Wall clock time and date at job start Mon Mar 30 2020 02:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47195 * 2 1 4 4 C 1.53004 * 109.47063 * 120.00097 * 2 1 3 5 5 H 1.08997 * 110.72538 * 61.18107 * 4 2 1 6 6 C 1.54937 * 110.66207 * 298.08577 * 4 2 1 7 7 C 1.54607 * 102.91721 * 204.15150 * 6 4 2 8 8 C 1.53998 * 105.13904 * 21.95789 * 7 6 4 9 9 N 1.47902 * 107.05651 * 1.22797 * 8 7 6 10 10 C 1.46904 * 110.99490 * 214.15656 * 9 8 7 11 11 H 1.08996 * 109.47357 * 321.36053 * 10 9 8 12 12 C 1.52997 * 109.47295 * 81.36070 * 10 9 8 13 13 C 1.53000 * 109.46744 * 201.36069 * 10 9 8 14 14 C 1.50694 * 109.47294 * 61.03165 * 13 10 9 15 15 H 1.08006 * 119.99836 * 4.52595 * 14 13 10 16 16 C 1.37877 * 120.00266 * 184.53013 * 14 13 10 17 17 N 1.31512 * 119.99924 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47419 * 59.99951 * 18 16 14 20 20 H 1.48506 * 109.46883 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47136 * 299.99546 * 18 16 14 22 22 H 1.08993 * 109.47699 * 300.00306 * 1 2 3 23 23 H 1.09008 * 109.46794 * 59.99955 * 1 2 3 24 24 H 1.08997 * 109.47476 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47222 * 239.99889 * 2 1 3 26 26 H 1.09005 * 109.47241 * 173.02027 * 3 2 1 27 27 H 1.09002 * 109.47145 * 293.02049 * 3 2 1 28 28 H 1.09003 * 109.47069 * 53.01735 * 3 2 1 29 29 H 1.08995 * 110.72583 * 85.79517 * 6 4 2 30 30 H 1.08999 * 110.72842 * 322.50375 * 6 4 2 31 31 H 1.08996 * 110.30464 * 263.04327 * 7 6 4 32 32 H 1.08997 * 110.30534 * 140.87626 * 7 6 4 33 33 H 1.08995 * 109.91139 * 241.87095 * 8 7 6 34 34 H 1.09000 * 109.91289 * 120.57757 * 8 7 6 35 35 H 1.09004 * 109.47590 * 307.16262 * 12 10 9 36 36 H 1.09008 * 109.47372 * 67.16009 * 12 10 9 37 37 H 1.09003 * 109.47266 * 187.16379 * 12 10 9 38 38 H 1.09007 * 109.46937 * 181.02920 * 13 10 9 39 39 H 1.08995 * 109.47132 * 301.02591 * 13 10 9 40 40 H 0.96997 * 120.00473 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.7052 -1.7585 1.2595 6 6 1.5787 0.0149 2.5322 7 6 2.6329 -0.4180 3.5770 8 6 3.8591 -0.8546 2.7540 9 7 3.5213 -0.6476 1.3291 10 6 4.1457 -1.6754 0.4854 11 1 5.1460 -1.8939 0.8592 12 6 3.2984 -2.9488 0.5216 13 6 4.2392 -1.1657 -0.9542 14 6 5.0947 0.0742 -0.9936 15 1 5.5879 0.4187 -0.0966 16 6 5.2477 0.7690 -2.1746 17 7 4.6475 0.3493 -3.2669 18 14 6.3076 2.3065 -2.2231 19 1 7.6967 1.9629 -1.8265 20 1 6.3097 2.8629 -3.6000 21 1 5.7593 3.3156 -1.2818 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1228 1.4450 0.1249 27 1 1.7822 1.9190 -0.9458 28 1 1.5782 1.9911 0.8209 29 1 0.5832 -0.3148 2.8293 30 1 1.6011 1.0948 2.3864 31 1 2.2579 -1.2528 4.1691 32 1 2.8904 0.4203 4.2242 33 1 4.0724 -1.9078 2.9360 34 1 4.7225 -0.2461 3.0231 35 1 3.1253 -3.2408 1.5574 36 1 2.3423 -2.7632 0.0319 37 1 3.8237 -3.7497 0.0013 38 1 4.6858 -1.9354 -1.5838 39 1 3.2405 -0.9300 -1.3218 40 1 4.7554 0.8379 -4.0979 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709998322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:15 Heat of formation + Delta-G solvation = -5.023357 kcal Electronic energy + Delta-G solvation = -17273.726315 eV Core-core repulsion = 14895.083852 eV Total energy + Delta-G solvation = -2378.642463 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.40658 -34.41948 -33.86120 -32.05328 -28.46127 -27.57168 -27.15142 -26.17835 -23.33200 -22.42983 -20.53833 -19.39421 -17.85006 -16.12553 -15.81990 -15.09335 -14.42736 -14.00135 -13.81137 -13.20408 -12.97895 -12.58529 -12.27511 -12.01470 -11.70205 -11.54855 -11.36630 -11.24707 -10.91118 -10.88682 -10.76692 -10.56930 -10.52973 -10.33388 -10.16996 -9.81396 -9.74817 -9.37869 -9.08001 -8.78186 -8.11678 -7.39393 -5.81120 -3.76373 3.44457 3.48387 3.52064 4.61348 4.66131 5.09967 5.15954 5.35654 5.54970 5.60983 5.71566 5.80554 5.85736 5.89807 5.91029 5.94719 6.06593 6.10893 6.17974 6.21239 6.33436 6.41032 6.47398 6.49581 6.55656 6.61065 6.66517 6.86282 7.00733 7.04785 7.19628 7.59045 7.67700 7.76503 7.99976 8.13234 8.21301 8.67844 9.27143 9.82970 11.30902 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025709 B = 0.010175 C = 0.009610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.862011 B = 2751.170122 C = 2912.833664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.134 4.134 4 C 0.067 3.933 5 H 0.053 0.947 6 C -0.122 4.122 7 C -0.129 4.129 8 C 0.033 3.967 9 N -0.479 5.479 10 C 0.076 3.924 11 H 0.062 0.938 12 C -0.180 4.180 13 C 0.026 3.974 14 C -0.478 4.478 15 H 0.056 0.944 16 C 0.054 3.946 17 N -0.903 5.903 18 Si 0.882 3.118 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.278 1.278 22 H 0.047 0.953 23 H 0.050 0.950 24 H 0.043 0.957 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.036 0.964 28 H 0.029 0.971 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.009 0.991 39 H 0.037 0.963 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.551 -2.384 10.104 12.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.191 4.191 4 C -0.041 4.041 5 H 0.070 0.930 6 C -0.160 4.160 7 C -0.168 4.168 8 C -0.095 4.095 9 N -0.202 5.202 10 C -0.032 4.032 11 H 0.080 0.920 12 C -0.238 4.238 13 C -0.011 4.011 14 C -0.517 4.517 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.544 5.544 18 Si 0.711 3.289 19 H -0.207 1.207 20 H -0.218 1.218 21 H -0.204 1.204 22 H 0.066 0.934 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.109 0.891 26 H 0.113 0.887 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.027 0.973 39 H 0.055 0.945 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.350 -1.836 9.735 11.767 hybrid contribution 0.330 0.015 0.187 0.379 sum -6.020 -1.821 9.921 11.747 Atomic orbital electron populations 1.21879 0.96984 1.00443 1.00971 1.21167 0.92942 0.98101 0.98176 1.21735 1.04738 0.94023 0.98565 1.22877 0.89108 0.97412 0.94725 0.92973 1.22605 0.97077 1.01622 0.94725 1.22371 0.96183 1.00328 0.97879 1.22835 0.97824 0.98633 0.90211 1.64934 1.05590 1.46177 1.03482 1.22050 0.95540 0.87499 0.98118 0.91994 1.22497 1.01570 0.99989 0.99781 1.19363 0.98327 0.95762 0.87635 1.21007 1.27450 1.08923 0.94313 0.92597 1.24923 0.96263 0.97378 0.95981 1.69939 1.44465 1.40116 0.99892 0.86812 0.81116 0.84332 0.76598 1.20722 1.21792 1.20363 0.93426 0.93085 0.93801 0.89060 0.88699 0.94485 0.95154 0.92309 0.90416 0.92579 0.91801 0.94865 0.91126 0.94335 0.92354 0.92882 0.97251 0.94538 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.99 37.15 0.33 -1.85 16 2 C -0.09 -1.57 2.45 -90.62 -0.22 -1.79 16 3 C -0.13 -2.63 8.63 37.16 0.32 -2.31 16 4 C 0.07 1.14 1.55 -65.78 -0.10 1.04 16 5 H 0.05 0.88 5.25 -51.93 -0.27 0.61 16 6 C -0.12 -1.79 5.36 -24.86 -0.13 -1.92 16 7 C -0.13 -1.77 6.93 -25.37 -0.18 -1.95 16 8 C 0.03 0.54 6.38 -2.75 -0.02 0.52 16 9 N -0.48 -9.08 3.52 -214.72 -0.76 -9.84 16 10 C 0.08 1.56 2.15 -67.71 -0.15 1.41 16 11 H 0.06 1.30 7.92 -51.93 -0.41 0.88 16 12 C -0.18 -3.13 7.75 37.16 0.29 -2.84 16 13 C 0.03 0.64 4.36 -27.89 -0.12 0.52 16 14 C -0.48 -13.07 7.65 -34.44 -0.26 -13.33 16 15 H 0.06 1.55 7.75 -52.48 -0.41 1.14 16 16 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 17 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 18 Si 0.88 22.02 29.54 -169.99 -5.02 17.00 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H 0.05 0.65 7.25 -51.93 -0.38 0.27 16 23 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 1.98 5.03 -51.93 -0.26 1.71 16 26 H 0.09 2.18 6.20 -51.93 -0.32 1.86 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.03 0.52 6.45 -51.93 -0.34 0.19 16 29 H 0.06 0.76 8.02 -51.93 -0.42 0.34 16 30 H 0.08 1.19 5.94 -51.93 -0.31 0.88 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.51 6.97 -51.93 -0.36 0.15 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.04 0.60 7.07 -51.93 -0.37 0.23 16 36 H 0.06 1.02 6.61 -51.92 -0.34 0.68 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.04 0.96 4.67 -51.93 -0.24 0.71 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 293.87 15.07 4.43 4.43 Total: -1.00 -28.39 293.87 -7.89 -36.28 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.94 Total: -0.74 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -0.34 Total: -21.08 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.02 Total: -35.89 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.39 -7.89 -36.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709998322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.259 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds