Wall clock time and date at job start Mon Mar 30 2020 02:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47195 * 2 1 4 4 C 1.53004 * 109.47063 * 120.00097 * 2 1 3 5 5 H 1.08997 * 110.72538 * 61.18107 * 4 2 1 6 6 C 1.54937 * 110.66207 * 298.08577 * 4 2 1 7 7 C 1.54607 * 102.91721 * 204.15150 * 6 4 2 8 8 C 1.53998 * 105.13904 * 21.95789 * 7 6 4 9 9 N 1.47902 * 107.05651 * 1.22797 * 8 7 6 10 10 C 1.46904 * 110.99490 * 214.15656 * 9 8 7 11 11 H 1.08996 * 109.47357 * 321.36053 * 10 9 8 12 12 C 1.52997 * 109.47295 * 81.36070 * 10 9 8 13 13 C 1.53000 * 109.46744 * 201.36069 * 10 9 8 14 14 C 1.50694 * 109.47294 * 61.03165 * 13 10 9 15 15 H 1.08006 * 119.99836 * 4.52595 * 14 13 10 16 16 C 1.37877 * 120.00266 * 184.53013 * 14 13 10 17 17 N 1.31512 * 119.99924 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00039 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47419 * 59.99951 * 18 16 14 20 20 H 1.48506 * 109.46883 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47136 * 299.99546 * 18 16 14 22 22 H 1.08993 * 109.47699 * 300.00306 * 1 2 3 23 23 H 1.09008 * 109.46794 * 59.99955 * 1 2 3 24 24 H 1.08997 * 109.47476 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47222 * 239.99889 * 2 1 3 26 26 H 1.09005 * 109.47241 * 173.02027 * 3 2 1 27 27 H 1.09002 * 109.47145 * 293.02049 * 3 2 1 28 28 H 1.09003 * 109.47069 * 53.01735 * 3 2 1 29 29 H 1.08995 * 110.72583 * 85.79517 * 6 4 2 30 30 H 1.08999 * 110.72842 * 322.50375 * 6 4 2 31 31 H 1.08996 * 110.30464 * 263.04327 * 7 6 4 32 32 H 1.08997 * 110.30534 * 140.87626 * 7 6 4 33 33 H 1.08995 * 109.91139 * 241.87095 * 8 7 6 34 34 H 1.09000 * 109.91289 * 120.57757 * 8 7 6 35 35 H 1.09004 * 109.47590 * 307.16262 * 12 10 9 36 36 H 1.09008 * 109.47372 * 67.16009 * 12 10 9 37 37 H 1.09003 * 109.47266 * 187.16379 * 12 10 9 38 38 H 1.09007 * 109.46937 * 181.02920 * 13 10 9 39 39 H 1.08995 * 109.47132 * 301.02591 * 13 10 9 40 40 H 0.96997 * 120.00473 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.7052 -1.7585 1.2595 6 6 1.5787 0.0149 2.5322 7 6 2.6329 -0.4180 3.5770 8 6 3.8591 -0.8546 2.7540 9 7 3.5213 -0.6476 1.3291 10 6 4.1457 -1.6754 0.4854 11 1 5.1460 -1.8939 0.8592 12 6 3.2984 -2.9488 0.5216 13 6 4.2392 -1.1657 -0.9542 14 6 5.0947 0.0742 -0.9936 15 1 5.5879 0.4187 -0.0966 16 6 5.2477 0.7690 -2.1746 17 7 4.6475 0.3493 -3.2669 18 14 6.3076 2.3065 -2.2231 19 1 7.6967 1.9629 -1.8265 20 1 6.3097 2.8629 -3.6000 21 1 5.7593 3.3156 -1.2818 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1228 1.4450 0.1249 27 1 1.7822 1.9190 -0.9458 28 1 1.5782 1.9911 0.8209 29 1 0.5832 -0.3148 2.8293 30 1 1.6011 1.0948 2.3864 31 1 2.2579 -1.2528 4.1691 32 1 2.8904 0.4203 4.2242 33 1 4.0724 -1.9078 2.9360 34 1 4.7225 -0.2461 3.0231 35 1 3.1253 -3.2408 1.5574 36 1 2.3423 -2.7632 0.0319 37 1 3.8237 -3.7497 0.0013 38 1 4.6858 -1.9354 -1.5838 39 1 3.2405 -0.9300 -1.3218 40 1 4.7554 0.8379 -4.0979 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709998322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:15 Heat of formation + Delta-G solvation = -20.862915 kcal Electronic energy + Delta-G solvation = -17274.413169 eV Core-core repulsion = 14895.083852 eV Total energy + Delta-G solvation = -2379.329318 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.79908 -36.01233 -35.38666 -33.96348 -30.00168 -29.24305 -28.48291 -27.65748 -25.21105 -23.92853 -21.81915 -20.96487 -19.27022 -18.27929 -17.21557 -16.49283 -16.40912 -15.48469 -15.17005 -14.61068 -14.48768 -14.19711 -13.73759 -13.55553 -13.43285 -13.08145 -12.88392 -12.73698 -12.57350 -12.48323 -12.31141 -12.12484 -12.04815 -11.88409 -11.64876 -11.38863 -11.14582 -11.04415 -10.96989 -10.67368 -10.22482 -8.81737 -8.01388 -6.01726 1.42060 1.43727 1.50520 2.51332 3.24720 3.38193 3.85287 3.93221 4.20350 4.25278 4.35482 4.42182 4.45434 4.54608 4.58912 4.67230 4.77264 4.79871 4.96797 4.97475 5.04223 5.08958 5.10307 5.18599 5.23163 5.27931 5.29510 5.42723 5.47098 5.50921 5.59424 5.66826 5.88388 5.96405 6.10210 6.43183 6.47010 6.64802 7.09239 7.60675 9.10410 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025709 B = 0.010175 C = 0.009610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.862011 B = 2751.170122 C = 2912.833664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.125 4.125 4 C 0.067 3.933 5 H 0.060 0.940 6 C -0.116 4.116 7 C -0.120 4.120 8 C 0.030 3.970 9 N -0.504 5.504 10 C 0.084 3.916 11 H 0.052 0.948 12 C -0.169 4.169 13 C 0.030 3.970 14 C -0.476 4.476 15 H 0.049 0.951 16 C 0.003 3.997 17 N -0.937 5.937 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.291 1.291 21 H -0.273 1.273 22 H 0.069 0.931 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.017 0.983 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.054 0.946 38 H -0.022 1.022 39 H 0.024 0.976 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.635 -2.320 12.471 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.183 4.183 4 C -0.041 4.041 5 H 0.078 0.922 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.098 4.098 9 N -0.228 5.228 10 C -0.025 4.025 11 H 0.070 0.930 12 C -0.227 4.227 13 C -0.006 4.006 14 C -0.515 4.515 15 H 0.067 0.933 16 C -0.193 4.193 17 N -0.580 5.580 18 Si 0.767 3.233 19 H -0.200 1.200 20 H -0.216 1.216 21 H -0.198 1.198 22 H 0.088 0.912 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.073 0.927 38 H -0.004 1.004 39 H 0.042 0.958 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.428 -1.772 12.122 14.327 hybrid contribution 0.684 -0.007 -0.554 0.880 sum -6.744 -1.779 11.568 13.508 Atomic orbital electron populations 1.21794 0.94150 1.01667 1.01860 1.21073 0.95309 0.96577 0.97345 1.21611 1.02537 0.95556 0.98547 1.22902 0.87942 0.98009 0.95281 0.92216 1.22580 0.98704 1.00789 0.93344 1.22345 0.94407 1.01643 0.97443 1.22883 0.98983 0.99172 0.88731 1.64776 1.06964 1.45960 1.05084 1.21727 0.96112 0.89200 0.95435 0.92987 1.22349 1.00684 0.98322 1.01354 1.19246 0.96782 0.94100 0.90518 1.21229 1.26997 1.09457 0.93809 0.93253 1.25628 0.97607 1.00232 0.95801 1.70066 1.46091 1.41466 1.00338 0.85882 0.79761 0.81080 0.76561 1.19976 1.21645 1.19843 0.91219 0.93503 0.92423 0.93272 0.92283 0.96337 0.92520 0.89618 0.91211 0.90234 0.90587 0.94011 0.91972 0.91799 0.92661 0.92727 1.00402 0.95843 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 8.99 71.98 0.65 -3.20 16 2 C -0.08 -3.05 2.45 -10.79 -0.03 -3.08 16 3 C -0.13 -4.96 8.63 71.98 0.62 -4.34 16 4 C 0.07 2.14 1.55 45.26 0.07 2.21 16 5 H 0.06 1.85 5.25 -2.39 -0.01 1.83 16 6 C -0.12 -2.96 5.36 31.80 0.17 -2.79 16 7 C -0.12 -2.82 6.93 31.48 0.22 -2.60 16 8 C 0.03 0.91 6.38 86.45 0.55 1.46 16 9 N -0.50 -18.72 3.52 -833.25 -2.93 -21.66 16 10 C 0.08 3.45 2.15 44.91 0.10 3.54 16 11 H 0.05 2.19 7.92 -2.39 -0.02 2.18 16 12 C -0.17 -5.68 7.75 71.98 0.56 -5.12 16 13 C 0.03 1.58 4.36 29.85 0.13 1.71 16 14 C -0.48 -26.82 7.65 25.60 0.20 -26.63 16 15 H 0.05 2.79 7.75 -2.91 -0.02 2.77 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 18 Si 0.94 46.03 29.54 68.60 2.03 48.05 16 19 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 21 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 22 H 0.07 1.65 7.25 -2.39 -0.02 1.64 16 23 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.05 2.20 5.03 -2.39 -0.01 2.19 16 26 H 0.06 2.76 6.20 -2.38 -0.01 2.74 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 1.89 6.45 -2.39 -0.02 1.87 16 29 H 0.09 1.76 8.02 -2.39 -0.02 1.74 16 30 H 0.07 1.89 5.94 -2.39 -0.01 1.88 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.04 1.18 6.97 -2.39 -0.02 1.16 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.06 1.83 7.07 -2.38 -0.02 1.81 16 36 H 0.05 1.89 6.61 -2.38 -0.02 1.87 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 38 H -0.02 -1.27 8.14 -2.38 -0.02 -1.29 16 39 H 0.02 1.30 4.67 -2.39 -0.01 1.28 16 40 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -62.85 293.87 4.06 -58.80 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.99 Total: 10.17 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 3.69 Total: -38.20 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.65 Total: -78.82 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -62.85 4.06 -58.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709998322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.933 kcal (2) G-P(sol) polarization free energy of solvation -62.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds