Wall clock time and date at job start Mon Mar 30 2020 02:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46637 * 2 1 4 4 C 1.52993 * 109.47185 * 240.00247 * 2 1 3 5 5 C 1.50694 * 109.47318 * 175.00206 * 4 2 1 6 6 H 1.08004 * 119.99752 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00538 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99509 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00350 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47427 * 59.99615 * 9 7 5 11 11 H 1.48504 * 109.46995 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47008 * 299.99570 * 9 7 5 13 13 N 1.46900 * 109.47073 * 119.99707 * 2 1 3 14 14 C 1.46894 * 111.00559 * 275.00312 * 13 2 1 15 15 C 1.52997 * 109.47515 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46886 * 180.02562 * 17 16 15 19 19 C 1.53002 * 117.49654 * 243.73967 * 18 17 16 20 20 C 1.53012 * 117.49602 * 175.08431 * 18 17 16 21 21 H 1.08999 * 109.46772 * 60.00023 * 1 2 3 22 22 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47007 * 299.99951 * 1 2 3 24 24 H 1.09004 * 109.46941 * 294.99610 * 4 2 1 25 25 H 1.09004 * 109.47319 * 54.99733 * 4 2 1 26 26 H 0.97000 * 120.00055 * 179.97438 * 8 7 5 27 27 H 1.00899 * 110.99900 * 151.04363 * 13 2 1 28 28 H 1.09002 * 109.47104 * 59.99767 * 14 13 2 29 29 H 1.08998 * 109.46828 * 300.00600 * 14 13 2 30 30 H 1.09002 * 109.47153 * 59.99762 * 15 14 13 31 31 H 1.09001 * 109.46832 * 299.99953 * 15 14 13 32 32 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 33 33 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 34 34 H 1.09001 * 109.47109 * 299.99380 * 17 16 15 35 35 H 1.09002 * 109.47508 * 59.99571 * 17 16 15 36 36 H 1.08997 * 115.55341 * 29.41508 * 18 17 16 37 37 H 1.09000 * 117.49888 * 0.02562 * 19 18 17 38 38 H 1.08997 * 117.49823 * 145.01961 * 19 18 17 39 39 H 1.08998 * 117.49442 * 214.98050 * 20 18 17 40 40 H 1.08998 * 117.49828 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5395 7 6 4.2305 -1.1934 -2.3577 8 7 3.5766 -1.8385 -3.2989 9 14 6.0921 -1.0611 -2.4367 10 1 6.6847 -1.6860 -1.2270 11 1 6.5872 -1.7622 -3.6486 12 1 6.4845 0.3699 -2.4973 13 7 2.0197 -0.6924 1.1995 14 6 2.0825 0.2225 2.3469 15 6 2.5962 -0.5329 3.5742 16 6 2.6610 0.4201 4.7694 17 6 3.1753 -0.3352 5.9966 18 6 3.2395 0.6175 7.1920 19 6 4.6170 0.9065 7.7919 20 6 3.6220 0.0235 8.5491 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.7517 -1.7715 -1.2055 25 1 1.6054 -0.2617 -2.1370 26 1 4.0610 -2.2453 -4.0344 27 1 2.9173 -1.1205 1.0288 28 1 1.0871 0.6163 2.5525 29 1 2.7588 1.0462 2.1182 30 1 3.5917 -0.9262 3.3683 31 1 1.9202 -1.3567 3.8030 32 1 3.3368 1.2442 4.5409 33 1 1.6654 0.8130 4.9752 34 1 2.4999 -1.1596 6.2253 35 1 4.1711 -0.7279 5.7906 36 1 2.5130 1.4301 7.1851 37 1 5.4775 0.4182 7.3346 38 1 4.7966 1.9091 8.1799 39 1 3.1475 0.4455 9.4350 40 1 3.8284 -1.0460 8.5902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716367067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:33 Heat of formation + Delta-G solvation = -31.766770 kcal Electronic energy + Delta-G solvation = -15159.505702 eV Core-core repulsion = 12779.703558 eV Total energy + Delta-G solvation = -2379.802144 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.88117 -38.26346 -35.72861 -34.47324 -31.99339 -29.31434 -28.50795 -25.25338 -23.88503 -23.20099 -22.00657 -21.17255 -20.96052 -18.52243 -17.04736 -16.58342 -16.51642 -15.98809 -15.73565 -15.19492 -14.82685 -14.24681 -13.77580 -13.64533 -13.34625 -13.28031 -12.97101 -12.74416 -12.61489 -12.46928 -12.37851 -12.32599 -12.06027 -11.94159 -11.77223 -11.46608 -11.25760 -11.04020 -10.89313 -10.69173 -10.57687 -9.17769 -8.20076 -6.31117 1.39205 1.41457 1.49352 2.39792 2.93690 3.11084 3.40020 3.80221 4.03331 4.06298 4.14434 4.26636 4.29951 4.35934 4.53021 4.60441 4.67293 4.72678 4.77427 4.80671 4.93581 4.97748 5.02058 5.06984 5.12669 5.15827 5.21265 5.27829 5.33001 5.35915 5.46067 5.49708 5.52012 5.58388 5.83260 6.20231 6.44084 6.66153 6.83846 7.37686 8.91499 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026272 B = 0.004663 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.535508 B = 6003.781529 C = 6882.320398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.093 3.907 3 H 0.022 0.978 4 C 0.027 3.973 5 C -0.537 4.537 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.270 1.270 13 N -0.689 5.689 14 C 0.060 3.940 15 C -0.110 4.110 16 C -0.106 4.106 17 C -0.085 4.085 18 C -0.159 4.159 19 C -0.187 4.187 20 C -0.181 4.181 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.061 0.939 24 H -0.003 1.003 25 H -0.006 1.006 26 H 0.264 0.736 27 H 0.341 0.659 28 H 0.072 0.928 29 H 0.014 0.986 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.686 5.006 20.083 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.016 4.016 3 H 0.040 0.960 4 C -0.010 4.010 5 C -0.575 4.575 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.195 1.195 13 N -0.321 5.321 14 C -0.069 4.069 15 C -0.148 4.148 16 C -0.144 4.144 17 C -0.123 4.123 18 C -0.177 4.177 19 C -0.224 4.224 20 C -0.218 4.218 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.016 0.984 25 H 0.013 0.987 26 H 0.072 0.928 27 H 0.160 0.840 28 H 0.090 0.910 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.288 4.663 20.087 20.661 hybrid contribution 1.654 0.425 -0.877 1.919 sum 0.366 5.088 19.210 19.876 Atomic orbital electron populations 1.21704 0.94443 1.01421 1.00926 1.21440 0.95204 0.94689 0.90303 0.96013 1.19139 0.94886 0.94722 0.92282 1.21491 0.93290 1.34286 1.08441 0.92587 1.25912 1.03511 0.94721 0.95266 1.70088 1.37710 1.36557 1.12698 0.85556 0.79563 0.78473 0.77782 1.19056 1.20902 1.19512 1.60622 1.33831 1.32961 1.04668 1.22031 1.00138 0.93763 0.90960 1.21503 1.00820 0.98774 0.93673 1.21444 1.01610 0.97869 0.93439 1.21137 1.01186 0.97268 0.92698 1.22390 0.99095 1.02057 0.94169 1.23111 0.93244 1.01385 1.04657 1.23049 1.03731 0.99647 0.95349 0.92893 0.93207 0.91980 0.98447 0.98718 0.92762 0.83999 0.90970 0.96730 0.93000 0.91399 0.92339 0.91216 0.91421 0.92364 0.87537 0.89101 0.88320 0.87996 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.42 71.98 0.68 -3.91 16 2 C 0.09 4.00 2.59 44.92 0.12 4.11 16 3 H 0.02 0.96 7.80 -2.39 -0.02 0.94 16 4 C 0.03 1.45 4.57 29.84 0.14 1.58 16 5 C -0.54 -30.27 8.12 25.60 0.21 -30.06 16 6 H 0.06 3.03 7.49 -2.91 -0.02 3.01 16 7 C 0.00 0.24 5.46 84.66 0.46 0.70 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 9 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 N -0.69 -26.96 6.31 -491.59 -3.10 -30.06 16 14 C 0.06 1.88 5.48 86.30 0.47 2.36 16 15 C -0.11 -2.85 5.47 30.59 0.17 -2.68 16 16 C -0.11 -2.18 5.17 30.59 0.16 -2.03 16 17 C -0.09 -1.59 5.49 30.59 0.17 -1.42 16 18 C -0.16 -2.64 5.73 -10.79 -0.06 -2.70 16 19 C -0.19 -2.92 10.18 30.62 0.31 -2.61 16 20 C -0.18 -2.65 10.26 30.62 0.31 -2.34 16 21 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.06 1.91 7.45 -2.39 -0.02 1.90 16 24 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 25 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.34 14.68 7.21 -89.70 -0.65 14.04 16 28 H 0.07 2.09 7.44 -2.39 -0.02 2.07 16 29 H 0.01 0.47 8.05 -2.39 -0.02 0.45 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.13 7.88 -2.39 -0.02 1.11 16 36 H 0.11 1.68 8.08 -2.39 -0.02 1.66 16 37 H 0.09 1.46 8.03 -2.39 -0.02 1.44 16 38 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -61.43 323.84 2.66 -58.77 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.32 Total: 20.55 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 3.13 Total: -38.99 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -2.82 Total: -86.58 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -61.43 2.66 -58.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716367067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.005 kcal (2) G-P(sol) polarization free energy of solvation -61.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds