Wall clock time and date at job start Mon Mar 30 2020 02:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 C 1.53782 * 113.61417 * 159.13898 * 4 2 1 6 6 C 1.53957 * 87.01469 * 220.04516 * 5 4 2 7 7 N 1.46894 * 113.53895 * 270.80703 * 6 5 4 8 8 C 1.46897 * 111.00329 * 252.49847 * 7 6 5 9 9 H 1.08994 * 109.46990 * 324.99998 * 8 7 6 10 10 C 1.52997 * 109.47103 * 85.00359 * 8 7 6 11 11 C 1.53003 * 109.47177 * 205.00008 * 8 7 6 12 12 C 1.50700 * 109.47172 * 65.00036 * 11 8 7 13 13 H 1.08002 * 119.99869 * 0.02562 * 12 11 8 14 14 C 1.37873 * 120.00177 * 180.02562 * 12 11 8 15 15 N 1.31518 * 120.00226 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47373 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47391 * 119.99998 * 16 14 12 19 19 H 1.48507 * 109.47233 * 240.00083 * 16 14 12 20 20 C 1.53776 * 113.61296 * 61.52857 * 4 2 1 21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 27 27 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 28 28 H 1.08998 * 112.84813 * 290.33435 * 4 2 1 29 29 H 1.09001 * 113.61419 * 334.56634 * 5 4 2 30 30 H 1.09001 * 113.61317 * 105.46831 * 5 4 2 31 31 H 1.09002 * 113.74254 * 139.94437 * 6 5 4 32 32 H 1.00897 * 111.00011 * 16.45634 * 7 6 5 33 33 H 1.08994 * 109.47492 * 59.99946 * 10 8 7 34 34 H 1.09006 * 109.47267 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.47050 * 299.99881 * 10 8 7 36 36 H 1.08995 * 109.47374 * 185.00044 * 11 8 7 37 37 H 1.08994 * 109.47202 * 305.00369 * 11 8 7 38 38 H 0.97002 * 119.99963 * 180.02562 * 15 14 12 39 39 H 1.09001 * 113.61151 * 254.52954 * 20 4 2 40 40 H 1.08996 * 113.61594 * 25.43448 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.4867 -1.2268 1.1213 6 6 3.0233 -2.4961 1.8591 7 7 3.1341 -2.3985 3.3206 8 6 4.2404 -3.2252 3.8211 9 1 4.3217 -4.1282 3.2162 10 6 5.5474 -2.4344 3.7351 11 6 3.9718 -3.6093 5.2775 12 6 2.7518 -4.4912 5.3476 13 1 2.2214 -4.7520 4.4437 14 6 2.3127 -4.9651 6.5656 15 7 2.9583 -4.6471 7.6665 16 14 0.8009 -6.0589 6.6524 17 1 0.2605 -6.2659 5.2848 18 1 1.1718 -7.3703 7.2423 19 1 -0.2320 -5.4096 7.4991 20 6 1.6120 -2.1963 1.3268 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.8520 -0.1633 2.1665 29 1 3.7963 -1.4084 0.0920 30 1 4.2080 -0.6330 1.6828 31 1 3.4532 -3.4159 1.4625 32 1 3.2396 -1.4383 3.6119 33 1 5.4661 -1.5313 4.3399 34 1 6.3684 -3.0480 4.1060 35 1 5.7388 -2.1607 2.6975 36 1 4.8320 -4.1469 5.6762 37 1 3.8024 -2.7075 5.8658 38 1 2.6496 -4.9809 8.5234 39 1 0.8221 -2.3840 2.0540 40 1 1.4082 -2.6435 0.3539 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714656991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:29 Heat of formation + Delta-G solvation = -9.653551 kcal Electronic energy + Delta-G solvation = -16009.534332 eV Core-core repulsion = 13630.691089 eV Total energy + Delta-G solvation = -2378.843243 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.51421 -36.00508 -33.79674 -32.20190 -28.76550 -27.42915 -27.18147 -25.01351 -24.20287 -22.87970 -20.52100 -19.58226 -18.77062 -16.16629 -15.33197 -15.17197 -14.63705 -14.31782 -13.71104 -13.51246 -13.34123 -12.78024 -12.54514 -12.30908 -12.24780 -12.04443 -11.71479 -11.53370 -11.40937 -11.10330 -11.01258 -10.86341 -10.60337 -10.42821 -10.29314 -10.01047 -9.91950 -9.62001 -9.12068 -8.90364 -8.21194 -7.49901 -5.83251 -3.80383 3.41413 3.48587 3.54276 4.60967 4.64117 4.74285 4.83970 4.91943 5.10735 5.29641 5.46149 5.51482 5.55816 5.61832 5.64693 5.78484 5.83425 5.85332 5.89413 5.94903 6.00218 6.06187 6.09344 6.17297 6.23401 6.30522 6.47965 6.50048 6.57176 6.67489 6.71923 7.08736 7.65176 7.76007 8.10345 8.12920 8.24815 8.65925 9.25489 9.80798 11.29018 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029330 B = 0.006310 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.410269 B = 4436.053281 C = 5087.864196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.101 4.101 5 C -0.167 4.167 6 C 0.073 3.927 7 N -0.643 5.643 8 C 0.090 3.910 9 H 0.064 0.936 10 C -0.179 4.179 11 C 0.032 3.968 12 C -0.485 4.485 13 H 0.059 0.941 14 C 0.048 3.952 15 N -0.905 5.905 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.287 1.287 20 C -0.130 4.130 21 H 0.053 0.947 22 H 0.047 0.953 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.332 0.668 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.017 0.983 37 H 0.016 0.984 38 H 0.256 0.744 39 H 0.076 0.924 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 9.183 -14.823 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.202 4.202 4 C -0.120 4.120 5 C -0.206 4.206 6 C -0.039 4.039 7 N -0.272 5.272 8 C -0.019 4.019 9 H 0.082 0.918 10 C -0.238 4.238 11 C -0.006 4.006 12 C -0.524 4.524 13 H 0.077 0.923 14 C -0.150 4.150 15 N -0.547 5.547 16 Si 0.718 3.282 17 H -0.199 1.199 18 H -0.215 1.215 19 H -0.213 1.213 20 C -0.168 4.168 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.035 0.965 37 H 0.034 0.966 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.941 8.659 -14.501 16.916 hybrid contribution -0.038 0.006 -0.103 0.110 sum -0.980 8.666 -14.604 17.010 Atomic orbital electron populations 1.21800 0.95435 1.01865 1.01172 1.21096 0.95587 0.95840 0.97901 1.21808 1.00893 0.96273 1.01266 1.22548 0.95852 0.95897 0.97684 1.23805 0.96460 0.99406 1.00979 1.22641 0.96027 0.96276 0.88952 1.60348 1.46609 1.13686 1.06547 1.21868 0.85691 0.94010 1.00354 0.91785 1.22598 1.00511 1.00988 0.99738 1.19129 0.96740 0.96489 0.88225 1.21200 1.10708 1.27810 0.92640 0.92287 1.25010 0.97025 0.96997 0.96015 1.69980 1.40403 1.46434 0.97843 0.86584 0.83486 0.80319 0.77855 1.19854 1.21461 1.21349 1.23081 0.98448 0.94884 1.00390 0.92750 0.93379 0.92459 0.91675 0.92889 0.93274 0.92801 0.89411 0.90700 0.92078 0.90787 0.84881 0.93192 0.92660 0.94274 0.96513 0.96571 0.93464 0.90548 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.01 37.16 0.33 -1.14 16 2 C -0.09 -0.90 2.64 -90.62 -0.24 -1.14 16 3 C -0.15 -1.40 9.17 37.16 0.34 -1.05 16 4 C -0.10 -1.26 2.87 -89.81 -0.26 -1.51 16 5 C -0.17 -2.12 7.15 -25.83 -0.18 -2.31 16 6 C 0.07 1.13 4.10 -66.81 -0.27 0.85 16 7 N -0.64 -12.04 6.03 -98.80 -0.60 -12.64 16 8 C 0.09 1.84 2.52 -67.71 -0.17 1.66 16 9 H 0.06 1.34 7.46 -51.93 -0.39 0.96 16 10 C -0.18 -3.05 9.16 37.16 0.34 -2.71 16 11 C 0.03 0.82 4.65 -27.88 -0.13 0.69 16 12 C -0.48 -13.88 8.84 -34.44 -0.30 -14.18 16 13 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 14 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 15 N -0.91 -27.83 13.29 55.43 0.74 -27.09 16 16 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 17 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 C -0.13 -1.83 6.55 -25.92 -0.17 -2.00 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.60 7.50 -51.93 -0.39 0.21 16 24 H 0.06 0.68 7.98 -51.93 -0.41 0.26 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 29 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 30 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 31 H 0.07 1.19 7.47 -51.93 -0.39 0.80 16 32 H 0.33 5.90 7.85 -39.29 -0.31 5.59 16 33 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.58 8.03 -51.93 -0.42 0.17 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 318.26 15.07 4.80 4.80 Total: -1.00 -29.81 318.26 -8.64 -38.45 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.74 Total: 0.58 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -0.81 Total: -21.53 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.14 Total: -39.73 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.81 -8.64 -38.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714656991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.792 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds