Wall clock time and date at job start Mon Mar 30 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46722 * 2 1 4 4 C 1.50701 * 109.46758 * 240.00091 * 2 1 3 5 5 H 1.08001 * 120.00055 * 239.99329 * 4 2 1 6 6 C 1.37878 * 120.00107 * 60.00244 * 4 2 1 7 7 N 1.31512 * 120.00174 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99861 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47105 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47082 * 119.99914 * 8 6 4 11 11 H 1.48502 * 109.47102 * 240.00104 * 8 6 4 12 12 N 1.46896 * 109.46809 * 119.99881 * 2 1 3 13 13 C 1.46904 * 111.00224 * 55.90814 * 12 2 1 14 14 C 1.46893 * 111.00207 * 291.94855 * 12 2 1 15 15 C 1.52997 * 109.46932 * 84.27218 * 14 12 2 16 16 C 1.53003 * 109.47574 * 324.27012 * 14 12 2 17 17 C 1.52999 * 109.47498 * 179.97438 * 16 14 12 18 18 C 1.53000 * 109.47043 * 60.00025 * 17 16 14 19 19 C 1.53003 * 109.46954 * 300.00308 * 18 17 16 20 20 C 1.52999 * 109.47498 * 59.99970 * 19 18 17 21 21 H 1.08998 * 109.47027 * 197.78297 * 1 2 3 22 22 H 1.08996 * 109.46876 * 317.78804 * 1 2 3 23 23 H 1.09003 * 109.46798 * 77.78551 * 1 2 3 24 24 H 0.97000 * 120.00012 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.46634 * 296.04582 * 13 12 2 26 26 H 1.09002 * 109.46832 * 56.04278 * 13 12 2 27 27 H 1.08990 * 109.47311 * 176.04124 * 13 12 2 28 28 H 1.09001 * 109.47289 * 297.32407 * 15 14 12 29 29 H 1.09000 * 109.47251 * 57.32974 * 15 14 12 30 30 H 1.09007 * 109.47308 * 177.32629 * 15 14 12 31 31 H 1.08999 * 109.46976 * 300.00189 * 16 14 12 32 32 H 1.08998 * 109.46603 * 59.99481 * 16 14 12 33 33 H 1.08996 * 109.47012 * 179.97438 * 17 16 14 34 34 H 1.08995 * 109.46900 * 300.00488 * 17 16 14 35 35 H 1.08991 * 109.47054 * 180.02562 * 18 17 16 36 36 H 1.08999 * 109.47027 * 59.99969 * 18 17 16 37 37 H 1.08999 * 109.46976 * 299.99691 * 19 18 17 38 38 H 1.09002 * 109.46928 * 180.02562 * 19 18 17 39 39 H 1.08996 * 109.47012 * 180.02562 * 20 19 18 40 40 H 1.09008 * 109.47100 * 59.99709 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1482 -2.2856 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0196 -0.6925 1.1994 13 6 1.4703 -2.0524 1.2834 14 6 1.7118 0.0755 2.4132 15 6 0.2869 -0.2427 2.8703 16 6 1.8293 1.5714 2.1139 17 6 1.5081 2.3713 3.3780 18 6 2.4946 1.9936 4.4849 19 6 2.3771 0.4978 4.7842 20 6 2.6983 -0.3021 3.5201 21 1 -0.3633 -0.9785 0.3139 22 1 -0.3633 0.7611 0.6904 23 1 -0.3633 0.2174 -1.0044 24 1 0.7088 1.1613 -3.4844 25 1 0.3877 -2.0003 1.3988 26 1 1.7127 -2.5990 0.3720 27 1 1.9030 -2.5667 2.1414 28 1 -0.4198 0.0700 2.1016 29 1 0.1901 -1.3154 3.0381 30 1 0.0749 0.2905 3.7972 31 1 2.8445 1.7981 1.7882 32 1 1.1263 1.8404 1.3256 33 1 1.5923 3.4368 3.1648 34 1 0.4929 2.1444 3.7032 35 1 2.2654 2.5631 5.3855 36 1 3.5099 2.2204 4.1596 37 1 1.3617 0.2710 5.1095 38 1 3.0795 0.2288 5.5731 39 1 2.6141 -1.3677 3.7333 40 1 3.7137 -0.0753 3.1948 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720344983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:01 Heat of formation + Delta-G solvation = 4.630083 kcal Electronic energy + Delta-G solvation = -17279.913188 eV Core-core repulsion = 14901.689330 eV Total energy + Delta-G solvation = -2378.223858 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.71512 -35.88574 -32.78064 -30.68854 -29.92765 -28.20224 -27.14317 -24.97353 -24.36019 -22.10618 -21.08875 -19.51483 -17.53589 -16.23407 -15.45778 -14.84583 -14.38106 -14.21060 -13.87962 -13.52803 -13.02695 -12.98141 -12.17719 -11.94079 -11.78781 -11.64556 -11.25810 -11.09901 -10.91916 -10.77489 -10.62426 -10.57314 -10.42415 -10.34093 -10.12086 -9.94006 -9.76800 -9.67295 -9.13895 -8.67545 -8.25162 -6.99389 -5.95306 -3.98617 3.32420 3.40409 3.45193 4.45530 4.88888 5.09890 5.14374 5.35705 5.44556 5.61440 5.68235 5.77876 5.80776 5.93625 5.94918 6.11049 6.16288 6.22706 6.26471 6.36706 6.43377 6.46717 6.53758 6.58801 6.64280 6.71770 6.73545 6.83896 6.95519 7.02294 7.08801 7.25675 7.59378 7.82555 7.93377 8.24392 8.51424 8.73141 9.08801 9.65880 11.10891 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042458 B = 0.008050 C = 0.007687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.312228 B = 3477.558465 C = 3641.538400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.204 3.796 3 H 0.049 0.951 4 C -0.495 4.495 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.894 5.894 8 Si 0.893 3.107 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.527 5.527 13 C 0.030 3.970 14 C 0.115 3.885 15 C -0.194 4.194 16 C -0.114 4.114 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.099 4.099 21 H 0.028 0.972 22 H 0.018 0.982 23 H 0.085 0.915 24 H 0.258 0.742 25 H 0.025 0.975 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 0.325 11.724 11.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.098 3.902 3 H 0.067 0.933 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.534 5.534 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.250 5.250 13 C -0.118 4.118 14 C 0.025 3.975 15 C -0.252 4.252 16 C -0.152 4.152 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.137 4.137 21 H 0.047 0.953 22 H 0.037 0.963 23 H 0.104 0.896 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.586 0.388 11.525 11.546 hybrid contribution -0.655 -0.388 -0.843 1.136 sum -0.069 0.000 10.682 10.682 Atomic orbital electron populations 1.22679 1.01205 0.97081 1.02681 1.19423 0.89587 0.95237 0.85948 0.93319 1.21233 1.29966 1.12319 0.89851 0.92111 1.24919 0.95434 0.95233 0.98897 1.69914 1.37266 1.23149 1.23109 0.86521 0.78511 0.79701 0.83148 1.19825 1.21278 1.21154 1.62505 1.58730 1.01773 1.01949 1.22315 0.96980 0.91753 1.00775 1.20856 0.92218 0.93344 0.91130 1.22984 0.99315 1.01142 1.01746 1.21820 1.02659 0.93834 0.96872 1.21605 0.99060 0.99257 0.95827 1.21517 0.99833 0.96033 0.98033 1.21589 1.01127 0.95320 0.97641 1.21496 0.99728 0.98740 0.93775 0.95299 0.96303 0.89620 0.93205 0.95673 0.91244 0.94214 0.90802 0.92929 0.93162 0.91662 0.90482 0.92579 0.92233 0.92944 0.92183 0.92181 0.92796 0.92770 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.24 7.25 37.16 0.27 -3.97 16 2 C 0.20 5.05 1.80 -68.86 -0.12 4.93 16 3 H 0.05 1.31 5.74 -51.93 -0.30 1.02 16 4 C -0.49 -13.58 7.90 -34.44 -0.27 -13.85 16 5 H 0.06 1.69 6.99 -52.49 -0.37 1.32 16 6 C 0.06 1.53 5.20 -17.82 -0.09 1.44 16 7 N -0.89 -25.47 11.36 55.43 0.63 -24.84 16 8 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.53 -11.30 4.57 -220.62 -1.01 -12.31 16 13 C 0.03 0.60 7.71 60.07 0.46 1.06 16 14 C 0.11 2.06 0.45 -131.60 -0.06 2.00 16 15 C -0.19 -3.25 6.46 37.16 0.24 -3.01 16 16 C -0.11 -2.06 3.50 -26.73 -0.09 -2.15 16 17 C -0.12 -1.73 5.65 -26.73 -0.15 -1.88 16 18 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 19 C -0.12 -1.55 5.65 -26.73 -0.15 -1.70 16 20 C -0.10 -1.56 4.90 -26.73 -0.13 -1.69 16 21 H 0.03 0.65 5.36 -51.93 -0.28 0.37 16 22 H 0.02 0.41 4.91 -51.93 -0.26 0.15 16 23 H 0.09 2.31 5.81 -51.93 -0.30 2.00 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.03 0.49 4.28 -51.93 -0.22 0.27 16 26 H 0.07 1.49 6.62 -51.93 -0.34 1.15 16 27 H 0.04 0.70 7.14 -51.93 -0.37 0.33 16 28 H 0.07 1.36 4.33 -51.93 -0.22 1.13 16 29 H 0.05 0.86 6.22 -51.93 -0.32 0.54 16 30 H 0.05 0.75 4.81 -51.92 -0.25 0.50 16 31 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 32 H 0.08 1.57 5.00 -51.93 -0.26 1.31 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.84 6.49 -51.93 -0.34 0.50 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.77 6.37 -51.93 -0.33 0.44 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.84 7.17 -51.93 -0.37 0.47 16 40 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 LS Contribution 273.51 15.07 4.12 4.12 Total: -1.00 -27.60 273.51 -7.74 -35.34 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.20 Total: 1.67 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -0.26 Total: -20.48 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.38 Total: -37.15 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.60 -7.74 -35.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720344983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.974 kcal (2) G-P(sol) polarization free energy of solvation -27.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds