Wall clock time and date at job start Mon Mar 30 2020 02:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 5 5 C 1.53782 * 113.61417 * 159.13898 * 4 2 1 6 6 C 1.53957 * 87.01469 * 220.04516 * 5 4 2 7 7 N 1.46894 * 113.53895 * 270.80703 * 6 5 4 8 8 C 1.46897 * 111.00329 * 252.49847 * 7 6 5 9 9 H 1.08994 * 109.46990 * 324.99998 * 8 7 6 10 10 C 1.52997 * 109.47103 * 85.00359 * 8 7 6 11 11 C 1.53003 * 109.47177 * 205.00008 * 8 7 6 12 12 C 1.50700 * 109.47172 * 65.00036 * 11 8 7 13 13 H 1.08002 * 119.99869 * 0.02562 * 12 11 8 14 14 C 1.37873 * 120.00177 * 180.02562 * 12 11 8 15 15 N 1.31518 * 120.00226 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00009 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47373 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47391 * 119.99998 * 16 14 12 19 19 H 1.48507 * 109.47233 * 240.00083 * 16 14 12 20 20 C 1.53776 * 113.61296 * 61.52857 * 4 2 1 21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47375 * 240.00133 * 2 1 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 27 27 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 28 28 H 1.08998 * 112.84813 * 290.33435 * 4 2 1 29 29 H 1.09001 * 113.61419 * 334.56634 * 5 4 2 30 30 H 1.09001 * 113.61317 * 105.46831 * 5 4 2 31 31 H 1.09002 * 113.74254 * 139.94437 * 6 5 4 32 32 H 1.00897 * 111.00011 * 16.45634 * 7 6 5 33 33 H 1.08994 * 109.47492 * 59.99946 * 10 8 7 34 34 H 1.09006 * 109.47267 * 180.02562 * 10 8 7 35 35 H 1.09001 * 109.47050 * 299.99881 * 10 8 7 36 36 H 1.08995 * 109.47374 * 185.00044 * 11 8 7 37 37 H 1.08994 * 109.47202 * 305.00369 * 11 8 7 38 38 H 0.97002 * 119.99963 * 180.02562 * 15 14 12 39 39 H 1.09001 * 113.61151 * 254.52954 * 20 4 2 40 40 H 1.08996 * 113.61594 * 25.43448 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.4867 -1.2268 1.1213 6 6 3.0233 -2.4961 1.8591 7 7 3.1341 -2.3985 3.3206 8 6 4.2404 -3.2252 3.8211 9 1 4.3217 -4.1282 3.2162 10 6 5.5474 -2.4344 3.7351 11 6 3.9718 -3.6093 5.2775 12 6 2.7518 -4.4912 5.3476 13 1 2.2214 -4.7520 4.4437 14 6 2.3127 -4.9651 6.5656 15 7 2.9583 -4.6471 7.6665 16 14 0.8009 -6.0589 6.6524 17 1 0.2605 -6.2659 5.2848 18 1 1.1718 -7.3703 7.2423 19 1 -0.2320 -5.4096 7.4991 20 6 1.6120 -2.1963 1.3268 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.8520 -0.1633 2.1665 29 1 3.7963 -1.4084 0.0920 30 1 4.2080 -0.6330 1.6828 31 1 3.4532 -3.4159 1.4625 32 1 3.2396 -1.4383 3.6119 33 1 5.4661 -1.5313 4.3399 34 1 6.3684 -3.0480 4.1060 35 1 5.7388 -2.1607 2.6975 36 1 4.8320 -4.1469 5.6762 37 1 3.8024 -2.7075 5.8658 38 1 2.6496 -4.9809 8.5234 39 1 0.8221 -2.3840 2.0540 40 1 1.4082 -2.6435 0.3539 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714656991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:29 Heat of formation + Delta-G solvation = -26.675924 kcal Electronic energy + Delta-G solvation = -16010.272477 eV Core-core repulsion = 13630.691089 eV Total energy + Delta-G solvation = -2379.581389 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.65485 -37.45660 -35.14033 -34.11805 -30.37527 -29.03085 -28.21038 -26.06807 -25.44103 -24.78126 -21.72596 -21.05517 -19.88998 -18.37009 -16.67679 -16.44086 -16.27527 -15.63673 -15.06181 -14.64899 -14.60607 -14.15651 -13.96786 -13.65390 -13.43845 -13.26029 -13.16593 -12.97567 -12.74690 -12.56132 -12.46692 -12.31544 -12.01317 -11.86750 -11.79138 -11.34505 -11.21812 -11.10990 -10.88586 -10.54809 -10.48416 -8.94234 -8.09293 -6.13931 1.40656 1.41622 1.54826 2.47784 3.21957 3.38047 3.74906 3.79679 3.94456 4.13991 4.23766 4.27495 4.48317 4.53276 4.57723 4.59903 4.73494 4.87187 4.90419 4.92946 4.94936 5.00197 5.06842 5.08153 5.23254 5.27445 5.30384 5.32379 5.35689 5.46266 5.51460 5.56202 5.64759 5.76052 5.91103 6.37634 6.57435 6.78152 7.00436 7.51694 9.03130 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029330 B = 0.006310 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.410269 B = 4436.053281 C = 5087.864196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.143 4.143 4 C -0.093 4.093 5 C -0.149 4.149 6 C 0.061 3.939 7 N -0.662 5.662 8 C 0.101 3.899 9 H 0.057 0.943 10 C -0.168 4.168 11 C 0.036 3.964 12 C -0.496 4.496 13 H 0.055 0.945 14 C -0.008 4.008 15 N -0.942 5.942 16 Si 0.957 3.043 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.283 1.283 20 C -0.128 4.128 21 H 0.046 0.954 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.336 0.664 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.066 0.934 36 H -0.008 1.008 37 H -0.011 1.011 38 H 0.258 0.742 39 H 0.050 0.950 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.847 9.694 -16.843 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 C -0.201 4.201 4 C -0.112 4.112 5 C -0.188 4.188 6 C -0.050 4.050 7 N -0.292 5.292 8 C -0.009 4.009 9 H 0.075 0.925 10 C -0.227 4.227 11 C -0.001 4.001 12 C -0.535 4.535 13 H 0.073 0.927 14 C -0.203 4.203 15 N -0.584 5.584 16 Si 0.783 3.217 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.209 1.209 20 C -0.166 4.166 21 H 0.066 0.934 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.155 0.845 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.010 0.990 37 H 0.008 0.992 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.337 9.176 -16.542 18.964 hybrid contribution 0.078 -0.154 0.526 0.553 sum -1.259 9.022 -16.016 18.426 Atomic orbital electron populations 1.21799 0.95271 1.01619 1.01581 1.21069 0.95708 0.96296 0.96939 1.21790 1.01002 0.95569 1.01703 1.22450 0.95647 0.94823 0.98255 1.23677 0.96539 0.97159 1.01470 1.22711 0.97523 0.97605 0.87168 1.60180 1.46209 1.13697 1.09083 1.21513 0.88058 0.94829 0.96452 0.92485 1.22440 0.98321 1.00359 1.01532 1.19019 0.94884 0.94558 0.91688 1.21509 1.11443 1.28021 0.92500 0.92718 1.25874 1.00198 0.98555 0.95712 1.70106 1.42154 1.47735 0.98419 0.85507 0.79597 0.78458 0.78090 1.19093 1.20661 1.20893 1.23085 0.96677 0.96479 1.00362 0.93436 0.91915 0.93048 0.90805 0.92693 0.91991 0.93272 0.90735 0.88740 0.91889 0.91344 0.84499 0.93048 0.92720 0.91531 0.99023 0.99225 0.93299 0.93145 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.01 71.98 0.65 -2.01 16 2 C -0.08 -1.51 2.64 -10.79 -0.03 -1.54 16 3 C -0.14 -2.37 9.17 71.98 0.66 -1.71 16 4 C -0.09 -2.15 2.87 -10.27 -0.03 -2.18 16 5 C -0.15 -3.41 7.15 31.18 0.22 -3.18 16 6 C 0.06 1.81 4.10 45.50 0.19 2.00 16 7 N -0.66 -24.73 6.03 -466.49 -2.81 -27.54 16 8 C 0.10 4.14 2.52 44.92 0.11 4.26 16 9 H 0.06 2.40 7.46 -2.39 -0.02 2.38 16 10 C -0.17 -5.53 9.16 71.98 0.66 -4.87 16 11 C 0.04 1.92 4.65 29.85 0.14 2.06 16 12 C -0.50 -28.96 8.84 25.60 0.23 -28.73 16 13 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 14 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 15 N -0.94 -59.02 13.29 21.45 0.28 -58.74 16 16 Si 0.96 46.50 29.54 68.60 2.03 48.52 16 17 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 20 C -0.13 -3.46 6.55 31.12 0.20 -3.26 16 21 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.05 0.99 7.50 -2.39 -0.02 0.97 16 24 H 0.07 1.27 7.98 -2.39 -0.02 1.26 16 25 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.93 8.08 -2.39 -0.02 1.91 16 29 H 0.09 1.84 7.99 -2.39 -0.02 1.82 16 30 H 0.06 1.45 8.03 -2.39 -0.02 1.43 16 31 H 0.07 2.11 7.47 -2.39 -0.02 2.09 16 32 H 0.34 11.88 7.85 -89.70 -0.70 11.18 16 33 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 34 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.07 1.83 8.03 -2.39 -0.02 1.82 16 36 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 38 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.09 2.13 8.10 -2.39 -0.02 2.11 16 Total: -1.00 -64.36 318.26 3.23 -61.13 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.26 Total: 15.80 kcal Atomic # 6 Polarization: -42.64 SS G_CDS: 3.46 Total: -39.17 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -2.53 Total: -86.28 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -64.36 3.23 -61.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714656991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.456 kcal (2) G-P(sol) polarization free energy of solvation -64.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds