Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46988 * 2 1 4 4 C 1.53001 * 109.47053 * 120.00039 * 2 1 3 5 5 C 1.53782 * 113.61310 * 59.99895 * 4 2 1 6 6 C 1.53786 * 87.07886 * 89.11755 * 5 4 2 7 7 N 1.46901 * 113.61137 * 139.97818 * 6 5 4 8 8 C 1.46908 * 110.99611 * 156.52925 * 7 6 5 9 9 H 1.09000 * 109.46973 * 35.00427 * 8 7 6 10 10 C 1.52996 * 109.47004 * 274.99818 * 8 7 6 11 11 C 1.52996 * 109.46833 * 155.00030 * 8 7 6 12 12 C 1.50702 * 109.47159 * 294.99820 * 11 8 7 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 8 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 8 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.53782 * 87.17154 * 25.39113 * 6 5 4 21 21 H 1.08993 * 109.47707 * 300.00097 * 1 2 3 22 22 H 1.09007 * 109.46933 * 59.99952 * 1 2 3 23 23 H 1.09006 * 109.47115 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47206 * 239.99996 * 2 1 3 25 25 H 1.09009 * 109.47224 * 59.99726 * 3 2 1 26 26 H 1.08998 * 109.47150 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47607 * 300.00081 * 3 2 1 28 28 H 1.09003 * 112.84643 * 288.80380 * 4 2 1 29 29 H 1.08999 * 113.61389 * 334.57002 * 5 4 2 30 30 H 1.09001 * 113.61335 * 203.66104 * 5 4 2 31 31 H 1.08999 * 113.61375 * 270.80191 * 6 5 4 32 32 H 1.00896 * 110.99985 * 280.48502 * 7 6 5 33 33 H 1.08993 * 109.47136 * 300.00279 * 10 8 7 34 34 H 1.09001 * 109.47101 * 60.00413 * 10 8 7 35 35 H 1.09000 * 109.46774 * 180.02562 * 10 8 7 36 36 H 1.09004 * 109.47066 * 175.00023 * 11 8 7 37 37 H 1.08994 * 109.47405 * 54.99853 * 11 8 7 38 38 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 39 39 H 1.09000 * 113.61694 * 89.15763 * 20 6 5 40 40 H 1.09003 * 113.61563 * 220.06169 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5810 -2.1858 1.3454 6 6 2.8466 -2.5522 0.5523 7 7 3.5047 -3.7767 1.0272 8 6 4.3219 -4.3805 -0.0339 9 1 4.7638 -3.5932 -0.6447 10 6 3.4409 -5.2726 -0.9108 11 6 5.4336 -5.2224 0.5954 12 6 6.3724 -4.3246 1.3593 13 1 6.1937 -3.2600 1.3931 14 6 7.4560 -4.8630 2.0205 15 7 7.6734 -6.1594 1.9797 16 14 8.6153 -3.7510 2.9738 17 1 8.1533 -2.3439 2.8643 18 1 8.6283 -4.1575 4.4021 19 1 9.9856 -3.8675 2.4135 20 6 3.4743 -1.2616 1.1048 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.6765 1.9564 0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.8758 -0.1512 2.1637 29 1 0.6548 -2.3893 0.8081 30 1 1.5756 -2.5757 2.3633 31 1 2.7034 -2.5403 -0.5282 32 1 4.0588 -3.5935 1.8503 33 1 2.9991 -6.0597 -0.3000 34 1 2.6488 -4.6728 -1.3591 35 1 4.0473 -5.7209 -1.6978 36 1 5.9849 -5.7411 -0.1891 37 1 4.9956 -5.9529 1.2754 38 1 8.4359 -6.5381 2.4446 39 1 3.9873 -1.3983 2.0567 40 1 4.0743 -0.7200 0.3734 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714656993.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = -30.158459 kcal Electronic energy + Delta-G solvation = -16077.242559 eV Core-core repulsion = 13697.510157 eV Total energy + Delta-G solvation = -2379.732403 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.70868 -37.55181 -35.03452 -34.09706 -30.51399 -29.28123 -28.32086 -26.05111 -25.39463 -24.38781 -22.16612 -21.13388 -19.27039 -18.50530 -16.94798 -16.78637 -16.28616 -15.75416 -15.23660 -14.83928 -14.32279 -14.11121 -13.81694 -13.57229 -13.36618 -13.32913 -13.00752 -12.95818 -12.73958 -12.63533 -12.37275 -12.33715 -12.26909 -11.97373 -11.87188 -11.36086 -11.20846 -10.99491 -10.96019 -10.75942 -10.57637 -9.04864 -8.19857 -6.29963 1.37763 1.38695 1.50611 2.39351 3.11896 3.48406 3.68095 3.70887 3.93372 4.10415 4.23419 4.34111 4.40864 4.56598 4.62366 4.69631 4.73759 4.79140 4.87449 4.90685 4.95830 5.01674 5.05359 5.09542 5.16401 5.22037 5.29565 5.32479 5.37484 5.44014 5.50567 5.54521 5.60086 5.67435 5.84477 6.21602 6.52591 6.70254 6.85386 7.38681 8.92156 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.006566 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.989107 B = 4263.228906 C = 4928.122116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.144 4.144 4 C -0.091 4.091 5 C -0.118 4.118 6 C 0.064 3.936 7 N -0.677 5.677 8 C 0.096 3.904 9 H 0.022 0.978 10 C -0.127 4.127 11 C 0.026 3.974 12 C -0.530 4.530 13 H 0.057 0.943 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.960 3.040 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.280 1.280 20 C -0.167 4.167 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.343 0.657 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.051 0.949 36 H -0.007 1.007 37 H -0.004 1.004 38 H 0.263 0.737 39 H 0.067 0.933 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.005 12.947 -3.389 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.201 4.201 4 C -0.110 4.110 5 C -0.157 4.157 6 C -0.046 4.046 7 N -0.308 5.308 8 C -0.014 4.014 9 H 0.040 0.960 10 C -0.185 4.185 11 C -0.011 4.011 12 C -0.568 4.568 13 H 0.075 0.925 14 C -0.194 4.194 15 N -0.571 5.571 16 Si 0.785 3.215 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.206 1.206 20 C -0.206 4.206 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.163 0.837 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.012 0.988 37 H 0.015 0.985 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.430 12.396 -3.461 18.601 hybrid contribution 1.885 0.561 0.550 2.042 sum -11.545 12.957 -2.911 17.597 Atomic orbital electron populations 1.21809 0.94040 1.02047 1.02133 1.20903 0.96516 0.96012 0.96227 1.21796 1.00596 0.95482 1.02218 1.22262 0.94472 0.95374 0.98888 1.23077 0.97219 0.94860 1.00495 1.23132 0.95989 0.86946 0.98565 1.60577 1.35329 1.27296 1.07623 1.21410 0.92337 0.95431 0.92217 0.96031 1.21715 0.99053 0.99327 0.98406 1.19150 0.92562 0.94872 0.94521 1.21535 1.10076 0.93937 1.31292 0.92498 1.25888 0.99626 0.96291 0.97599 1.70106 1.29991 1.12621 1.44390 0.85478 0.78526 0.79221 0.78285 1.18775 1.20449 1.20635 1.23707 0.97284 0.98862 1.00777 0.92273 0.91967 0.92495 0.92026 0.92215 0.93619 0.91825 0.90249 0.90391 0.90740 0.89312 0.83716 0.93286 0.92084 0.93002 0.98824 0.98540 0.92854 0.91410 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.99 71.98 0.65 -1.69 16 2 C -0.08 -1.53 2.57 -10.79 -0.03 -1.56 16 3 C -0.14 -2.54 9.19 71.98 0.66 -1.88 16 4 C -0.09 -2.10 3.32 -10.21 -0.03 -2.13 16 5 C -0.12 -3.04 7.28 31.12 0.23 -2.82 16 6 C 0.06 1.99 3.51 45.44 0.16 2.15 16 7 N -0.68 -26.32 6.42 -466.76 -3.00 -29.32 16 8 C 0.10 4.07 2.45 44.91 0.11 4.18 16 9 H 0.02 0.94 7.85 -2.39 -0.02 0.92 16 10 C -0.13 -4.60 9.40 71.98 0.68 -3.92 16 11 C 0.03 1.40 4.57 29.85 0.14 1.54 16 12 C -0.53 -29.73 8.12 25.60 0.21 -29.52 16 13 H 0.06 3.08 7.49 -2.91 -0.02 3.06 16 14 C 0.00 0.23 5.46 84.66 0.46 0.69 16 15 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 16 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 C -0.17 -4.89 7.27 31.18 0.23 -4.66 16 21 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.06 0.95 6.46 -2.38 -0.02 0.94 16 24 H 0.06 1.32 7.34 -2.39 -0.02 1.30 16 25 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.04 0.89 8.10 -2.39 -0.02 0.87 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 1.80 6.39 -2.39 -0.02 1.78 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.09 2.70 6.99 -2.39 -0.02 2.68 16 32 H 0.34 14.73 6.69 -89.70 -0.60 14.13 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.89 7.71 -2.39 -0.02 1.87 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 39 H 0.07 2.18 7.83 -2.39 -0.02 2.16 16 40 H 0.06 1.70 8.06 -2.39 -0.02 1.68 16 Total: -1.00 -61.03 313.33 3.14 -57.89 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.38 Total: 21.13 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 3.45 Total: -39.62 kcal Atomic # 7 Polarization: -83.09 SS G_CDS: -2.71 Total: -85.80 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -61.03 3.14 -57.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714656993.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.728 kcal (2) G-P(sol) polarization free energy of solvation -61.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds