Wall clock time and date at job start Mon Mar 30 2020 02:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47253 * 2 1 4 4 C 1.52999 * 109.47411 * 239.99885 * 2 1 3 5 5 C 1.52995 * 109.47604 * 174.99949 * 4 2 1 6 6 C 1.53782 * 113.61540 * 272.50032 * 5 4 2 7 7 C 1.53777 * 87.08421 * 220.01691 * 6 5 4 8 8 C 1.53782 * 113.61576 * 175.00233 * 5 4 2 9 9 N 1.46898 * 109.47171 * 120.00033 * 2 1 3 10 10 C 1.46901 * 110.99986 * 277.27186 * 9 2 1 11 11 H 1.08997 * 109.47170 * 346.72416 * 10 9 2 12 12 C 1.53000 * 109.47032 * 106.72134 * 10 9 2 13 13 C 1.52998 * 109.47252 * 226.72178 * 10 9 2 14 14 C 1.50696 * 109.46944 * 65.00087 * 13 10 9 15 15 H 1.08001 * 120.00551 * 359.97438 * 14 13 10 16 16 C 1.37881 * 119.99998 * 179.97438 * 14 13 10 17 17 N 1.31513 * 119.99911 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00039 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46780 * 89.99921 * 18 16 14 20 20 H 1.48499 * 109.46754 * 209.99810 * 18 16 14 21 21 H 1.48500 * 109.46795 * 330.00130 * 18 16 14 22 22 H 1.09002 * 109.46861 * 184.58704 * 1 2 3 23 23 H 1.08995 * 109.47467 * 304.58499 * 1 2 3 24 24 H 1.09004 * 109.47163 * 64.59246 * 1 2 3 25 25 H 1.08998 * 109.47185 * 295.00152 * 4 2 1 26 26 H 1.09004 * 109.46803 * 54.99783 * 4 2 1 27 27 H 1.08993 * 112.84850 * 43.80109 * 5 4 2 28 28 H 1.09001 * 113.61424 * 334.56448 * 6 5 4 29 29 H 1.08999 * 113.61551 * 105.46632 * 6 5 4 30 30 H 1.09002 * 113.61200 * 270.88521 * 7 6 5 31 31 H 1.08995 * 113.61866 * 139.98015 * 7 6 5 32 32 H 1.08998 * 113.60902 * 254.52635 * 8 5 4 33 33 H 1.08991 * 113.61629 * 25.35007 * 8 5 4 34 34 H 1.00898 * 110.99803 * 41.22825 * 9 2 1 35 35 H 1.08999 * 109.47103 * 305.41234 * 12 10 9 36 36 H 1.08999 * 109.47243 * 65.40881 * 12 10 9 37 37 H 1.08996 * 109.47496 * 185.40694 * 12 10 9 38 38 H 1.09000 * 109.47144 * 304.99890 * 13 10 9 39 39 H 1.09003 * 109.46773 * 185.00003 * 13 10 9 40 40 H 0.96999 * 119.99909 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 6 4.0630 0.6564 -2.0240 7 6 5.1480 -0.2236 -2.6667 8 6 4.1905 -1.4109 -2.4701 9 7 2.0196 -0.6925 1.1994 10 6 2.0315 0.2086 2.3596 11 1 1.9011 1.2368 2.0223 12 6 0.8905 -0.1658 3.3077 13 6 3.3677 0.0780 3.0932 14 6 4.4805 0.5632 2.2002 15 1 4.2570 0.9278 1.2085 16 6 5.7839 0.5416 2.6493 17 7 6.0560 0.0981 3.8571 18 14 7.1632 1.1438 1.5427 19 1 7.3738 2.5975 1.7607 20 1 8.4127 0.4087 1.8646 21 1 6.7993 0.9038 0.1231 22 1 -0.3633 -1.0244 0.0822 23 1 -0.3634 0.5833 0.8460 24 1 -0.3634 0.4409 -0.9283 25 1 1.7517 -1.7715 -1.2056 26 1 1.6054 -0.2617 -2.1369 27 1 4.0429 -0.7926 -0.3507 28 1 3.3502 1.0640 -2.7408 29 1 4.4588 1.4105 -1.3437 30 1 6.0599 -0.2953 -2.0738 31 1 5.3399 0.0140 -3.7130 32 1 4.6892 -2.3256 -2.1499 33 1 3.5121 -1.5697 -3.3082 34 1 1.4722 -1.5186 1.3887 35 1 -0.0519 -0.1659 2.7598 36 1 1.0713 -1.1586 3.7197 37 1 0.8390 0.5604 4.1189 38 1 3.5393 -0.9667 3.3525 39 1 3.3433 0.6788 4.0024 40 1 6.9730 0.0826 4.1729 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710252590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:46 Heat of formation + Delta-G solvation = -23.893622 kcal Electronic energy + Delta-G solvation = -16601.130039 eV Core-core repulsion = 14221.669300 eV Total energy + Delta-G solvation = -2379.460739 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.98673 -38.35597 -35.28452 -33.77373 -29.88917 -28.88489 -28.80346 -26.37409 -24.98977 -24.01672 -21.61237 -21.13924 -20.05643 -18.30138 -16.78907 -16.48160 -16.24054 -15.92338 -15.16193 -14.74365 -14.50187 -14.20481 -13.72025 -13.45029 -13.42690 -13.22491 -13.16304 -13.06440 -12.72132 -12.55410 -12.36525 -12.23738 -11.93052 -11.82245 -11.70880 -11.25671 -11.16380 -10.93384 -10.81637 -10.62298 -10.45060 -8.82941 -8.06440 -6.08962 1.38005 1.39320 1.50517 2.47451 3.26705 3.52871 3.82270 3.92621 3.99681 4.08766 4.25891 4.38884 4.42790 4.51825 4.56535 4.63714 4.81892 4.88285 4.92034 4.94483 5.00769 5.04580 5.08856 5.12325 5.21231 5.25665 5.30038 5.35344 5.38773 5.47937 5.60812 5.65119 5.77520 5.93445 5.97045 6.43173 6.61805 6.93193 7.05945 7.55619 9.06134 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.016421 B = 0.013128 C = 0.007836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.764319 B = 2132.329223 C = 3572.522361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.052 0.948 4 C -0.083 4.083 5 C -0.107 4.107 6 C -0.139 4.139 7 C -0.145 4.145 8 C -0.129 4.129 9 N -0.672 5.672 10 C 0.102 3.898 11 H 0.046 0.954 12 C -0.163 4.163 13 C 0.038 3.962 14 C -0.482 4.482 15 H 0.059 0.941 16 C -0.006 4.006 17 N -0.943 5.943 18 Si 0.941 3.059 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.260 1.260 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.335 0.665 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.052 0.948 38 H -0.012 1.012 39 H -0.016 1.016 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.218 -1.259 -12.383 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.023 4.023 3 H 0.071 0.929 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.177 4.177 7 C -0.182 4.182 8 C -0.167 4.167 9 N -0.303 5.303 10 C -0.007 4.007 11 H 0.064 0.936 12 C -0.222 4.222 13 C 0.000 4.000 14 C -0.520 4.520 15 H 0.077 0.923 16 C -0.201 4.201 17 N -0.586 5.586 18 Si 0.768 3.232 19 H -0.206 1.206 20 H -0.217 1.217 21 H -0.184 1.184 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.154 0.846 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.007 0.993 39 H 0.002 0.998 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.412 -1.178 -12.437 15.641 hybrid contribution 0.391 0.420 0.463 0.737 sum -9.021 -0.758 -11.974 15.011 Atomic orbital electron populations 1.22505 0.96171 1.02230 1.02233 1.21623 0.92825 0.97041 0.90847 0.92937 1.21458 0.93889 1.00424 0.96313 1.22445 0.96417 0.95858 0.97813 1.22987 0.98793 0.96631 0.99264 1.22758 0.96826 0.97848 1.00791 1.22922 0.98409 0.96496 0.98827 1.60356 1.58679 1.08160 1.03121 1.21435 0.94307 0.94637 0.90360 0.93560 1.22371 0.98261 1.01514 1.00034 1.19043 0.92803 0.94436 0.93680 1.21453 0.91762 1.38447 1.00345 0.92288 1.25772 1.01345 0.96725 0.96227 1.70098 1.19421 1.50089 1.19005 0.85791 0.79087 0.78045 0.80274 1.20559 1.21667 1.18404 0.91802 0.93296 0.91178 0.91734 0.90525 0.90825 0.88582 0.94640 0.92861 0.89986 0.92668 0.88332 0.84605 0.91214 0.92969 0.92907 0.99345 0.99799 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 8.94 71.98 0.64 -3.25 16 2 C 0.09 2.56 2.49 44.91 0.11 2.68 16 3 H 0.05 1.80 7.44 -2.39 -0.02 1.78 16 4 C -0.08 -2.21 4.73 30.59 0.14 -2.06 16 5 C -0.11 -3.46 3.59 -10.27 -0.04 -3.50 16 6 C -0.14 -4.31 7.63 31.12 0.24 -4.07 16 7 C -0.14 -4.22 8.08 31.12 0.25 -3.97 16 8 C -0.13 -3.51 7.64 31.12 0.24 -3.28 16 9 N -0.67 -23.94 5.21 -469.48 -2.44 -26.39 16 10 C 0.10 4.10 2.49 44.91 0.11 4.21 16 11 H 0.05 1.91 7.20 -2.39 -0.02 1.90 16 12 C -0.16 -5.30 9.06 71.98 0.65 -4.65 16 13 C 0.04 2.02 4.65 29.85 0.14 2.16 16 14 C -0.48 -27.51 8.84 25.60 0.23 -27.29 16 15 H 0.06 3.30 7.49 -2.91 -0.02 3.28 16 16 C -0.01 -0.33 5.46 84.66 0.46 0.14 16 17 N -0.94 -59.48 13.29 21.45 0.28 -59.19 16 18 Si 0.94 46.46 29.54 68.60 2.03 48.49 16 19 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 20 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 21 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 22 H 0.06 1.30 8.06 -2.39 -0.02 1.28 16 23 H 0.05 1.14 6.95 -2.39 -0.02 1.12 16 24 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 26 H 0.08 1.68 7.84 -2.38 -0.02 1.66 16 27 H 0.07 3.16 7.36 -2.39 -0.02 3.14 16 28 H 0.10 2.42 7.90 -2.39 -0.02 2.40 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.10 2.13 8.10 -2.39 -0.02 2.12 16 34 H 0.34 10.69 7.91 -89.70 -0.71 9.98 16 35 H 0.07 1.84 6.76 -2.39 -0.02 1.83 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -64.93 315.70 3.31 -61.61 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.26 Total: 18.36 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 3.18 Total: -42.88 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -2.16 Total: -85.58 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -64.93 3.31 -61.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710252590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.720 kcal (2) G-P(sol) polarization free energy of solvation -64.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds