Wall clock time and date at job start Mon Mar 30 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46722 * 2 1 4 4 C 1.50701 * 109.46758 * 240.00091 * 2 1 3 5 5 H 1.08001 * 120.00055 * 239.99329 * 4 2 1 6 6 C 1.37878 * 120.00107 * 60.00244 * 4 2 1 7 7 N 1.31512 * 120.00174 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99861 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47105 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47082 * 119.99914 * 8 6 4 11 11 H 1.48502 * 109.47102 * 240.00104 * 8 6 4 12 12 N 1.46896 * 109.46809 * 119.99881 * 2 1 3 13 13 C 1.46904 * 111.00224 * 55.90814 * 12 2 1 14 14 C 1.46893 * 111.00207 * 291.94855 * 12 2 1 15 15 C 1.52997 * 109.46932 * 84.27218 * 14 12 2 16 16 C 1.53003 * 109.47574 * 324.27012 * 14 12 2 17 17 C 1.52999 * 109.47498 * 179.97438 * 16 14 12 18 18 C 1.53000 * 109.47043 * 60.00025 * 17 16 14 19 19 C 1.53003 * 109.46954 * 300.00308 * 18 17 16 20 20 C 1.52999 * 109.47498 * 59.99970 * 19 18 17 21 21 H 1.08998 * 109.47027 * 197.78297 * 1 2 3 22 22 H 1.08996 * 109.46876 * 317.78804 * 1 2 3 23 23 H 1.09003 * 109.46798 * 77.78551 * 1 2 3 24 24 H 0.97000 * 120.00012 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.46634 * 296.04582 * 13 12 2 26 26 H 1.09002 * 109.46832 * 56.04278 * 13 12 2 27 27 H 1.08990 * 109.47311 * 176.04124 * 13 12 2 28 28 H 1.09001 * 109.47289 * 297.32407 * 15 14 12 29 29 H 1.09000 * 109.47251 * 57.32974 * 15 14 12 30 30 H 1.09007 * 109.47308 * 177.32629 * 15 14 12 31 31 H 1.08999 * 109.46976 * 300.00189 * 16 14 12 32 32 H 1.08998 * 109.46603 * 59.99481 * 16 14 12 33 33 H 1.08996 * 109.47012 * 179.97438 * 17 16 14 34 34 H 1.08995 * 109.46900 * 300.00488 * 17 16 14 35 35 H 1.08991 * 109.47054 * 180.02562 * 18 17 16 36 36 H 1.08999 * 109.47027 * 59.99969 * 18 17 16 37 37 H 1.08999 * 109.46976 * 299.99691 * 19 18 17 38 38 H 1.09002 * 109.46928 * 180.02562 * 19 18 17 39 39 H 1.08996 * 109.47012 * 180.02562 * 20 19 18 40 40 H 1.09008 * 109.47100 * 59.99709 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1482 -2.2856 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0196 -0.6925 1.1994 13 6 1.4703 -2.0524 1.2834 14 6 1.7118 0.0755 2.4132 15 6 0.2869 -0.2427 2.8703 16 6 1.8293 1.5714 2.1139 17 6 1.5081 2.3713 3.3780 18 6 2.4946 1.9936 4.4849 19 6 2.3771 0.4978 4.7842 20 6 2.6983 -0.3021 3.5201 21 1 -0.3633 -0.9785 0.3139 22 1 -0.3633 0.7611 0.6904 23 1 -0.3633 0.2174 -1.0044 24 1 0.7088 1.1613 -3.4844 25 1 0.3877 -2.0003 1.3988 26 1 1.7127 -2.5990 0.3720 27 1 1.9030 -2.5667 2.1414 28 1 -0.4198 0.0700 2.1016 29 1 0.1901 -1.3154 3.0381 30 1 0.0749 0.2905 3.7972 31 1 2.8445 1.7981 1.7882 32 1 1.1263 1.8404 1.3256 33 1 1.5923 3.4368 3.1648 34 1 0.4929 2.1444 3.7032 35 1 2.2654 2.5631 5.3855 36 1 3.5099 2.2204 4.1596 37 1 1.3617 0.2710 5.1095 38 1 3.0795 0.2288 5.5731 39 1 2.6141 -1.3677 3.7333 40 1 3.7137 -0.0753 3.1948 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720344983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:01 Heat of formation + Delta-G solvation = -11.593648 kcal Electronic energy + Delta-G solvation = -17280.616702 eV Core-core repulsion = 14901.689330 eV Total energy + Delta-G solvation = -2378.927372 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18206 -37.40074 -34.71939 -32.10862 -31.38552 -29.91448 -28.61367 -27.02995 -25.87285 -23.41182 -22.54898 -21.09819 -18.97209 -18.17849 -17.10405 -16.68217 -15.86345 -15.73097 -15.30511 -14.97345 -14.54992 -14.38823 -13.81553 -13.40310 -13.35056 -13.16767 -12.93295 -12.63185 -12.61245 -12.40671 -12.27671 -12.16962 -11.98063 -11.92041 -11.77516 -11.66161 -11.10664 -10.97750 -10.72498 -10.62467 -10.27103 -8.68438 -8.07322 -6.17612 1.39786 1.41949 1.53412 2.43973 3.20819 3.41606 3.85701 3.96114 4.21647 4.35675 4.40793 4.48610 4.56834 4.61905 4.71507 4.74765 4.79695 4.84578 4.87548 4.94912 5.00820 5.06786 5.16971 5.20957 5.25111 5.30518 5.31564 5.37452 5.38454 5.49749 5.55725 5.65799 5.75680 5.80121 5.91694 6.30924 6.61508 6.92380 6.99811 7.51330 8.97723 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042458 B = 0.008050 C = 0.007687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.312228 B = 3477.558465 C = 3641.538400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.213 3.787 3 H 0.019 0.981 4 C -0.512 4.512 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.542 5.542 13 C 0.035 3.965 14 C 0.110 3.890 15 C -0.186 4.186 16 C -0.111 4.111 17 C -0.114 4.114 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.095 4.095 21 H 0.036 0.964 22 H 0.031 0.969 23 H 0.053 0.947 24 H 0.259 0.741 25 H 0.028 0.972 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 -0.147 13.660 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.106 3.894 3 H 0.037 0.963 4 C -0.551 4.551 5 H 0.069 0.931 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.265 5.265 13 C -0.113 4.113 14 C 0.020 3.980 15 C -0.244 4.244 16 C -0.149 4.149 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.133 4.133 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.653 -0.088 13.477 13.493 hybrid contribution -0.653 -0.222 -1.423 1.581 sum 0.000 -0.310 12.054 12.058 Atomic orbital electron populations 1.22468 1.00656 0.97793 1.00978 1.19117 0.89780 0.93677 0.86857 0.96294 1.21518 1.29990 1.12222 0.91366 0.93076 1.25649 0.95646 0.95930 1.01654 1.70038 1.38046 1.24224 1.23690 0.85559 0.78050 0.78646 0.79669 1.19464 1.20694 1.20833 1.62425 1.59173 1.02590 1.02290 1.22274 0.97281 0.90910 1.00818 1.21026 0.93947 0.92674 0.90355 1.22870 0.97577 1.01838 1.02139 1.21730 1.00388 0.94839 0.97923 1.21573 1.00067 0.99020 0.94541 1.21516 0.98976 0.96392 0.98250 1.21572 1.02297 0.94722 0.96481 1.21459 0.98107 0.99596 0.94150 0.94554 0.95038 0.92838 0.93173 0.95345 0.93437 0.91522 0.92794 0.92263 0.90661 0.93872 0.93731 0.91920 0.91384 0.90233 0.92637 0.91193 0.90594 0.92276 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.82 7.25 71.98 0.52 -7.29 16 2 C 0.21 10.85 1.80 44.17 0.08 10.93 16 3 H 0.02 1.09 5.74 -2.39 -0.01 1.07 16 4 C -0.51 -28.82 7.90 25.60 0.20 -28.62 16 5 H 0.05 2.91 6.99 -2.91 -0.02 2.89 16 6 C 0.01 0.51 5.20 84.66 0.44 0.95 16 7 N -0.92 -53.69 11.36 21.45 0.24 -53.45 16 8 Si 0.95 44.74 29.54 68.60 2.03 46.76 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 N -0.54 -23.36 4.57 -851.90 -3.89 -27.26 16 13 C 0.04 1.38 7.71 127.69 0.98 2.37 16 14 C 0.11 3.83 0.45 3.53 0.00 3.83 16 15 C -0.19 -5.87 6.46 71.98 0.46 -5.40 16 16 C -0.11 -4.02 3.50 30.59 0.11 -3.91 16 17 C -0.11 -3.08 5.65 30.59 0.17 -2.91 16 18 C -0.11 -2.56 5.92 30.60 0.18 -2.38 16 19 C -0.11 -2.52 5.65 30.59 0.17 -2.35 16 20 C -0.09 -2.78 4.90 30.59 0.15 -2.63 16 21 H 0.04 1.66 5.36 -2.39 -0.01 1.65 16 22 H 0.03 1.42 4.91 -2.39 -0.01 1.41 16 23 H 0.05 2.96 5.81 -2.39 -0.01 2.95 16 24 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 25 H 0.03 1.09 4.28 -2.39 -0.01 1.08 16 26 H 0.05 2.04 6.62 -2.39 -0.02 2.03 16 27 H 0.07 2.23 7.14 -2.39 -0.02 2.21 16 28 H 0.05 1.92 4.33 -2.39 -0.01 1.91 16 29 H 0.06 1.78 6.22 -2.39 -0.01 1.77 16 30 H 0.07 1.99 4.81 -2.38 -0.01 1.97 16 31 H 0.04 1.70 8.08 -2.39 -0.02 1.68 16 32 H 0.04 1.88 5.00 -2.39 -0.01 1.86 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 1.73 6.49 -2.39 -0.02 1.71 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.46 6.37 -2.39 -0.02 1.45 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.67 7.17 -2.39 -0.02 1.65 16 40 H 0.05 1.60 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -60.22 273.51 2.88 -57.35 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 1.02 Total: 14.01 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: 3.48 Total: -37.42 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -3.65 Total: -80.70 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -60.22 2.88 -57.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720344983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.756 kcal (2) G-P(sol) polarization free energy of solvation -60.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds