Wall clock time and date at job start Mon Mar 30 2020 02:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46793 * 2 1 4 4 C 1.52998 * 109.47379 * 239.99520 * 2 1 3 5 5 C 1.50701 * 109.46920 * 174.99719 * 4 2 1 6 6 H 1.08004 * 120.00137 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99967 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99853 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99832 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47161 * 89.99654 * 9 7 5 11 11 H 1.48501 * 109.47099 * 209.99744 * 9 7 5 12 12 H 1.48499 * 109.47260 * 329.99788 * 9 7 5 13 13 N 1.46904 * 109.46753 * 119.99516 * 2 1 3 14 14 C 1.46898 * 110.99820 * 252.31093 * 13 2 1 15 15 H 1.09002 * 109.47606 * 321.94590 * 14 13 2 16 16 C 1.53007 * 109.47162 * 81.94383 * 14 13 2 17 17 C 1.52997 * 109.47181 * 201.93884 * 14 13 2 18 18 C 1.53001 * 109.47009 * 65.00369 * 17 14 13 19 19 C 1.53780 * 113.61278 * 272.49825 * 18 17 14 20 20 C 1.53779 * 87.08363 * 220.01731 * 19 18 17 21 21 C 1.53778 * 113.61483 * 174.99998 * 18 17 14 22 22 H 1.09003 * 109.47308 * 179.55398 * 1 2 3 23 23 H 1.08994 * 109.47812 * 299.55121 * 1 2 3 24 24 H 1.09005 * 109.47231 * 59.56063 * 1 2 3 25 25 H 1.08991 * 109.47015 * 295.00130 * 4 2 1 26 26 H 1.08999 * 109.46831 * 55.00083 * 4 2 1 27 27 H 0.97001 * 120.00238 * 179.97438 * 8 7 5 28 28 H 1.00899 * 111.00140 * 16.26760 * 13 2 1 29 29 H 1.09000 * 109.47070 * 175.98088 * 16 14 13 30 30 H 1.09000 * 109.46529 * 295.98077 * 16 14 13 31 31 H 1.08993 * 109.47048 * 55.97610 * 16 14 13 32 32 H 1.09000 * 109.47385 * 305.00334 * 17 14 13 33 33 H 1.09005 * 109.47308 * 184.99879 * 17 14 13 34 34 H 1.09000 * 112.85194 * 43.80102 * 18 17 14 35 35 H 1.09001 * 113.61349 * 334.56585 * 19 18 17 36 36 H 1.09001 * 113.61630 * 105.47107 * 19 18 17 37 37 H 1.08994 * 113.61544 * 270.88762 * 20 19 18 38 38 H 1.09004 * 113.61578 * 139.97486 * 20 19 18 39 39 H 1.08995 * 113.61727 * 254.52770 * 21 18 17 40 40 H 1.09000 * 113.61748 * 25.35090 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0860 -0.5390 7 6 4.2306 -1.1936 -2.3576 8 7 5.5412 -1.1002 -2.4131 9 14 3.3018 -2.1089 -3.6950 10 1 2.9410 -1.1641 -4.7824 11 1 4.1603 -3.1897 -4.2429 12 1 2.0657 -2.7005 -3.1231 13 7 2.0196 -0.6924 1.1996 14 6 2.5879 0.2605 2.1623 15 1 3.1288 1.0401 1.6259 16 6 1.4601 0.8929 2.9803 17 6 3.5483 -0.4736 3.1002 18 6 4.7410 -0.9995 2.2991 19 6 4.5076 -2.3917 1.6890 20 6 5.9621 -2.7156 2.0688 21 6 5.8291 -1.6500 3.1696 22 1 -0.3634 -1.0276 -0.0080 23 1 -0.3634 0.5068 0.8939 24 1 -0.3634 0.5207 -0.8861 25 1 1.7517 -1.7715 -1.2054 26 1 1.6055 -0.2619 -2.1369 27 1 6.0257 -1.5076 -3.1481 28 1 1.2876 -1.2421 1.6239 29 1 1.8859 1.5459 3.7422 30 1 0.8159 1.4751 2.3215 31 1 0.8751 0.1082 3.4600 32 1 3.0295 -1.3091 3.5702 33 1 3.9016 0.2136 3.8690 34 1 5.1288 -0.2694 1.5887 35 1 3.7721 -2.9875 2.2294 36 1 4.3310 -2.3730 0.6135 37 1 6.6838 -2.4557 1.2945 38 1 6.0981 -3.7263 2.4537 39 1 6.7193 -1.0327 3.2896 40 1 5.4552 -2.0419 4.1155 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710252588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:43 Heat of formation + Delta-G solvation = -2.402792 kcal Electronic energy + Delta-G solvation = -16728.406157 eV Core-core repulsion = 14349.877331 eV Total energy + Delta-G solvation = -2378.528827 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.54748 -36.83530 -33.52494 -31.93266 -28.53667 -27.59921 -27.52291 -24.72309 -22.69679 -22.54424 -20.27900 -19.50305 -18.51072 -16.48407 -15.30631 -14.93225 -14.36949 -14.15237 -13.57702 -13.48810 -13.03644 -12.57459 -12.44071 -12.21691 -11.78793 -11.74252 -11.65937 -11.59750 -11.23827 -11.06399 -10.71346 -10.42531 -10.33262 -10.13702 -9.78196 -9.66318 -9.51850 -9.25452 -9.19999 -8.88896 -8.33678 -7.41988 -5.83827 -3.75592 3.40508 3.48779 3.52754 4.61606 4.84104 5.14196 5.37343 5.43440 5.50952 5.56103 5.59726 5.70248 5.72826 5.76923 5.82414 5.94930 6.07512 6.17296 6.21267 6.25159 6.38373 6.40742 6.46437 6.49774 6.52138 6.59202 6.66342 6.80614 6.94158 7.16400 7.28539 7.31074 7.44730 7.56854 7.96506 8.04735 8.25408 8.80703 9.26756 9.80508 11.29749 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.011820 C = 0.007959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.817234 B = 2368.260802 C = 3516.993707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.099 3.901 3 H 0.058 0.942 4 C -0.003 4.003 5 C -0.479 4.479 6 H 0.076 0.924 7 C 0.062 3.938 8 N -0.908 5.908 9 Si 0.870 3.130 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.268 1.268 13 N -0.651 5.651 14 C 0.088 3.912 15 H 0.077 0.923 16 C -0.183 4.183 17 C -0.093 4.093 18 C -0.084 4.084 19 C -0.111 4.111 20 C -0.148 4.148 21 C -0.145 4.145 22 H 0.052 0.948 23 H 0.041 0.959 24 H 0.053 0.947 25 H 0.017 0.983 26 H 0.005 0.995 27 H 0.257 0.743 28 H 0.324 0.676 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.875 0.701 10.392 11.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.011 4.011 3 H 0.077 0.923 4 C -0.041 4.041 5 C -0.517 4.517 6 H 0.094 0.906 7 C -0.137 4.137 8 N -0.549 5.549 9 Si 0.698 3.302 10 H -0.210 1.210 11 H -0.219 1.219 12 H -0.193 1.193 13 N -0.280 5.280 14 C -0.023 4.023 15 H 0.095 0.905 16 C -0.242 4.242 17 C -0.131 4.131 18 C -0.103 4.103 19 C -0.149 4.149 20 C -0.185 4.185 21 C -0.183 4.183 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.035 0.965 26 H 0.023 0.977 27 H 0.067 0.933 28 H 0.142 0.858 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.109 0.485 9.994 11.235 hybrid contribution -1.240 -0.097 -0.451 1.323 sum -6.349 0.388 9.543 11.469 Atomic orbital electron populations 1.22535 0.98965 1.01247 1.00705 1.21573 0.90017 0.97250 0.92246 0.92341 1.19628 0.97750 0.95537 0.91219 1.20989 0.89478 1.33184 1.08087 0.90552 1.24960 0.94597 0.96401 0.97753 1.69904 1.06292 1.46442 1.32287 0.86947 0.80328 0.80035 0.82843 1.20965 1.21872 1.19323 1.60516 1.37538 1.24081 1.05906 1.21676 0.94074 0.93975 0.92528 0.90477 1.22650 1.00052 1.00900 1.00580 1.21531 0.95964 0.98964 0.96598 1.22226 0.93660 0.97706 0.96686 1.22711 0.93473 0.94839 1.03831 1.22847 0.99932 0.97294 0.98453 1.23020 0.99123 0.98828 0.97314 0.92914 0.93974 0.92769 0.96477 0.97679 0.93302 0.85822 0.92968 0.93057 0.93170 0.92778 0.93073 0.89261 0.92211 0.88492 0.90341 0.93193 0.92842 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 9.05 37.16 0.34 -2.39 16 2 C 0.10 1.86 2.45 -67.71 -0.17 1.69 16 3 H 0.06 1.16 7.22 -51.93 -0.37 0.78 16 4 C 0.00 -0.08 3.72 -27.88 -0.10 -0.18 16 5 C -0.48 -13.03 8.63 -34.44 -0.30 -13.32 16 6 H 0.08 2.24 7.91 -52.48 -0.42 1.82 16 7 C 0.06 1.77 5.47 -17.82 -0.10 1.68 16 8 N -0.91 -27.62 13.96 55.43 0.77 -26.85 16 9 Si 0.87 21.98 27.47 -169.99 -4.67 17.31 16 10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 12 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 13 N -0.65 -11.31 4.90 -99.74 -0.49 -11.80 16 14 C 0.09 1.38 2.47 -67.71 -0.17 1.21 16 15 H 0.08 1.38 7.47 -51.93 -0.39 0.99 16 16 C -0.18 -2.36 9.02 37.16 0.34 -2.02 16 17 C -0.09 -1.39 4.76 -26.73 -0.13 -1.52 16 18 C -0.08 -1.49 3.52 -89.81 -0.32 -1.80 16 19 C -0.11 -2.11 6.89 -25.92 -0.18 -2.29 16 20 C -0.15 -2.59 8.08 -25.91 -0.21 -2.80 16 21 C -0.15 -2.29 7.64 -25.92 -0.20 -2.49 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.57 6.87 -51.93 -0.36 0.22 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 26 H 0.01 0.12 7.57 -51.93 -0.39 -0.27 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.32 5.13 7.93 -39.29 -0.31 4.82 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.67 6.92 -51.93 -0.36 0.31 16 31 H 0.05 0.60 8.07 -51.93 -0.42 0.18 16 32 H 0.05 0.78 7.84 -51.93 -0.41 0.38 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.86 8.05 -51.93 -0.42 1.44 16 35 H 0.06 1.05 7.90 -51.93 -0.41 0.64 16 36 H 0.10 2.28 7.36 -51.93 -0.38 1.90 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -28.39 310.49 -8.45 -36.84 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.56 Total: 4.05 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -1.19 Total: -24.24 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.28 Total: -38.64 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.39 -8.45 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710252588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.438 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds