Wall clock time and date at job start Mon Mar 30 2020 02:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46988 * 2 1 4 4 C 1.53001 * 109.47053 * 120.00039 * 2 1 3 5 5 C 1.53782 * 113.61310 * 59.99895 * 4 2 1 6 6 C 1.53786 * 87.07886 * 89.11755 * 5 4 2 7 7 N 1.46901 * 113.61137 * 139.97818 * 6 5 4 8 8 C 1.46908 * 110.99611 * 156.52925 * 7 6 5 9 9 H 1.09000 * 109.46973 * 35.00427 * 8 7 6 10 10 C 1.52996 * 109.47004 * 274.99818 * 8 7 6 11 11 C 1.52996 * 109.46833 * 155.00030 * 8 7 6 12 12 C 1.50702 * 109.47159 * 294.99820 * 11 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 8 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.53782 * 87.17154 * 25.39113 * 6 5 4 21 21 H 1.08993 * 109.47707 * 300.00097 * 1 2 3 22 22 H 1.09007 * 109.46933 * 59.99952 * 1 2 3 23 23 H 1.09006 * 109.47115 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47206 * 239.99996 * 2 1 3 25 25 H 1.09009 * 109.47224 * 59.99726 * 3 2 1 26 26 H 1.08998 * 109.47150 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47607 * 300.00081 * 3 2 1 28 28 H 1.09003 * 112.84643 * 288.80380 * 4 2 1 29 29 H 1.08999 * 113.61389 * 334.57002 * 5 4 2 30 30 H 1.09001 * 113.61335 * 203.66104 * 5 4 2 31 31 H 1.08999 * 113.61375 * 270.80191 * 6 5 4 32 32 H 1.00896 * 110.99985 * 280.48502 * 7 6 5 33 33 H 1.08993 * 109.47136 * 300.00279 * 10 8 7 34 34 H 1.09001 * 109.47101 * 60.00413 * 10 8 7 35 35 H 1.09000 * 109.46774 * 180.02562 * 10 8 7 36 36 H 1.09004 * 109.47066 * 175.00023 * 11 8 7 37 37 H 1.08994 * 109.47405 * 54.99853 * 11 8 7 38 38 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 39 39 H 1.09000 * 113.61694 * 89.15763 * 20 6 5 40 40 H 1.09003 * 113.61563 * 220.06169 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5810 -2.1858 1.3454 6 6 2.8466 -2.5522 0.5523 7 7 3.5047 -3.7767 1.0272 8 6 4.3219 -4.3805 -0.0339 9 1 4.7638 -3.5932 -0.6447 10 6 3.4409 -5.2726 -0.9108 11 6 5.4336 -5.2224 0.5954 12 6 6.3724 -4.3246 1.3593 13 1 6.1937 -3.2600 1.3931 14 6 7.4560 -4.8630 2.0205 15 7 7.6734 -6.1594 1.9797 16 14 8.6153 -3.7510 2.9738 17 1 8.1533 -2.3439 2.8643 18 1 8.6283 -4.1575 4.4021 19 1 9.9856 -3.8675 2.4135 20 6 3.4743 -1.2616 1.1048 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.6765 1.9564 0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.8758 -0.1512 2.1637 29 1 0.6548 -2.3893 0.8081 30 1 1.5756 -2.5757 2.3633 31 1 2.7034 -2.5403 -0.5282 32 1 4.0588 -3.5935 1.8503 33 1 2.9991 -6.0597 -0.3000 34 1 2.6488 -4.6728 -1.3591 35 1 4.0473 -5.7209 -1.6978 36 1 5.9849 -5.7411 -0.1891 37 1 4.9956 -5.9529 1.2754 38 1 8.4359 -6.5381 2.4446 39 1 3.9873 -1.3983 2.0567 40 1 4.0743 -0.7200 0.3734 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714656993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:31 Heat of formation + Delta-G solvation = -14.285037 kcal Electronic energy + Delta-G solvation = -16076.554236 eV Core-core repulsion = 13697.510157 eV Total energy + Delta-G solvation = -2379.044079 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.53389 -35.97815 -33.64527 -32.28628 -28.94129 -27.51566 -27.34924 -24.93818 -23.83096 -22.76088 -21.11027 -19.40576 -18.16158 -16.31693 -15.63119 -15.32727 -14.66647 -14.28106 -14.15212 -13.49767 -13.12806 -12.70444 -12.40830 -12.29208 -12.08576 -11.80309 -11.51461 -11.48095 -11.26987 -11.21566 -11.16055 -10.94686 -10.68904 -10.52705 -10.29351 -10.12311 -9.85728 -9.74936 -9.13240 -9.02176 -8.38230 -7.50389 -6.01322 -4.03959 3.29242 3.37255 3.40160 4.44198 4.68115 4.71147 4.88951 4.98939 5.17683 5.32680 5.36222 5.45845 5.54954 5.60564 5.65367 5.79132 5.82099 5.91600 6.01876 6.05913 6.13336 6.14074 6.17566 6.24919 6.30509 6.39339 6.43944 6.57675 6.60264 6.74663 6.97460 7.00118 7.60305 7.67665 7.99266 8.14473 8.35365 8.41901 9.02640 9.60067 11.09727 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.006566 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.989107 B = 4263.228906 C = 4928.122116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 C -0.145 4.145 4 C -0.108 4.108 5 C -0.126 4.126 6 C 0.073 3.927 7 N -0.674 5.674 8 C 0.087 3.913 9 H 0.028 0.972 10 C -0.135 4.135 11 C 0.019 3.981 12 C -0.521 4.521 13 H 0.053 0.947 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.164 4.164 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.356 0.644 33 H 0.054 0.946 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.020 0.980 37 H 0.025 0.975 38 H 0.260 0.740 39 H 0.082 0.918 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.925 10.990 -3.319 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 C -0.202 4.202 4 C -0.127 4.127 5 C -0.165 4.165 6 C -0.038 4.038 7 N -0.306 5.306 8 C -0.022 4.022 9 H 0.046 0.954 10 C -0.193 4.193 11 C -0.018 4.018 12 C -0.559 4.559 13 H 0.071 0.929 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.716 3.284 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.203 4.203 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.178 0.822 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.038 0.962 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.328 10.424 -3.376 16.494 hybrid contribution 1.561 1.187 0.552 2.037 sum -10.768 11.611 -2.825 16.085 Atomic orbital electron populations 1.21834 0.95412 1.01870 1.01200 1.20896 0.95418 0.95766 0.97626 1.21807 1.01216 0.95979 1.01223 1.22317 0.96912 0.95857 0.97580 1.23145 0.97863 0.94241 1.01214 1.22947 0.94833 0.88076 0.97985 1.60501 1.36283 1.25246 1.08597 1.21600 0.92881 0.95863 0.91885 0.95394 1.21805 0.98885 0.99717 0.98881 1.19288 0.91495 0.95149 0.95880 1.21223 1.09761 0.93576 1.31364 0.92904 1.24992 0.97768 0.94878 0.96522 1.69976 1.29129 1.10691 1.43251 0.86597 0.80980 0.80920 0.79856 1.19851 1.20992 1.21075 1.23747 0.95771 0.99059 1.01725 0.92910 0.93124 0.92305 0.91225 0.92918 0.92639 0.93052 0.91119 0.91831 0.90036 0.89718 0.82249 0.92718 0.94590 0.93458 0.96169 0.95659 0.93048 0.89950 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.99 37.16 0.33 -1.08 16 2 C -0.08 -0.87 2.57 -90.62 -0.23 -1.10 16 3 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 4 C -0.11 -1.35 3.32 -89.72 -0.30 -1.65 16 5 C -0.13 -1.74 7.28 -25.92 -0.19 -1.93 16 6 C 0.07 1.17 3.51 -66.90 -0.23 0.94 16 7 N -0.67 -13.12 6.42 -98.88 -0.63 -13.75 16 8 C 0.09 1.84 2.45 -67.71 -0.17 1.67 16 9 H 0.03 0.61 7.85 -51.93 -0.41 0.20 16 10 C -0.13 -2.49 9.40 37.16 0.35 -2.14 16 11 C 0.02 0.49 4.57 -27.88 -0.13 0.37 16 12 C -0.52 -14.36 8.12 -34.44 -0.28 -14.64 16 13 H 0.05 1.42 7.49 -52.49 -0.39 1.03 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 20 C -0.16 -2.47 7.27 -25.83 -0.19 -2.66 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.58 6.46 -51.93 -0.34 0.25 16 24 H 0.07 0.82 7.34 -51.93 -0.38 0.44 16 25 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.82 6.39 -51.93 -0.33 0.48 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.08 1.36 6.99 -51.93 -0.36 0.99 16 32 H 0.36 7.53 6.69 -39.29 -0.26 7.27 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.03 0.59 7.71 -51.93 -0.40 0.19 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.08 1.33 7.83 -51.93 -0.41 0.93 16 40 H 0.06 0.92 8.06 -51.93 -0.42 0.50 16 LS Contribution 313.33 15.07 4.72 4.72 Total: -1.00 -28.44 313.33 -8.47 -36.91 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.48 Total: 3.28 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -0.79 Total: -21.74 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.10 Total: -39.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.44 -8.47 -36.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714656993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.623 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds