17 16 2 C 0.05 1.17 5.16 86.30 0.44 1.61 16 3 N -0.54 -17.33 4.19 -871.08 -3.65 -20.98 16 4 C 0.06 1.73 5.00 86.33 0.43 2.16 16 5 C -0.11 -3.81 6.09 30.65 0.19 -3.62 16 6 C -0.13 -5.38 4.83 30.67 0.15 -5.23 16 7 C 0.02 1.04 0.86 -11.49 -0.01 1.03 16 8 H 0.03 1.52 4.97 -2.39 -0.01 1.51 16 9 C -0.50 -27.23 6.72 25.60 0.17 -27.06 16 10 H 0.08 4.70 4.27 -2.91 -0.01 4.69 16 11 C 0.02 0.91 5.45 84.66 0.46 1.37 16 12 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 13 Si 0.92 45.74 24.58 68.60 1.69 47.42 16 14 H -0.28 -13.42 6.89 99.48 0.69 -12.74 16 15 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 16 H -0.25 -11.74 6.42 99.48 0.64 -11.10 16 17 C 0.12 4.49 1.27 44.94 0.06 4.55 16 18 H 0.01 0.42 8.00 -2.38 -0.02 0.40 16 19 C -0.07 -2.57 2.35 -10.79 -0.03 -2.60 16 20 C -0.13 -4.50 8.54 71.98 0.61 -3.88 16 21 C -0.14 -5.55 7.48 71.98 0.54 -5.01 16 22 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 23 H 0.06 1.11 6.19 -2.39 -0.01 1.10 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 1.99 6.40 -2.39 -0.02 1.98 16 26 H 0.02 0.58 8.13 -2.39 -0.02 0.56 16 27 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.10 2.38 5.83 -2.39 -0.01 2.36 16 29 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 32 H 0.03 1.38 3.89 -2.38 -0.01 1.37 16 33 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 34 H 0.07 2.27 6.07 -2.39 -0.01 2.25 16 35 H 0.04 1.62 6.09 -2.39 -0.01 1.60 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 2.01 7.89 -2.39 -0.02 1.99 16 38 H 0.03 1.38 6.82 -2.38 -0.02 1.36 16 39 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 3.23 5.52 -2.39 -0.01 3.21 16 Total: -1.00 -61.23 279.78 2.94 -58.28 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.91 Total: 12.68 kcal Atomic # 6 Polarization: -42.54 SS G_CDS: 3.69 Total: -38.84 kcal Atomic # 7 Polarization: -76.19 SS G_CDS: -3.35 Total: -79.55 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.69 Total: 47.42 kcal Total: -61.23 2.94 -58.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709988870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.580 kcal (2) G-P(sol) polarization free energy of solvation -61.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds