Wall clock time and date at job start Mon Mar 30 2020 02:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46793 * 2 1 4 4 C 1.52998 * 109.47379 * 239.99520 * 2 1 3 5 5 C 1.50701 * 109.46920 * 174.99719 * 4 2 1 6 6 H 1.08004 * 120.00137 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99967 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99853 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99832 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47161 * 89.99654 * 9 7 5 11 11 H 1.48501 * 109.47099 * 209.99744 * 9 7 5 12 12 H 1.48499 * 109.47260 * 329.99788 * 9 7 5 13 13 N 1.46904 * 109.46753 * 119.99516 * 2 1 3 14 14 C 1.46898 * 110.99820 * 252.31093 * 13 2 1 15 15 H 1.09002 * 109.47606 * 321.94590 * 14 13 2 16 16 C 1.53007 * 109.47162 * 81.94383 * 14 13 2 17 17 C 1.52997 * 109.47181 * 201.93884 * 14 13 2 18 18 C 1.53001 * 109.47009 * 65.00369 * 17 14 13 19 19 C 1.53780 * 113.61278 * 272.49825 * 18 17 14 20 20 C 1.53779 * 87.08363 * 220.01731 * 19 18 17 21 21 C 1.53778 * 113.61483 * 174.99998 * 18 17 14 22 22 H 1.09003 * 109.47308 * 179.55398 * 1 2 3 23 23 H 1.08994 * 109.47812 * 299.55121 * 1 2 3 24 24 H 1.09005 * 109.47231 * 59.56063 * 1 2 3 25 25 H 1.08991 * 109.47015 * 295.00130 * 4 2 1 26 26 H 1.08999 * 109.46831 * 55.00083 * 4 2 1 27 27 H 0.97001 * 120.00238 * 179.97438 * 8 7 5 28 28 H 1.00899 * 111.00140 * 16.26760 * 13 2 1 29 29 H 1.09000 * 109.47070 * 175.98088 * 16 14 13 30 30 H 1.09000 * 109.46529 * 295.98077 * 16 14 13 31 31 H 1.08993 * 109.47048 * 55.97610 * 16 14 13 32 32 H 1.09000 * 109.47385 * 305.00334 * 17 14 13 33 33 H 1.09005 * 109.47308 * 184.99879 * 17 14 13 34 34 H 1.09000 * 112.85194 * 43.80102 * 18 17 14 35 35 H 1.09001 * 113.61349 * 334.56585 * 19 18 17 36 36 H 1.09001 * 113.61630 * 105.47107 * 19 18 17 37 37 H 1.08994 * 113.61544 * 270.88762 * 20 19 18 38 38 H 1.09004 * 113.61578 * 139.97486 * 20 19 18 39 39 H 1.08995 * 113.61727 * 254.52770 * 21 18 17 40 40 H 1.09000 * 113.61748 * 25.35090 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0860 -0.5390 7 6 4.2306 -1.1936 -2.3576 8 7 5.5412 -1.1002 -2.4131 9 14 3.3018 -2.1089 -3.6950 10 1 2.9410 -1.1641 -4.7824 11 1 4.1603 -3.1897 -4.2429 12 1 2.0657 -2.7005 -3.1231 13 7 2.0196 -0.6924 1.1996 14 6 2.5879 0.2605 2.1623 15 1 3.1288 1.0401 1.6259 16 6 1.4601 0.8929 2.9803 17 6 3.5483 -0.4736 3.1002 18 6 4.7410 -0.9995 2.2991 19 6 4.5076 -2.3917 1.6890 20 6 5.9621 -2.7156 2.0688 21 6 5.8291 -1.6500 3.1696 22 1 -0.3634 -1.0276 -0.0080 23 1 -0.3634 0.5068 0.8939 24 1 -0.3634 0.5207 -0.8861 25 1 1.7517 -1.7715 -1.2054 26 1 1.6055 -0.2619 -2.1369 27 1 6.0257 -1.5076 -3.1481 28 1 1.2876 -1.2421 1.6239 29 1 1.8859 1.5459 3.7422 30 1 0.8159 1.4751 2.3215 31 1 0.8751 0.1082 3.4600 32 1 3.0295 -1.3091 3.5702 33 1 3.9016 0.2136 3.8690 34 1 5.1288 -0.2694 1.5887 35 1 3.7721 -2.9875 2.2294 36 1 4.3310 -2.3730 0.6135 37 1 6.6838 -2.4557 1.2945 38 1 6.0981 -3.7263 2.4537 39 1 6.7193 -1.0327 3.2896 40 1 5.4552 -2.0419 4.1155 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710252588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:43 Heat of formation + Delta-G solvation = -18.943356 kcal Electronic energy + Delta-G solvation = -16729.123410 eV Core-core repulsion = 14349.877331 eV Total energy + Delta-G solvation = -2379.246079 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.94866 -38.28436 -35.22918 -33.83367 -30.26608 -29.04071 -28.78417 -26.15579 -24.54008 -23.97581 -21.67162 -21.07222 -19.96446 -18.65732 -16.73242 -16.46362 -16.06401 -15.71669 -15.08227 -15.00858 -14.43123 -14.31044 -13.67661 -13.64635 -13.52323 -13.30632 -13.03662 -12.95215 -12.65711 -12.57014 -12.29252 -12.13564 -11.78707 -11.64081 -11.54781 -11.34993 -11.18252 -10.92210 -10.71247 -10.61980 -10.56776 -8.78350 -8.08259 -6.03082 1.36901 1.39864 1.50004 2.47260 3.25826 3.54225 3.84867 4.01999 4.04368 4.23646 4.29486 4.35895 4.43033 4.51631 4.61786 4.64307 4.83171 4.90068 4.96897 5.01097 5.04333 5.08995 5.11367 5.16161 5.21967 5.23140 5.32621 5.36543 5.38869 5.47565 5.63870 5.72171 5.75809 5.85954 5.96852 6.51184 6.62991 6.96012 7.05594 7.55559 9.08346 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.011820 C = 0.007959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.817234 B = 2368.260802 C = 3516.993707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 H 0.041 0.959 4 C -0.003 4.003 5 C -0.466 4.466 6 H 0.039 0.961 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.933 3.067 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.252 1.252 13 N -0.667 5.667 14 C 0.089 3.911 15 H 0.042 0.958 16 C -0.171 4.171 17 C -0.084 4.084 18 C -0.086 4.086 19 C -0.109 4.109 20 C -0.151 4.151 21 C -0.125 4.125 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.013 0.987 26 H 0.006 0.994 27 H 0.255 0.745 28 H 0.337 0.663 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.250 0.154 12.355 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.005 4.005 3 H 0.059 0.941 4 C -0.041 4.041 5 C -0.504 4.504 6 H 0.058 0.942 7 C -0.194 4.194 8 N -0.599 5.599 9 Si 0.759 3.241 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.176 1.176 13 N -0.297 5.297 14 C -0.021 4.021 15 H 0.061 0.939 16 C -0.230 4.230 17 C -0.122 4.122 18 C -0.105 4.105 19 C -0.146 4.146 20 C -0.189 4.189 21 C -0.163 4.163 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.031 0.969 26 H 0.024 0.976 27 H 0.064 0.936 28 H 0.156 0.844 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.513 -0.053 11.971 14.133 hybrid contribution -0.433 0.106 -1.038 1.130 sum -7.946 0.053 10.933 13.515 Atomic orbital electron populations 1.22382 0.95556 1.02184 1.02133 1.21310 0.92605 0.95529 0.91063 0.94072 1.19616 0.94797 0.95833 0.93840 1.21193 0.91682 1.31225 1.06335 0.94239 1.25773 0.95307 0.97843 1.00488 1.70074 1.08123 1.48362 1.33324 0.85927 0.79409 0.78753 0.80025 1.20162 1.22160 1.17614 1.60332 1.38195 1.25034 1.06177 1.21598 0.95051 0.93055 0.92387 0.93940 1.22495 0.98777 1.01368 1.00335 1.21487 0.94544 0.99850 0.96311 1.22081 0.95750 0.96005 0.96645 1.22606 0.94949 0.96513 1.00557 1.22809 0.98088 0.99361 0.98632 1.22940 0.98482 0.97367 0.97462 0.92141 0.91508 0.92458 0.96904 0.97557 0.93605 0.84410 0.91541 0.93187 0.91414 0.90952 0.90969 0.94075 0.90133 0.94005 0.93525 0.90900 0.92366 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.64 9.05 71.98 0.65 -3.99 16 2 C 0.10 3.90 2.45 44.91 0.11 4.01 16 3 H 0.04 1.66 7.22 -2.39 -0.02 1.64 16 4 C 0.00 -0.13 3.72 29.85 0.11 -0.02 16 5 C -0.47 -26.47 8.63 25.60 0.22 -26.25 16 6 H 0.04 2.49 7.91 -2.91 -0.02 2.47 16 7 C 0.00 0.02 5.47 84.66 0.46 0.48 16 8 N -0.96 -61.16 13.96 21.45 0.30 -60.86 16 9 Si 0.93 46.18 27.47 68.60 1.88 48.07 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 11 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 12 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16 13 N -0.67 -22.67 4.90 -469.45 -2.30 -24.97 16 14 C 0.09 2.72 2.47 44.92 0.11 2.83 16 15 H 0.04 1.58 7.47 -2.39 -0.02 1.56 16 16 C -0.17 -3.87 9.02 71.98 0.65 -3.22 16 17 C -0.08 -2.37 4.76 30.59 0.15 -2.23 16 18 C -0.09 -3.08 3.52 -10.27 -0.04 -3.11 16 19 C -0.11 -4.20 6.89 31.12 0.21 -3.99 16 20 C -0.15 -5.36 8.08 31.12 0.25 -5.11 16 21 C -0.13 -3.76 7.64 31.12 0.24 -3.52 16 22 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.07 1.58 6.87 -2.39 -0.02 1.56 16 24 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 26 H 0.01 0.29 7.57 -2.39 -0.02 0.27 16 27 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 28 H 0.34 9.84 7.93 -89.69 -0.71 9.13 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.15 6.92 -2.39 -0.02 1.13 16 31 H 0.07 1.33 8.07 -2.39 -0.02 1.31 16 32 H 0.07 1.82 7.84 -2.39 -0.02 1.80 16 33 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.04 1.85 8.05 -2.39 -0.02 1.83 16 35 H 0.08 2.74 7.90 -2.39 -0.02 2.72 16 36 H 0.04 2.07 7.36 -2.39 -0.02 2.06 16 37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.10 2.41 8.10 -2.39 -0.02 2.39 16 Total: -1.00 -65.38 310.49 3.22 -62.16 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.21 Total: 19.73 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 3.13 Total: -44.12 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -2.00 Total: -85.83 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.88 Total: 48.07 kcal Total: -65.38 3.22 -62.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710252588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.218 kcal (2) G-P(sol) polarization free energy of solvation -65.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds