Wall clock time and date at job start Mon Mar 30 2020 02:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46637 * 2 1 4 4 C 1.52993 * 109.47185 * 240.00247 * 2 1 3 5 5 C 1.50694 * 109.47318 * 175.00206 * 4 2 1 6 6 H 1.08004 * 119.99752 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00538 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99509 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00350 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47427 * 59.99615 * 9 7 5 11 11 H 1.48504 * 109.46995 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47008 * 299.99570 * 9 7 5 13 13 N 1.46900 * 109.47073 * 119.99707 * 2 1 3 14 14 C 1.46894 * 111.00559 * 275.00312 * 13 2 1 15 15 C 1.52997 * 109.47515 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46886 * 180.02562 * 17 16 15 19 19 C 1.53002 * 117.49654 * 243.73967 * 18 17 16 20 20 C 1.53012 * 117.49602 * 175.08431 * 18 17 16 21 21 H 1.08999 * 109.46772 * 60.00023 * 1 2 3 22 22 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47007 * 299.99951 * 1 2 3 24 24 H 1.09004 * 109.46941 * 294.99610 * 4 2 1 25 25 H 1.09004 * 109.47319 * 54.99733 * 4 2 1 26 26 H 0.97000 * 120.00055 * 179.97438 * 8 7 5 27 27 H 1.00899 * 110.99900 * 151.04363 * 13 2 1 28 28 H 1.09002 * 109.47104 * 59.99767 * 14 13 2 29 29 H 1.08998 * 109.46828 * 300.00600 * 14 13 2 30 30 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 31 31 H 1.09001 * 109.46832 * 299.99953 * 15 14 13 32 32 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 33 33 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 34 34 H 1.09001 * 109.47109 * 299.99380 * 17 16 15 35 35 H 1.09002 * 109.47508 * 59.99571 * 17 16 15 36 36 H 1.08997 * 115.55341 * 29.41508 * 18 17 16 37 37 H 1.09000 * 117.49888 * 0.02562 * 19 18 17 38 38 H 1.08997 * 117.49823 * 145.01961 * 19 18 17 39 39 H 1.08998 * 117.49442 * 214.98050 * 20 18 17 40 40 H 1.08998 * 117.49828 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5395 7 6 4.2305 -1.1934 -2.3577 8 7 3.5766 -1.8385 -3.2989 9 14 6.0921 -1.0611 -2.4367 10 1 6.6847 -1.6860 -1.2270 11 1 6.5872 -1.7622 -3.6486 12 1 6.4845 0.3699 -2.4973 13 7 2.0197 -0.6924 1.1995 14 6 2.0825 0.2225 2.3469 15 6 2.5962 -0.5329 3.5742 16 6 2.6610 0.4201 4.7694 17 6 3.1753 -0.3352 5.9966 18 6 3.2395 0.6175 7.1920 19 6 4.6170 0.9065 7.7919 20 6 3.6220 0.0235 8.5491 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.7517 -1.7715 -1.2055 25 1 1.6054 -0.2617 -2.1370 26 1 4.0610 -2.2453 -4.0344 27 1 2.9173 -1.1205 1.0288 28 1 1.0871 0.6163 2.5525 29 1 2.7588 1.0462 2.1182 30 1 3.5917 -0.9262 3.3683 31 1 1.9202 -1.3567 3.8030 32 1 3.3368 1.2442 4.5409 33 1 1.6654 0.8130 4.9752 34 1 2.4999 -1.1596 6.2253 35 1 4.1711 -0.7279 5.7906 36 1 2.5130 1.4301 7.1851 37 1 5.4775 0.4182 7.3346 38 1 4.7966 1.9091 8.1799 39 1 3.1475 0.4455 9.4350 40 1 3.8284 -1.0460 8.5902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716367067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:33 Heat of formation + Delta-G solvation = -16.284653 kcal Electronic energy + Delta-G solvation = -15158.834347 eV Core-core repulsion = 12779.703558 eV Total energy + Delta-G solvation = -2379.130789 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.01487 -36.82176 -34.39720 -32.54391 -30.56816 -27.36539 -27.29168 -23.49623 -22.62514 -22.40743 -20.90065 -20.37226 -19.24506 -16.34115 -15.96040 -15.46850 -14.88178 -14.61834 -14.31113 -14.20335 -13.30596 -12.84766 -12.49690 -12.22041 -11.77970 -11.76739 -11.61902 -11.49298 -11.30935 -11.20532 -10.90936 -10.79181 -10.65357 -10.50387 -10.48964 -10.17651 -10.06156 -9.95708 -9.17998 -9.04764 -8.37939 -7.57878 -6.01205 -4.04316 3.31673 3.36603 3.38516 3.61031 4.41677 4.44238 4.73158 4.75086 4.94855 5.07691 5.17971 5.32327 5.42099 5.43188 5.50891 5.63196 5.70797 5.86025 5.90105 5.92023 5.96503 5.99700 6.10349 6.14837 6.22753 6.29015 6.36975 6.50880 6.52806 6.62818 6.96996 6.99371 7.57250 7.66037 7.98850 8.12031 8.33569 8.40849 9.01724 9.59623 11.09756 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026272 B = 0.004663 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.535508 B = 6003.781529 C = 6882.320398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.027 0.973 4 C 0.020 3.980 5 C -0.524 4.524 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.685 5.685 14 C 0.060 3.940 15 C -0.118 4.118 16 C -0.114 4.114 17 C -0.089 4.089 18 C -0.150 4.150 19 C -0.183 4.183 20 C -0.185 4.185 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.035 0.965 24 H 0.026 0.974 25 H 0.020 0.980 26 H 0.261 0.739 27 H 0.353 0.647 28 H 0.060 0.940 29 H 0.020 0.980 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.243 4.255 18.339 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.319 5.319 14 C -0.070 4.070 15 C -0.155 4.155 16 C -0.152 4.152 17 C -0.127 4.127 18 C -0.168 4.168 19 C -0.220 4.220 20 C -0.222 4.222 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.174 0.826 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.833 3.900 18.320 18.820 hybrid contribution 1.864 0.660 -0.338 2.006 sum 0.031 4.560 17.982 18.551 Atomic orbital electron populations 1.21789 0.96826 1.01256 0.99382 1.21603 0.93307 0.95820 0.91551 0.95461 1.19276 0.95363 0.96193 0.90864 1.21146 0.92275 1.34493 1.08332 0.93105 1.24990 0.98242 0.95187 0.95698 1.69951 1.35600 1.35540 1.11959 0.86693 0.85900 0.78149 0.77458 1.20209 1.21249 1.20369 1.60559 1.34633 1.32241 1.04471 1.21927 0.99414 0.94257 0.91433 1.21572 1.01523 0.98549 0.93903 1.21522 1.01034 0.98505 0.94113 1.21201 1.01525 0.97129 0.92798 1.22404 0.98517 1.01856 0.94042 1.23043 0.93547 1.00799 1.04621 1.22972 1.04271 0.99500 0.95478 0.93399 0.92692 0.94568 0.95609 0.96122 0.92895 0.82624 0.92159 0.96178 0.92187 0.91404 0.92136 0.92111 0.91595 0.91865 0.87944 0.88810 0.89125 0.89098 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.42 37.16 0.35 -2.15 16 2 C 0.09 1.86 2.59 -67.71 -0.18 1.68 16 3 H 0.03 0.60 7.80 -51.93 -0.40 0.20 16 4 C 0.02 0.53 4.57 -27.89 -0.13 0.40 16 5 C -0.52 -14.61 8.12 -34.44 -0.28 -14.88 16 6 H 0.05 1.38 7.49 -52.48 -0.39 0.98 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.69 -13.58 6.31 -106.73 -0.67 -14.25 16 14 C 0.06 0.97 5.48 -3.83 -0.02 0.95 16 15 C -0.12 -1.61 5.47 -26.73 -0.15 -1.75 16 16 C -0.11 -1.28 5.17 -26.73 -0.14 -1.42 16 17 C -0.09 -0.90 5.49 -26.73 -0.15 -1.05 16 18 C -0.15 -1.39 5.73 -90.61 -0.52 -1.91 16 19 C -0.18 -1.59 10.18 -26.69 -0.27 -1.86 16 20 C -0.19 -1.54 10.26 -26.69 -0.27 -1.82 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.35 7.57 7.21 -39.29 -0.28 7.29 16 28 H 0.06 0.94 7.44 -51.93 -0.39 0.56 16 29 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.66 7.88 -51.93 -0.41 0.25 16 36 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.09 0.82 8.03 -51.93 -0.42 0.40 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 323.84 15.07 4.88 4.88 Total: -1.00 -28.86 323.84 -9.65 -38.51 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.73 Total: 2.51 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -1.85 Total: -22.19 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.06 Total: -40.26 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.86 -9.65 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716367067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.230 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds