Wall clock time and date at job start Mon Mar 30 2020 02:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47826 * 2 1 4 4 C 1.53004 * 109.46910 * 239.99738 * 2 1 3 5 5 C 1.50705 * 109.47186 * 175.00040 * 4 2 1 6 6 H 1.08000 * 119.99936 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99802 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00565 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99697 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47094 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.46966 * 120.00501 * 9 7 5 12 12 H 1.48502 * 109.46669 * 240.00084 * 9 7 5 13 13 N 1.46901 * 109.47036 * 120.00444 * 2 1 3 14 14 C 1.46899 * 111.00391 * 37.93074 * 13 2 1 15 15 C 1.46902 * 110.99620 * 273.97872 * 13 2 1 16 16 C 1.53001 * 110.01827 * 62.64714 * 15 13 2 17 17 C 1.54270 * 110.03234 * 301.20426 * 15 13 2 18 18 C 1.54890 * 104.19793 * 217.10635 * 17 15 13 19 19 C 1.54889 * 102.74715 * 37.94480 * 18 17 15 20 20 C 1.53879 * 110.03129 * 184.04125 * 15 13 2 21 21 H 1.09003 * 109.46988 * 52.78073 * 1 2 3 22 22 H 1.08993 * 109.47724 * 172.78300 * 1 2 3 23 23 H 1.09004 * 109.47220 * 292.78313 * 1 2 3 24 24 H 1.08997 * 109.46752 * 55.00371 * 4 2 1 25 25 H 1.09000 * 109.47335 * 295.00639 * 4 2 1 26 26 H 0.96997 * 120.00100 * 180.02562 * 8 7 5 27 27 H 1.09001 * 109.47095 * 60.00114 * 14 13 2 28 28 H 1.08996 * 109.47392 * 180.02562 * 14 13 2 29 29 H 1.09001 * 109.47031 * 300.00801 * 14 13 2 30 30 H 1.09004 * 109.46442 * 49.73033 * 16 15 13 31 31 H 1.08999 * 109.47096 * 169.72692 * 16 15 13 32 32 H 1.08993 * 109.47198 * 289.73006 * 16 15 13 33 33 H 1.09002 * 110.48762 * 335.78587 * 17 15 13 34 34 H 1.09004 * 110.48516 * 98.42914 * 17 15 13 35 35 H 1.09001 * 110.75577 * 279.63033 * 18 17 15 36 36 H 1.08992 * 110.75451 * 156.25987 * 18 17 15 37 37 H 1.09004 * 110.48638 * 203.38069 * 19 18 17 38 38 H 1.08995 * 110.60267 * 80.79104 * 19 18 17 39 39 H 1.09000 * 110.03335 * 238.56602 * 20 15 13 40 40 H 1.08999 * 110.03329 * 359.95128 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0790 -0.0863 -0.5393 7 6 4.2303 -1.1937 -2.3578 8 7 3.5763 -1.8380 -3.2995 9 14 6.0921 -1.0626 -2.4362 10 1 6.5838 -0.2931 -1.2652 11 1 6.6854 -2.4237 -2.4181 12 1 6.4870 -0.3671 -3.6874 13 7 2.0196 -0.6926 1.1994 14 6 1.1753 -1.8512 1.5200 15 6 2.1053 0.2282 2.3408 16 6 0.7139 0.7599 2.6904 17 6 3.0509 1.3999 2.0047 18 6 3.7912 1.6843 3.3351 19 6 4.0089 0.2648 3.9153 20 6 2.7145 -0.4935 3.5557 21 1 -0.3633 0.6216 -0.8184 22 1 -0.3634 -1.0194 -0.1291 23 1 -0.3634 0.3980 0.9475 24 1 1.6053 -0.2618 -2.1369 25 1 1.7514 -1.7716 -1.2056 26 1 4.0607 -2.2455 -4.0345 27 1 1.1854 -2.5505 0.6840 28 1 1.5598 -2.3453 2.4121 29 1 0.1538 -1.5171 1.7017 30 1 0.0164 -0.0738 2.7721 31 1 0.7566 1.2923 3.6406 32 1 0.3776 1.4398 1.9078 33 1 3.7589 1.1083 1.2289 34 1 2.4792 2.2737 1.6918 35 1 3.1709 2.2833 4.0019 36 1 4.7459 2.1759 3.1484 37 1 4.1364 0.3102 4.9969 38 1 4.8718 -0.2115 3.4501 39 1 2.0192 -0.4642 4.3946 40 1 2.9457 -1.5272 3.2986 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720375474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:03 Heat of formation + Delta-G solvation = -2.842892 kcal Electronic energy + Delta-G solvation = -17059.755257 eV Core-core repulsion = 14681.207347 eV Total energy + Delta-G solvation = -2378.547911 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63102 -35.83078 -32.78811 -30.78561 -29.45840 -28.23568 -27.41162 -25.69821 -23.94071 -22.75582 -20.42196 -19.33980 -17.65168 -16.39324 -15.86378 -15.05696 -14.52738 -14.25149 -13.99460 -13.49125 -13.34576 -12.68813 -12.29378 -11.92289 -11.70378 -11.59722 -11.49462 -11.32691 -11.00443 -10.81990 -10.70452 -10.59093 -10.51935 -10.41138 -10.29060 -10.20253 -9.90115 -9.75726 -9.03573 -8.85463 -8.19947 -7.32234 -5.82360 -3.79248 3.41206 3.48583 3.53537 4.60045 4.62557 4.84110 4.99909 5.25437 5.54878 5.55445 5.59746 5.64562 5.79986 5.82779 5.84075 5.94433 5.99704 6.03943 6.09052 6.13684 6.15482 6.22919 6.27246 6.32319 6.43581 6.52867 6.54979 6.64657 6.69147 6.76336 6.84799 7.15315 7.64855 7.81651 8.02511 8.17938 8.20963 8.67267 9.26425 9.81672 11.29909 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025091 B = 0.009900 C = 0.008031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.670911 B = 2827.645773 C = 3485.810480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.085 3.915 3 H 0.068 0.932 4 C 0.034 3.966 5 C -0.483 4.483 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.500 5.500 14 C 0.022 3.978 15 C 0.105 3.895 16 C -0.178 4.178 17 C -0.113 4.113 18 C -0.122 4.122 19 C -0.119 4.119 20 C -0.113 4.113 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.255 0.745 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.022 0.978 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.923 4.636 13.130 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.023 4.023 3 H 0.086 0.914 4 C -0.003 4.003 5 C -0.521 4.521 6 H 0.078 0.922 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.223 5.223 14 C -0.127 4.127 15 C 0.015 3.985 16 C -0.237 4.237 17 C -0.151 4.151 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.151 4.151 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.410 4.357 12.865 14.004 hybrid contribution 0.129 0.210 -0.045 0.250 sum -3.281 4.567 12.820 13.999 Atomic orbital electron populations 1.22927 0.99735 1.01574 1.01246 1.21920 0.90130 0.98186 0.92023 0.91422 1.19121 0.96176 0.95312 0.89729 1.21203 0.91905 1.32455 1.06566 0.92238 1.25000 0.97805 0.96064 0.96132 1.69976 1.34960 1.37238 1.12458 0.86619 0.86765 0.77517 0.77575 1.19811 1.21406 1.21503 1.62472 1.50463 1.07083 1.02248 1.22439 0.94495 0.94517 1.01209 1.21709 0.93216 0.92458 0.91149 1.22803 0.98753 1.01068 1.01070 1.22525 0.98551 0.96269 0.97753 1.22446 0.99870 0.96679 0.97041 1.22285 0.98289 0.95820 0.99327 1.22262 0.96374 1.00369 0.96048 0.93226 0.92919 0.92428 0.96720 0.96585 0.93504 0.91259 0.92629 0.96019 0.92532 0.93204 0.91922 0.89208 0.92442 0.92333 0.91955 0.92617 0.91384 0.92676 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.45 7.53 37.15 0.28 -3.17 16 2 C 0.09 1.75 1.74 -67.71 -0.12 1.63 16 3 H 0.07 1.41 6.30 -51.93 -0.33 1.08 16 4 C 0.03 0.88 4.55 -27.88 -0.13 0.75 16 5 C -0.48 -13.62 8.84 -34.44 -0.30 -13.93 16 6 H 0.06 1.66 6.83 -52.49 -0.36 1.30 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.72 13.29 55.43 0.74 -26.98 16 9 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 N -0.50 -9.49 4.09 -217.94 -0.89 -10.38 16 14 C 0.02 0.37 7.74 60.06 0.46 0.84 16 15 C 0.10 1.66 0.55 -130.48 -0.07 1.58 16 16 C -0.18 -2.48 6.47 37.16 0.24 -2.23 16 17 C -0.11 -1.81 4.46 -25.07 -0.11 -1.92 16 18 C -0.12 -1.63 6.91 -24.74 -0.17 -1.80 16 19 C -0.12 -1.59 6.83 -25.07 -0.17 -1.76 16 20 C -0.11 -1.61 5.54 -25.61 -0.14 -1.75 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.05 0.93 6.93 -51.93 -0.36 0.57 16 23 H 0.06 0.89 3.92 -51.93 -0.20 0.69 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.02 0.44 7.16 -51.93 -0.37 0.07 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.07 1.32 7.17 -51.93 -0.37 0.95 16 28 H 0.06 0.86 6.22 -51.93 -0.32 0.54 16 29 H 0.02 0.34 4.69 -51.93 -0.24 0.10 16 30 H 0.06 0.77 5.68 -51.93 -0.29 0.48 16 31 H 0.05 0.62 8.05 -51.93 -0.42 0.20 16 32 H 0.06 0.89 5.96 -51.93 -0.31 0.58 16 33 H 0.09 1.72 6.99 -51.93 -0.36 1.36 16 34 H 0.06 0.87 7.55 -51.93 -0.39 0.48 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.70 7.63 -51.93 -0.40 0.30 16 40 H 0.07 1.15 6.40 -51.93 -0.33 0.82 16 LS Contribution 289.47 15.07 4.36 4.36 Total: -1.00 -29.80 289.47 -7.88 -37.68 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -6.74 Total: -1.54 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -0.33 Total: -20.43 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.15 Total: -37.36 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.80 -7.88 -37.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720375474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.833 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds