Wall clock time and date at job start Mon Mar 30 2020 02:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47379 * 2 1 4 4 C 1.53005 * 109.47200 * 120.00393 * 2 1 3 5 5 N 1.46897 * 109.47012 * 63.56327 * 4 2 1 6 6 C 1.46900 * 110.99624 * 200.50039 * 5 4 2 7 7 H 1.09000 * 109.47419 * 54.99865 * 6 5 4 8 8 C 1.52996 * 109.47459 * 294.99966 * 6 5 4 9 9 C 1.53004 * 109.47273 * 174.99849 * 6 5 4 10 10 C 1.50707 * 109.47108 * 295.00283 * 9 6 5 11 11 H 1.08003 * 119.99586 * 359.97438 * 10 9 6 12 12 C 1.37878 * 119.99700 * 180.27378 * 10 9 6 13 13 N 1.31513 * 120.00173 * 359.72138 * 12 10 9 14 14 Si 1.86800 * 119.99551 * 179.72160 * 12 10 9 15 15 H 1.48497 * 109.47306 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46820 * 120.00157 * 14 12 10 17 17 H 1.48500 * 109.46993 * 239.99659 * 14 12 10 18 18 C 1.46891 * 111.00307 * 76.54712 * 5 4 2 19 19 C 1.52999 * 117.49951 * 359.65842 * 18 5 4 20 20 C 1.53002 * 117.49872 * 291.03535 * 18 5 4 21 21 H 1.08998 * 109.47185 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46995 * 299.99855 * 1 2 3 23 23 H 1.09001 * 109.47311 * 59.99400 * 1 2 3 24 24 H 1.09001 * 109.46995 * 240.00145 * 2 1 3 25 25 H 1.08996 * 109.47235 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47389 * 300.00552 * 3 2 1 27 27 H 1.09001 * 109.46938 * 60.00111 * 3 2 1 28 28 H 1.09002 * 109.46395 * 303.56167 * 4 2 1 29 29 H 1.09000 * 109.46641 * 183.56398 * 4 2 1 30 30 H 1.08997 * 109.47127 * 59.99573 * 8 6 5 31 31 H 1.08991 * 109.47691 * 180.02562 * 8 6 5 32 32 H 1.09008 * 109.46939 * 300.00090 * 8 6 5 33 33 H 1.08997 * 109.47632 * 174.99823 * 9 6 5 34 34 H 1.09001 * 109.46653 * 55.00032 * 9 6 5 35 35 H 0.97001 * 119.99809 * 179.97438 * 13 12 10 36 36 H 1.09003 * 115.55308 * 145.36420 * 18 5 4 37 37 H 1.09004 * 117.49611 * 0.02562 * 19 18 5 38 38 H 1.09000 * 117.50191 * 145.01838 * 19 18 5 39 39 H 1.08999 * 117.50416 * 214.97792 * 20 18 5 40 40 H 1.08995 * 117.49685 * 0.02562 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6219 -2.1289 1.2068 6 6 1.6501 -2.7270 2.5483 7 1 1.0415 -2.1282 3.2260 8 6 3.0918 -2.7674 3.0586 9 6 1.0917 -4.1501 2.4841 10 6 -0.3647 -4.1014 2.0997 11 1 -0.8441 -3.1505 1.9197 12 6 -1.0865 -5.2704 1.9840 13 7 -0.5027 -6.4282 2.2036 14 14 -2.8937 -5.2096 1.5151 15 1 -3.3080 -3.7966 1.3232 16 1 -3.1030 -5.9622 0.2522 17 1 -3.7065 -5.8218 2.5967 18 6 2.4531 -2.8971 0.2705 19 6 3.5562 -2.1443 -0.4761 20 6 2.2988 -2.5960 -1.2217 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6254 -0.2457 2.1380 29 1 3.1281 -0.6663 1.2817 30 1 3.4896 -1.7537 3.1043 31 1 3.1128 -3.2116 4.0537 32 1 3.7004 -3.3663 2.3809 33 1 1.1943 -4.6251 3.4597 34 1 1.6447 -4.7241 1.7406 35 1 -1.0107 -7.2506 2.1225 36 1 2.6533 -3.9294 0.5575 37 1 3.6655 -1.0792 -0.2720 38 1 4.4826 -2.6813 -0.6802 39 1 2.3979 -3.4300 -1.9164 40 1 1.5809 -1.8276 -1.5084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:37 Heat of formation + Delta-G solvation = 25.286000 kcal Electronic energy + Delta-G solvation = -16838.417287 eV Core-core repulsion = 14461.089136 eV Total energy + Delta-G solvation = -2377.328150 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.37243 -35.04532 -34.48269 -32.38615 -29.52875 -27.29131 -26.78327 -25.20142 -22.89054 -21.94943 -21.38923 -19.65746 -18.47437 -16.16123 -15.93968 -15.40966 -14.58482 -14.19273 -13.70744 -13.19784 -12.99885 -12.78816 -12.50816 -11.97360 -11.90136 -11.72464 -11.63189 -11.40089 -11.08984 -10.94371 -10.81487 -10.71678 -10.46601 -10.32021 -10.08211 -9.95132 -9.75106 -9.67753 -9.09254 -8.91874 -8.22883 -7.28880 -5.86224 -3.83338 3.39833 3.47386 3.52926 4.27477 4.57723 4.61335 5.12066 5.24765 5.32363 5.43139 5.47846 5.53647 5.67185 5.76802 5.83526 5.86495 5.89194 5.96155 6.01991 6.11046 6.14613 6.16186 6.29350 6.31572 6.41285 6.45715 6.54241 6.62739 6.69851 6.77155 6.91932 7.00023 7.59946 7.73720 7.93533 8.07871 8.15471 8.61160 9.22664 9.78206 11.25941 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.009002 C = 0.008021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.384371 B = 3109.538796 C = 3489.952018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C -0.145 4.145 4 C 0.054 3.946 5 N -0.477 5.477 6 C 0.087 3.913 7 H 0.070 0.930 8 C -0.180 4.180 9 C 0.028 3.972 10 C -0.486 4.486 11 H 0.061 0.939 12 C 0.050 3.950 13 N -0.905 5.905 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.287 1.287 17 H -0.288 1.288 18 C 0.049 3.951 19 C -0.235 4.235 20 C -0.184 4.184 21 H 0.077 0.923 22 H 0.045 0.955 23 H 0.038 0.962 24 H 0.087 0.913 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.256 0.744 36 H 0.120 0.880 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.754 11.353 -3.850 13.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C -0.203 4.203 4 C -0.074 4.074 5 N -0.197 5.197 6 C -0.021 4.021 7 H 0.089 0.911 8 C -0.239 4.239 9 C -0.009 4.009 10 C -0.524 4.524 11 H 0.079 0.921 12 C -0.149 4.149 13 N -0.546 5.546 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.214 1.214 17 H -0.215 1.215 18 C -0.061 4.061 19 C -0.274 4.274 20 C -0.221 4.221 21 H 0.096 0.904 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.105 0.895 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.066 0.934 36 H 0.137 0.863 37 H 0.116 0.884 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.196 11.161 -3.978 13.371 hybrid contribution -0.160 -0.075 -0.009 0.177 sum 6.036 11.087 -3.987 13.238 Atomic orbital electron populations 1.21715 0.94627 1.03373 0.99851 1.21580 0.97050 0.94835 0.99499 1.21828 1.00287 0.96869 1.01333 1.22280 0.97429 0.90002 0.97731 1.61896 1.49483 0.99789 1.08558 1.21964 0.92924 0.99845 0.87333 0.91150 1.22544 0.99692 1.00099 1.01556 1.19251 0.96272 0.88326 0.97030 1.21198 0.94654 0.92484 1.44100 0.92067 1.24995 0.97999 0.95715 0.96190 1.69972 1.36010 0.97282 1.51317 0.86599 0.85994 0.77945 0.77831 1.19761 1.21380 1.21477 1.22578 0.94434 0.98150 0.90916 1.23606 0.93671 1.01568 1.08526 1.23257 0.99441 1.03325 0.96105 0.90428 0.93630 0.94267 0.89493 0.93363 0.93002 0.93065 0.91762 0.94618 0.94213 0.92744 0.92955 0.96364 0.96197 0.93440 0.86257 0.88351 0.89894 0.89482 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.05 37.16 0.34 -1.75 16 2 C -0.11 -1.55 1.98 -90.62 -0.18 -1.73 16 3 C -0.15 -1.67 9.19 37.16 0.34 -1.33 16 4 C 0.05 0.83 3.09 -3.82 -0.01 0.82 16 5 N -0.48 -8.88 3.74 -218.72 -0.82 -9.70 16 6 C 0.09 1.76 2.24 -67.71 -0.15 1.61 16 7 H 0.07 1.46 7.95 -51.93 -0.41 1.05 16 8 C -0.18 -3.10 8.68 37.16 0.32 -2.78 16 9 C 0.03 0.71 4.32 -27.88 -0.12 0.59 16 10 C -0.49 -13.54 8.84 -34.44 -0.30 -13.84 16 11 H 0.06 1.71 7.74 -52.48 -0.41 1.31 16 12 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 13 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 14 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 15 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 18 C 0.05 0.88 4.45 -67.72 -0.30 0.58 16 19 C -0.23 -3.44 8.99 -26.73 -0.24 -3.68 16 20 C -0.18 -2.93 9.61 -26.73 -0.26 -3.19 16 21 H 0.08 1.40 7.71 -51.93 -0.40 1.00 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.09 1.24 3.56 -51.93 -0.18 1.05 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.00 7.80 -51.93 -0.40 0.60 16 29 H 0.04 0.53 5.56 -51.93 -0.29 0.24 16 30 H 0.04 0.61 7.02 -51.93 -0.36 0.24 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.90 6.93 -51.92 -0.36 0.54 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.53 6.05 -51.93 -0.31 0.22 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.12 2.40 5.69 -51.93 -0.30 2.11 16 37 H 0.10 1.36 4.93 -51.93 -0.26 1.11 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.10 1.62 5.60 -51.93 -0.29 1.33 16 LS Contribution 301.91 15.07 4.55 4.55 Total: -1.00 -28.92 301.91 -8.13 -37.05 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.92 Total: 0.86 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -0.66 Total: -23.35 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.08 Total: -36.28 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.92 -8.13 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.338 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds