Wall clock time and date at job start Mon Mar 30 2020 02:50:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08997 * 109.46637 * 2 1
4 4 C 1.52993 * 109.47185 * 240.00247 * 2 1 3
5 5 C 1.50694 * 109.47318 * 175.00206 * 4 2 1
6 6 H 1.08004 * 119.99752 * 359.97438 * 5 4 2
7 7 C 1.37880 * 120.00538 * 179.97438 * 5 4 2
8 8 N 1.31511 * 119.99509 * 359.97438 * 7 5 4
9 9 Si 1.86797 * 120.00350 * 179.97438 * 7 5 4
10 10 H 1.48498 * 109.47427 * 59.99615 * 9 7 5
11 11 H 1.48504 * 109.46995 * 179.97438 * 9 7 5
12 12 H 1.48506 * 109.47008 * 299.99570 * 9 7 5
13 13 N 1.46900 * 109.47073 * 119.99707 * 2 1 3
14 14 C 1.46894 * 111.00559 * 275.00312 * 13 2 1
15 15 C 1.52997 * 109.47515 * 180.02562 * 14 13 2
16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13
17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14
18 18 C 1.53000 * 109.46886 * 180.02562 * 17 16 15
19 19 C 1.53002 * 117.49654 * 243.73967 * 18 17 16
20 20 C 1.53012 * 117.49602 * 175.08431 * 18 17 16
21 21 H 1.08999 * 109.46772 * 60.00023 * 1 2 3
22 22 H 1.08997 * 109.47152 * 180.02562 * 1 2 3
23 23 H 1.08994 * 109.47007 * 299.99951 * 1 2 3
24 24 H 1.09004 * 109.46941 * 294.99610 * 4 2 1
25 25 H 1.09004 * 109.47319 * 54.99733 * 4 2 1
26 26 H 0.97000 * 120.00055 * 179.97438 * 8 7 5
27 27 H 1.00899 * 110.99900 * 151.04363 * 13 2 1
28 28 H 1.09002 * 109.47104 * 59.99767 * 14 13 2
29 29 H 1.08998 * 109.46828 * 300.00600 * 14 13 2
30 30 H 1.09002 * 109.47153 * 59.99762 * 15 14 13
31 31 H 1.09001 * 109.46832 * 299.99953 * 15 14 13
32 32 H 1.09001 * 109.47194 * 299.99650 * 16 15 14
33 33 H 1.08992 * 109.47399 * 59.99823 * 16 15 14
34 34 H 1.09001 * 109.47109 * 299.99380 * 17 16 15
35 35 H 1.09002 * 109.47508 * 59.99571 * 17 16 15
36 36 H 1.08997 * 115.55341 * 29.41508 * 18 17 16
37 37 H 1.09000 * 117.49888 * 0.02562 * 19 18 17
38 38 H 1.08997 * 117.49823 * 145.01961 * 19 18 17
39 39 H 1.08998 * 117.49442 * 214.98050 * 20 18 17
40 40 H 1.08998 * 117.49828 * 0.02562 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7212 -1.2492
5 6 3.5419 -0.6149 -1.3127
6 1 4.0789 -0.0855 -0.5395
7 6 4.2305 -1.1934 -2.3577
8 7 3.5766 -1.8385 -3.2989
9 14 6.0921 -1.0611 -2.4367
10 1 6.6847 -1.6860 -1.2270
11 1 6.5872 -1.7622 -3.6486
12 1 6.4845 0.3699 -2.4973
13 7 2.0197 -0.6924 1.1995
14 6 2.0825 0.2225 2.3469
15 6 2.5962 -0.5329 3.5742
16 6 2.6610 0.4201 4.7694
17 6 3.1753 -0.3352 5.9966
18 6 3.2395 0.6175 7.1920
19 6 4.6170 0.9065 7.7919
20 6 3.6220 0.0235 8.5491
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3633 -1.0276 0.0005
23 1 -0.3633 0.5138 0.8899
24 1 1.7517 -1.7715 -1.2055
25 1 1.6054 -0.2617 -2.1370
26 1 4.0610 -2.2453 -4.0344
27 1 2.9173 -1.1205 1.0288
28 1 1.0871 0.6163 2.5525
29 1 2.7588 1.0462 2.1182
30 1 3.5917 -0.9262 3.3683
31 1 1.9202 -1.3567 3.8030
32 1 3.3368 1.2442 4.5409
33 1 1.6654 0.8130 4.9752
34 1 2.4999 -1.1596 6.2253
35 1 4.1711 -0.7279 5.7906
36 1 2.5130 1.4301 7.1851
37 1 5.4775 0.4182 7.3346
38 1 4.7966 1.9091 8.1799
39 1 3.1475 0.4455 9.4350
40 1 3.8284 -1.0460 8.5902
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000716367067.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:50:33
Heat of formation + Delta-G solvation = -31.766770 kcal
Electronic energy + Delta-G solvation = -15159.505702 eV
Core-core repulsion = 12779.703558 eV
Total energy + Delta-G solvation = -2379.802144 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-38.88117 -38.26346 -35.72861 -34.47324 -31.99339 -29.31434 -28.50795 -25.25338
-23.88503 -23.20099 -22.00657 -21.17255 -20.96052 -18.52243 -17.04736 -16.58342
-16.51642 -15.98809 -15.73565 -15.19492 -14.82685 -14.24681 -13.77580 -13.64533
-13.34625 -13.28031 -12.97101 -12.74416 -12.61489 -12.46928 -12.37851 -12.32599
-12.06027 -11.94159 -11.77223 -11.46608 -11.25760 -11.04020 -10.89313 -10.69173
-10.57687 -9.17769 -8.20076 -6.31117 1.39205 1.41457 1.49352 2.39792
2.93690 3.11084 3.40020 3.80221 4.03331 4.06298 4.14434 4.26636
4.29951 4.35934 4.53021 4.60441 4.67293 4.72678 4.77427 4.80671
4.93581 4.97748 5.02058 5.06984 5.12669 5.15827 5.21265 5.27829
5.33001 5.35915 5.46067 5.49708 5.52012 5.58388 5.83260 6.20231
6.44084 6.66153 6.83846 7.37686 8.91499
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.026272 B = 0.004663 C = 0.004067
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1065.535508 B = 6003.781529 C = 6882.320398
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.093 3.907
3 H 0.022 0.978
4 C 0.027 3.973
5 C -0.537 4.537
6 H 0.056 0.944
7 C 0.004 3.996
8 N -0.931 5.931
9 Si 0.962 3.038
10 H -0.266 1.266
11 H -0.284 1.284
12 H -0.270 1.270
13 N -0.689 5.689
14 C 0.060 3.940
15 C -0.110 4.110
16 C -0.106 4.106
17 C -0.085 4.085
18 C -0.159 4.159
19 C -0.187 4.187
20 C -0.181 4.181
21 H 0.052 0.948
22 H 0.049 0.951
23 H 0.061 0.939
24 H -0.003 1.003
25 H -0.006 1.006
26 H 0.264 0.736
27 H 0.341 0.659
28 H 0.072 0.928
29 H 0.014 0.986
30 H 0.051 0.949
31 H 0.067 0.933
32 H 0.058 0.942
33 H 0.069 0.931
34 H 0.067 0.933
35 H 0.058 0.942
36 H 0.107 0.893
37 H 0.090 0.910
38 H 0.098 0.902
39 H 0.102 0.898
40 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.686 5.006 20.083 20.709
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.016 4.016
3 H 0.040 0.960
4 C -0.010 4.010
5 C -0.575 4.575
6 H 0.074 0.926
7 C -0.194 4.194
8 N -0.571 5.571
9 Si 0.786 3.214
10 H -0.191 1.191
11 H -0.209 1.209
12 H -0.195 1.195
13 N -0.321 5.321
14 C -0.069 4.069
15 C -0.148 4.148
16 C -0.144 4.144
17 C -0.123 4.123
18 C -0.177 4.177
19 C -0.224 4.224
20 C -0.218 4.218
21 H 0.071 0.929
22 H 0.068 0.932
23 H 0.080 0.920
24 H 0.016 0.984
25 H 0.013 0.987
26 H 0.072 0.928
27 H 0.160 0.840
28 H 0.090 0.910
29 H 0.033 0.967
30 H 0.070 0.930
31 H 0.086 0.914
32 H 0.077 0.923
33 H 0.088 0.912
34 H 0.086 0.914
35 H 0.076 0.924
36 H 0.125 0.875
37 H 0.109 0.891
38 H 0.117 0.883
39 H 0.120 0.880
40 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -1.288 4.663 20.087 20.661
hybrid contribution 1.654 0.425 -0.877 1.919
sum 0.366 5.088 19.210 19.876
Atomic orbital electron populations
1.21704 0.94443 1.01421 1.00926 1.21440 0.95204 0.94689 0.90303
0.96013 1.19139 0.94886 0.94722 0.92282 1.21491 0.93290 1.34286
1.08441 0.92587 1.25912 1.03511 0.94721 0.95266 1.70088 1.37710
1.36557 1.12698 0.85556 0.79563 0.78473 0.77782 1.19056 1.20902
1.19512 1.60622 1.33831 1.32961 1.04668 1.22031 1.00138 0.93763
0.90960 1.21503 1.00820 0.98774 0.93673 1.21444 1.01610 0.97869
0.93439 1.21137 1.01186 0.97268 0.92698 1.22390 0.99095 1.02057
0.94169 1.23111 0.93244 1.01385 1.04657 1.23049 1.03731 0.99647
0.95349 0.92893 0.93207 0.91980 0.98447 0.98718 0.92762 0.83999
0.90970 0.96730 0.93000 0.91399 0.92339 0.91216 0.91421 0.92364
0.87537 0.89101 0.88320 0.87996 0.88745
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.59 9.42 71.98 0.68 -3.91 16
2 C 0.09 4.00 2.59 44.92 0.12 4.11 16
3 H 0.02 0.96 7.80 -2.39 -0.02 0.94 16
4 C 0.03 1.45 4.57 29.84 0.14 1.58 16
5 C -0.54 -30.27 8.12 25.60 0.21 -30.06 16
6 H 0.06 3.03 7.49 -2.91 -0.02 3.01 16
7 C 0.00 0.24 5.46 84.66 0.46 0.70 16
8 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16
9 Si 0.96 44.21 29.54 68.60 2.03 46.24 16
10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16
11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16
12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
13 N -0.69 -26.96 6.31 -491.59 -3.10 -30.06 16
14 C 0.06 1.88 5.48 86.30 0.47 2.36 16
15 C -0.11 -2.85 5.47 30.59 0.17 -2.68 16
16 C -0.11 -2.18 5.17 30.59 0.16 -2.03 16
17 C -0.09 -1.59 5.49 30.59 0.17 -1.42 16
18 C -0.16 -2.64 5.73 -10.79 -0.06 -2.70 16
19 C -0.19 -2.92 10.18 30.62 0.31 -2.61 16
20 C -0.18 -2.65 10.26 30.62 0.31 -2.34 16
21 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16
22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16
23 H 0.06 1.91 7.45 -2.39 -0.02 1.90 16
24 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16
25 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16
26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16
27 H 0.34 14.68 7.21 -89.70 -0.65 14.04 16
28 H 0.07 2.09 7.44 -2.39 -0.02 2.07 16
29 H 0.01 0.47 8.05 -2.39 -0.02 0.45 16
30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16
31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16
32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16
33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
35 H 0.06 1.13 7.88 -2.39 -0.02 1.11 16
36 H 0.11 1.68 8.08 -2.39 -0.02 1.66 16
37 H 0.09 1.46 8.03 -2.39 -0.02 1.44 16
38 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16
39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16
40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16
Total: -1.00 -61.43 323.84 2.66 -58.77
By element:
Atomic # 1 Polarization: 20.23 SS G_CDS: 0.32 Total: 20.55 kcal
Atomic # 6 Polarization: -42.12 SS G_CDS: 3.13 Total: -38.99 kcal
Atomic # 7 Polarization: -83.76 SS G_CDS: -2.82 Total: -86.58 kcal
Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal
Total: -61.43 2.66 -58.77 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000716367067.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.005 kcal
(2) G-P(sol) polarization free energy of solvation -61.431 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.426 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.772 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.767 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds