Wall clock time and date at job start Mon Mar 30 2020 02:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47379 * 2 1 4 4 C 1.53005 * 109.47200 * 120.00393 * 2 1 3 5 5 N 1.46897 * 109.47012 * 63.56327 * 4 2 1 6 6 C 1.46900 * 110.99624 * 200.50039 * 5 4 2 7 7 H 1.09000 * 109.47419 * 54.99865 * 6 5 4 8 8 C 1.52996 * 109.47459 * 294.99966 * 6 5 4 9 9 C 1.53004 * 109.47273 * 174.99849 * 6 5 4 10 10 C 1.50707 * 109.47108 * 295.00283 * 9 6 5 11 11 H 1.08003 * 119.99586 * 359.97438 * 10 9 6 12 12 C 1.37878 * 119.99700 * 180.27378 * 10 9 6 13 13 N 1.31513 * 120.00173 * 359.72138 * 12 10 9 14 14 Si 1.86800 * 119.99551 * 179.72160 * 12 10 9 15 15 H 1.48497 * 109.47306 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46820 * 120.00157 * 14 12 10 17 17 H 1.48500 * 109.46993 * 239.99659 * 14 12 10 18 18 C 1.46891 * 111.00307 * 76.54712 * 5 4 2 19 19 C 1.52999 * 117.49951 * 359.65842 * 18 5 4 20 20 C 1.53002 * 117.49872 * 291.03535 * 18 5 4 21 21 H 1.08998 * 109.47185 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46995 * 299.99855 * 1 2 3 23 23 H 1.09001 * 109.47311 * 59.99400 * 1 2 3 24 24 H 1.09001 * 109.46995 * 240.00145 * 2 1 3 25 25 H 1.08996 * 109.47235 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47389 * 300.00552 * 3 2 1 27 27 H 1.09001 * 109.46938 * 60.00111 * 3 2 1 28 28 H 1.09002 * 109.46395 * 303.56167 * 4 2 1 29 29 H 1.09000 * 109.46641 * 183.56398 * 4 2 1 30 30 H 1.08997 * 109.47127 * 59.99573 * 8 6 5 31 31 H 1.08991 * 109.47691 * 180.02562 * 8 6 5 32 32 H 1.09008 * 109.46939 * 300.00090 * 8 6 5 33 33 H 1.08997 * 109.47632 * 174.99823 * 9 6 5 34 34 H 1.09001 * 109.46653 * 55.00032 * 9 6 5 35 35 H 0.97001 * 119.99809 * 179.97438 * 13 12 10 36 36 H 1.09003 * 115.55308 * 145.36420 * 18 5 4 37 37 H 1.09004 * 117.49611 * 0.02562 * 19 18 5 38 38 H 1.09000 * 117.50191 * 145.01838 * 19 18 5 39 39 H 1.08999 * 117.50416 * 214.97792 * 20 18 5 40 40 H 1.08995 * 117.49685 * 0.02562 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6219 -2.1289 1.2068 6 6 1.6501 -2.7270 2.5483 7 1 1.0415 -2.1282 3.2260 8 6 3.0918 -2.7674 3.0586 9 6 1.0917 -4.1501 2.4841 10 6 -0.3647 -4.1014 2.0997 11 1 -0.8441 -3.1505 1.9197 12 6 -1.0865 -5.2704 1.9840 13 7 -0.5027 -6.4282 2.2036 14 14 -2.8937 -5.2096 1.5151 15 1 -3.3080 -3.7966 1.3232 16 1 -3.1030 -5.9622 0.2522 17 1 -3.7065 -5.8218 2.5967 18 6 2.4531 -2.8971 0.2705 19 6 3.5562 -2.1443 -0.4761 20 6 2.2988 -2.5960 -1.2217 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6254 -0.2457 2.1380 29 1 3.1281 -0.6663 1.2817 30 1 3.4896 -1.7537 3.1043 31 1 3.1128 -3.2116 4.0537 32 1 3.7004 -3.3663 2.3809 33 1 1.1943 -4.6251 3.4597 34 1 1.6447 -4.7241 1.7406 35 1 -1.0107 -7.2506 2.1225 36 1 2.6533 -3.9294 0.5575 37 1 3.6655 -1.0792 -0.2720 38 1 4.4826 -2.6813 -0.6802 39 1 2.3979 -3.4300 -1.9164 40 1 1.5809 -1.8276 -1.5084 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:36 Heat of formation + Delta-G solvation = 9.263240 kcal Electronic energy + Delta-G solvation = -16839.112086 eV Core-core repulsion = 14461.089136 eV Total energy + Delta-G solvation = -2378.022949 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.72190 -36.56923 -35.71773 -34.44885 -31.10254 -29.07868 -27.88165 -26.54188 -24.82183 -23.21008 -22.87631 -20.83981 -19.98174 -18.31972 -17.34146 -16.80252 -16.46369 -15.59002 -14.92637 -14.71813 -14.48814 -14.00839 -13.94034 -13.70918 -13.30800 -13.19586 -13.02369 -12.88386 -12.67770 -12.49169 -12.35616 -12.16151 -12.06676 -11.73746 -11.67252 -11.28489 -11.13094 -10.99936 -10.95168 -10.82740 -10.45738 -8.66423 -8.08743 -6.12469 1.40063 1.41410 1.54287 2.47809 2.94802 3.22659 3.30374 3.96151 4.07151 4.12098 4.19807 4.27107 4.37882 4.42902 4.55215 4.60285 4.67560 4.75596 4.86355 4.90321 4.92818 4.98560 5.04046 5.12981 5.19632 5.22081 5.24035 5.28854 5.34573 5.36469 5.53907 5.62896 5.68240 5.74619 5.93225 6.37098 6.51884 6.61328 7.01471 7.52967 9.03550 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025486 B = 0.009002 C = 0.008021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.384371 B = 3109.538796 C = 3489.952018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.139 4.139 4 C 0.055 3.945 5 N -0.493 5.493 6 C 0.095 3.905 7 H 0.063 0.937 8 C -0.168 4.168 9 C 0.035 3.965 10 C -0.492 4.492 11 H 0.057 0.943 12 C -0.005 4.005 13 N -0.941 5.941 14 Si 0.953 3.047 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.282 1.282 18 C 0.019 3.981 19 C -0.200 4.200 20 C -0.184 4.184 21 H 0.040 0.960 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.049 0.951 33 H -0.010 1.010 34 H -0.001 1.001 35 H 0.257 0.743 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.262 13.546 -4.750 16.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.197 4.197 4 C -0.073 4.073 5 N -0.213 5.213 6 C -0.013 4.013 7 H 0.081 0.919 8 C -0.227 4.227 9 C -0.002 4.002 10 C -0.530 4.530 11 H 0.075 0.925 12 C -0.201 4.201 13 N -0.584 5.584 14 Si 0.779 3.221 15 H -0.190 1.190 16 H -0.211 1.211 17 H -0.209 1.209 18 C -0.090 4.090 19 C -0.239 4.239 20 C -0.222 4.222 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.074 0.926 24 H 0.104 0.896 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.008 0.992 34 H 0.017 0.983 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.709 13.372 -4.882 15.737 hybrid contribution -0.307 -0.768 0.264 0.868 sum 6.402 12.604 -4.617 14.872 Atomic orbital electron populations 1.21659 0.95738 1.01168 1.00670 1.21545 0.96048 0.96463 0.98478 1.21769 1.01076 0.94746 1.02110 1.22361 0.98234 0.88039 0.98625 1.61821 1.50767 1.01346 1.07414 1.21636 0.94391 0.96476 0.88762 0.91929 1.22394 0.97545 1.01621 1.01174 1.19095 0.95231 0.91348 0.94501 1.21489 0.96023 0.92190 1.43300 0.92514 1.25814 1.02440 0.95440 0.96388 1.70097 1.37728 0.97913 1.52633 0.85572 0.80781 0.78194 0.77533 1.18973 1.21058 1.20857 1.22428 0.97367 0.97287 0.91957 1.23611 0.93160 1.02029 1.05054 1.23319 1.00584 1.03596 0.94682 0.94043 0.93694 0.92592 0.89577 0.92061 0.91828 0.92763 0.91969 0.93232 0.91609 0.92805 0.93198 0.99191 0.98328 0.93382 0.89413 0.86791 0.88437 0.89266 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.05 71.98 0.65 -3.22 16 2 C -0.11 -2.71 1.98 -10.79 -0.02 -2.73 16 3 C -0.14 -2.67 9.19 71.98 0.66 -2.01 16 4 C 0.05 1.58 3.09 86.31 0.27 1.85 16 5 N -0.49 -18.19 3.74 -845.91 -3.17 -21.35 16 6 C 0.10 3.91 2.24 44.92 0.10 4.01 16 7 H 0.06 2.62 7.95 -2.39 -0.02 2.60 16 8 C -0.17 -5.68 8.68 71.98 0.62 -5.06 16 9 C 0.04 1.85 4.32 29.85 0.13 1.98 16 10 C -0.49 -28.15 8.84 25.60 0.23 -27.93 16 11 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 12 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 13 N -0.94 -58.39 13.29 21.45 0.28 -58.11 16 14 Si 0.95 46.20 29.54 68.60 2.03 48.22 16 15 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 18 C 0.02 0.68 4.45 44.92 0.20 0.88 16 19 C -0.20 -5.34 8.99 30.59 0.27 -5.07 16 20 C -0.18 -5.65 9.61 30.60 0.29 -5.36 16 21 H 0.04 1.48 7.71 -2.39 -0.02 1.46 16 22 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.09 2.22 3.56 -2.39 -0.01 2.21 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.82 7.80 -2.39 -0.02 1.80 16 29 H 0.05 1.30 5.56 -2.39 -0.01 1.29 16 30 H 0.06 1.87 7.02 -2.39 -0.02 1.85 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.70 6.93 -2.38 -0.02 1.68 16 33 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.00 -0.08 6.05 -2.39 -0.01 -0.10 16 35 H 0.26 15.14 8.31 -92.71 -0.77 14.36 16 36 H 0.09 3.67 5.69 -2.39 -0.01 3.66 16 37 H 0.11 2.71 4.93 -2.38 -0.01 2.70 16 38 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.11 3.18 5.60 -2.39 -0.01 3.17 16 Total: -1.00 -63.26 301.91 4.01 -59.25 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.99 Total: 14.47 kcal Atomic # 6 Polarization: -46.36 SS G_CDS: 3.87 Total: -42.49 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -2.88 Total: -79.46 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -63.26 4.01 -59.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.517 kcal (2) G-P(sol) polarization free energy of solvation -63.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds