Wall clock time and date at job start Mon Mar 30 2020 02:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46602 * 2 1 4 4 C 1.53001 * 109.47120 * 119.99498 * 2 1 3 5 5 C 1.50697 * 109.47069 * 185.00145 * 4 2 1 6 6 H 1.07997 * 119.99767 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00173 * 179.97438 * 5 4 2 8 8 N 1.31521 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00197 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46788 * 60.00205 * 9 7 5 11 11 H 1.48497 * 109.46777 * 180.02562 * 9 7 5 12 12 H 1.48490 * 109.47036 * 300.00063 * 9 7 5 13 13 N 1.46891 * 109.47055 * 240.00043 * 2 1 3 14 14 C 1.46895 * 111.00390 * 84.99656 * 13 2 1 15 15 C 1.53006 * 109.47374 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.47127 * 295.00371 * 15 14 13 17 17 C 1.52996 * 109.47131 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.47518 * 59.99828 * 17 16 15 19 19 C 1.53005 * 109.46632 * 300.00318 * 18 17 16 20 20 C 1.52996 * 109.47245 * 59.99973 * 19 18 17 21 21 H 1.09001 * 109.47091 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47232 * 300.00052 * 1 2 3 23 23 H 1.08995 * 109.47185 * 60.00529 * 1 2 3 24 24 H 1.09002 * 109.47323 * 305.00602 * 4 2 1 25 25 H 1.09003 * 109.46854 * 65.00123 * 4 2 1 26 26 H 0.97003 * 120.00198 * 179.97438 * 8 7 5 27 27 H 1.00909 * 111.00129 * 321.03836 * 13 2 1 28 28 H 1.09007 * 109.46922 * 60.00109 * 14 13 2 29 29 H 1.08995 * 109.47222 * 299.99492 * 14 13 2 30 30 H 1.09001 * 109.47002 * 54.99945 * 15 14 13 31 31 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 32 32 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 33 33 H 1.09001 * 109.46997 * 299.99574 * 17 16 15 34 34 H 1.08996 * 109.47134 * 180.02562 * 17 16 15 35 35 H 1.08992 * 109.47132 * 180.02562 * 18 17 16 36 36 H 1.08992 * 109.46645 * 59.99985 * 18 17 16 37 37 H 1.09001 * 109.46962 * 299.99689 * 19 18 17 38 38 H 1.08996 * 109.46524 * 179.97438 * 19 18 17 39 39 H 1.09000 * 109.46870 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47372 * 59.99967 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2304 -1.1923 2.3584 8 7 3.5764 -1.8366 3.3002 9 14 6.0921 -1.0611 2.4367 10 1 6.4854 0.3697 2.4951 11 1 6.5870 -1.7609 3.6493 12 1 6.6838 -1.6882 1.2277 13 7 2.0197 -0.6924 -1.1994 14 6 2.0824 0.2225 -2.3469 15 6 2.5962 -0.5330 -3.5742 16 6 4.0398 -0.9779 -3.3318 17 6 4.5538 -1.7328 -4.5593 18 6 4.5017 -0.8143 -5.7818 19 6 3.0579 -0.3694 -6.0241 20 6 2.5440 0.3856 -4.7966 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 1.6054 -0.2616 2.1370 25 1 1.7517 -1.7714 1.2057 26 1 4.0608 -2.2433 4.0357 27 1 1.4496 -1.4980 -1.4099 28 1 2.7588 1.0462 -2.1182 29 1 1.0870 0.6161 -2.5526 30 1 1.9710 -1.4084 -3.7500 31 1 4.6651 -0.1025 -3.1559 32 1 4.0771 -1.6319 -2.4605 33 1 3.9287 -2.6081 -4.7355 34 1 5.5821 -2.0501 -4.3864 35 1 4.8674 -1.3523 -6.6563 36 1 5.1268 0.0610 -5.6054 37 1 2.4327 -1.2448 -6.2003 38 1 3.0208 0.2853 -6.8947 39 1 1.5156 0.7028 -4.9695 40 1 3.1692 1.2609 -4.6204 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709994576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:08 Heat of formation + Delta-G solvation = -60.739592 kcal Electronic energy + Delta-G solvation = -16090.492802 eV Core-core repulsion = 13709.434302 eV Total energy + Delta-G solvation = -2381.058500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.76992 -37.85958 -34.89768 -33.31233 -31.54586 -30.32594 -29.01937 -25.71050 -24.75424 -23.33427 -21.92533 -21.40279 -20.41231 -18.36107 -16.66715 -16.31015 -16.25804 -15.61636 -15.33731 -14.87583 -14.81308 -14.46945 -14.07100 -13.63267 -13.29478 -13.21913 -13.08340 -12.95257 -12.67239 -12.60145 -12.43410 -12.26797 -11.93271 -11.86531 -11.73440 -11.30461 -11.19383 -11.10462 -10.82557 -10.72782 -10.47082 -8.91773 -8.08592 -6.13052 1.40453 1.43637 1.50979 2.47675 3.23238 3.44950 3.81897 3.96502 4.02694 4.23215 4.31262 4.42975 4.45992 4.57508 4.60601 4.62645 4.70972 4.72674 4.84224 4.86844 4.93603 5.02362 5.10492 5.23140 5.25193 5.29660 5.33216 5.34889 5.39660 5.50529 5.52167 5.63694 5.68507 5.72713 5.91433 6.36811 6.54345 6.78935 7.00722 7.52152 9.03460 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.007268 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.568712 B = 3851.539444 C = 4789.060325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 H 0.054 0.946 4 C 0.038 3.962 5 C -0.496 4.496 6 H 0.054 0.946 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.679 5.679 14 C 0.069 3.931 15 C -0.074 4.074 16 C -0.106 4.106 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.110 4.110 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.064 0.936 24 H -0.010 1.010 25 H -0.010 1.010 26 H 0.258 0.742 27 H 0.334 0.666 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.370 3.348 -18.428 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 H 0.073 0.927 4 C 0.001 3.999 5 C -0.534 4.534 6 H 0.072 0.928 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.781 3.219 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.309 5.309 14 C -0.060 4.060 15 C -0.093 4.093 16 C -0.143 4.143 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.148 4.148 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.067 0.933 27 H 0.152 0.848 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.668 3.351 -18.112 18.495 hybrid contribution 0.006 -0.070 0.614 0.618 sum -1.662 3.281 -17.498 17.880 Atomic orbital electron populations 1.22400 0.96829 1.01696 1.01793 1.21439 0.91997 0.96683 0.91007 0.92730 1.18994 0.95099 0.94144 0.91705 1.21431 0.93400 1.32222 1.06383 0.92759 1.25856 1.02836 0.95757 0.95804 1.70091 1.37095 1.38112 1.13067 0.85656 0.80720 0.78324 0.77229 1.19579 1.21160 1.19775 1.60348 1.57981 1.09427 1.03152 1.22004 0.98574 0.95155 0.90284 1.21075 0.96397 0.98232 0.93605 1.21411 0.95754 0.99586 0.97588 1.21545 1.00586 0.98496 0.94976 1.21531 0.97222 0.99201 0.97461 1.21498 0.96015 1.00222 0.97367 1.21532 1.01377 0.97904 0.93961 0.92872 0.92678 0.91740 0.99179 0.99169 0.93308 0.84781 0.93001 0.94982 0.91439 0.93717 0.93346 0.92050 0.92645 0.91116 0.92445 0.91813 0.90815 0.91295 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.58 9.16 71.98 0.66 -4.92 16 2 C 0.10 4.05 2.53 44.92 0.11 4.17 16 3 H 0.05 2.31 7.80 -2.39 -0.02 2.29 16 4 C 0.04 2.03 4.65 29.85 0.14 2.17 16 5 C -0.50 -28.91 8.84 25.60 0.23 -28.68 16 6 H 0.05 3.13 7.74 -2.91 -0.02 3.11 16 7 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 8 N -0.94 -59.05 13.29 21.45 0.28 -58.77 16 9 Si 0.95 46.50 29.54 68.60 2.03 48.52 16 10 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 13 N -0.68 -25.25 5.42 -491.58 -2.66 -27.91 16 14 C 0.07 2.07 4.87 86.31 0.42 2.49 16 15 C -0.07 -1.90 2.33 -10.79 -0.03 -1.93 16 16 C -0.11 -3.08 5.09 30.59 0.16 -2.92 16 17 C -0.12 -2.78 5.92 30.59 0.18 -2.60 16 18 C -0.12 -2.21 5.92 30.60 0.18 -2.03 16 19 C -0.11 -1.97 5.92 30.59 0.18 -1.79 16 20 C -0.11 -2.22 5.20 30.59 0.16 -2.06 16 21 H 0.05 1.73 8.13 -2.39 -0.02 1.71 16 22 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.06 1.79 7.45 -2.39 -0.02 1.77 16 24 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 27 H 0.33 11.67 8.47 -89.69 -0.76 10.91 16 28 H 0.05 1.70 8.06 -2.38 -0.02 1.68 16 29 H 0.03 0.87 7.44 -2.39 -0.02 0.85 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.73 7.75 -2.38 -0.02 1.71 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -64.36 312.47 2.71 -61.65 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.20 Total: 14.55 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 2.85 Total: -38.05 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -2.38 Total: -86.68 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -64.36 2.71 -61.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709994576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.915 kcal (2) G-P(sol) polarization free energy of solvation -64.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds