Wall clock time and date at job start Mon Mar 30 2020 02:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46602 * 2 1 4 4 C 1.53001 * 109.47120 * 119.99498 * 2 1 3 5 5 C 1.50697 * 109.47069 * 185.00145 * 4 2 1 6 6 H 1.07997 * 119.99767 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00173 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00197 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46788 * 60.00205 * 9 7 5 11 11 H 1.48497 * 109.46777 * 180.02562 * 9 7 5 12 12 H 1.48490 * 109.47036 * 300.00063 * 9 7 5 13 13 N 1.46891 * 109.47055 * 240.00043 * 2 1 3 14 14 C 1.46895 * 111.00390 * 84.99656 * 13 2 1 15 15 C 1.53006 * 109.47374 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.47127 * 295.00371 * 15 14 13 17 17 C 1.52996 * 109.47131 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47518 * 59.99828 * 17 16 15 19 19 C 1.53005 * 109.46632 * 300.00318 * 18 17 16 20 20 C 1.52996 * 109.47245 * 59.99973 * 19 18 17 21 21 H 1.09001 * 109.47091 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47232 * 300.00052 * 1 2 3 23 23 H 1.08995 * 109.47185 * 60.00529 * 1 2 3 24 24 H 1.09002 * 109.47323 * 305.00602 * 4 2 1 25 25 H 1.09003 * 109.46854 * 65.00123 * 4 2 1 26 26 H 0.97003 * 120.00198 * 179.97438 * 8 7 5 27 27 H 1.00909 * 111.00129 * 321.03836 * 13 2 1 28 28 H 1.09007 * 109.46922 * 60.00109 * 14 13 2 29 29 H 1.08995 * 109.47222 * 299.99492 * 14 13 2 30 30 H 1.09001 * 109.47002 * 54.99945 * 15 14 13 31 31 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 32 32 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 33 33 H 1.09001 * 109.46997 * 299.99574 * 17 16 15 34 34 H 1.08996 * 109.47134 * 180.02562 * 17 16 15 35 35 H 1.08992 * 109.47132 * 180.02562 * 18 17 16 36 36 H 1.08992 * 109.46645 * 59.99985 * 18 17 16 37 37 H 1.09001 * 109.46962 * 299.99689 * 19 18 17 38 38 H 1.08996 * 109.46524 * 179.97438 * 19 18 17 39 39 H 1.09000 * 109.46870 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47372 * 59.99967 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2304 -1.1923 2.3584 8 7 3.5764 -1.8366 3.3002 9 14 6.0921 -1.0611 2.4367 10 1 6.4854 0.3697 2.4951 11 1 6.5870 -1.7609 3.6493 12 1 6.6838 -1.6882 1.2277 13 7 2.0197 -0.6924 -1.1994 14 6 2.0824 0.2225 -2.3469 15 6 2.5962 -0.5330 -3.5742 16 6 4.0398 -0.9779 -3.3318 17 6 4.5538 -1.7328 -4.5593 18 6 4.5017 -0.8143 -5.7818 19 6 3.0579 -0.3694 -6.0241 20 6 2.5440 0.3856 -4.7966 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 1.6054 -0.2616 2.1370 25 1 1.7517 -1.7714 1.2057 26 1 4.0608 -2.2433 4.0357 27 1 1.4496 -1.4980 -1.4099 28 1 2.7588 1.0462 -2.1182 29 1 1.0870 0.6161 -2.5526 30 1 1.9710 -1.4084 -3.7500 31 1 4.6651 -0.1025 -3.1559 32 1 4.0771 -1.6319 -2.4605 33 1 3.9287 -2.6081 -4.7355 34 1 5.5821 -2.0501 -4.3864 35 1 4.8674 -1.3523 -6.6563 36 1 5.1268 0.0610 -5.6054 37 1 2.4327 -1.2448 -6.2003 38 1 3.0208 0.2853 -6.8947 39 1 1.5156 0.7028 -4.9695 40 1 3.1692 1.2609 -4.6204 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709994576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:08 Heat of formation + Delta-G solvation = -43.923663 kcal Electronic energy + Delta-G solvation = -16089.763609 eV Core-core repulsion = 13709.434302 eV Total energy + Delta-G solvation = -2380.329307 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.67380 -36.36093 -32.96984 -31.77683 -30.57023 -28.85390 -27.17505 -24.36054 -22.83421 -22.34196 -20.79569 -19.91137 -19.20792 -16.14840 -15.34529 -14.81287 -14.53773 -14.39014 -14.07193 -13.77383 -13.70171 -12.88502 -12.43484 -12.09199 -11.97772 -11.84002 -11.68669 -11.51082 -11.35727 -10.98689 -10.89122 -10.73061 -10.55951 -10.44212 -10.19946 -9.99606 -9.85067 -9.77963 -9.17177 -8.91987 -8.19739 -7.44284 -5.82286 -3.79410 3.44207 3.47751 3.51404 4.61245 4.70057 4.81944 4.91486 5.08344 5.30397 5.44832 5.54742 5.56884 5.67096 5.68499 5.70128 5.76111 5.81020 5.93870 5.96895 6.05664 6.09779 6.11791 6.15096 6.28449 6.33429 6.38473 6.46709 6.56778 6.68945 6.74919 6.86901 7.10195 7.64775 7.76551 8.11140 8.13904 8.26506 8.67093 9.25741 9.81405 11.29938 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.007268 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.568712 B = 3851.539444 C = 4789.060325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 H 0.062 0.938 4 C 0.033 3.967 5 C -0.485 4.485 6 H 0.057 0.943 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.662 5.662 14 C 0.064 3.936 15 C -0.081 4.081 16 C -0.107 4.107 17 C -0.121 4.121 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.114 4.114 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.036 0.964 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.257 0.743 27 H 0.329 0.671 28 H 0.066 0.934 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.472 2.748 -16.227 16.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.021 4.021 3 H 0.080 0.920 4 C -0.004 4.004 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.291 5.291 14 C -0.066 4.066 15 C -0.100 4.100 16 C -0.145 4.145 17 C -0.159 4.159 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.152 4.152 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.146 0.854 28 H 0.084 0.916 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.766 2.741 -15.892 16.223 hybrid contribution 0.046 0.127 -0.085 0.160 sum -1.720 2.868 -15.977 16.323 Atomic orbital electron populations 1.22553 0.99726 1.01084 1.00469 1.21778 0.89733 0.98098 0.92450 0.91972 1.19105 0.96187 0.95348 0.89756 1.21108 0.91922 1.32691 1.06646 0.92439 1.25003 0.97873 0.96023 0.96090 1.69959 1.35196 1.37116 1.12401 0.86716 0.86592 0.77895 0.77072 1.20623 1.21685 1.20378 1.60517 1.57496 1.08536 1.02568 1.22001 0.97902 0.95906 0.90743 1.21124 0.97525 0.97812 0.93521 1.21482 0.94711 1.00558 0.97716 1.21574 1.00821 0.98240 0.95223 1.21542 0.96608 0.99569 0.97942 1.21501 0.96588 0.99839 0.97462 1.21563 1.00483 0.98483 0.94668 0.93113 0.92618 0.94511 0.96637 0.96572 0.93362 0.85416 0.91593 0.96729 0.91843 0.92517 0.89804 0.92423 0.92394 0.92739 0.92238 0.92296 0.92614 0.92579 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 9.16 37.16 0.34 -2.75 16 2 C 0.09 1.82 2.53 -67.71 -0.17 1.65 16 3 H 0.06 1.32 7.80 -51.93 -0.40 0.91 16 4 C 0.03 0.86 4.65 -27.88 -0.13 0.73 16 5 C -0.49 -13.83 8.84 -34.44 -0.30 -14.14 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.81 13.29 55.43 0.74 -27.08 16 9 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.66 -12.35 5.42 -106.73 -0.58 -12.93 16 14 C 0.06 1.00 4.87 -3.82 -0.02 0.98 16 15 C -0.08 -1.09 2.33 -90.62 -0.21 -1.31 16 16 C -0.11 -1.57 5.09 -26.73 -0.14 -1.71 16 17 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 18 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 19 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 20 C -0.11 -1.31 5.20 -26.73 -0.14 -1.45 16 21 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.33 5.80 8.47 -39.29 -0.33 5.46 16 28 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 29 H 0.01 0.22 7.44 -51.93 -0.39 -0.17 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.47 7.75 -51.93 -0.40 1.06 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 312.47 15.07 4.71 4.71 Total: -1.00 -29.67 312.47 -9.29 -38.96 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.79 Total: 0.02 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -1.34 Total: -21.09 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.16 Total: -40.01 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.67 -9.29 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709994576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.964 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds