Wall clock time and date at job start Mon Mar 30 2020 02:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47138 * 2 1 4 4 C 1.52999 * 109.47012 * 119.99970 * 2 1 3 5 5 N 1.46898 * 109.47045 * 60.91453 * 4 2 1 6 6 C 1.46905 * 110.99916 * 192.44016 * 5 4 2 7 7 H 1.08997 * 109.47006 * 304.53777 * 6 5 4 8 8 C 1.53001 * 109.46945 * 64.53315 * 6 5 4 9 9 C 1.52992 * 109.47244 * 184.53403 * 6 5 4 10 10 C 1.50702 * 109.47447 * 180.29998 * 9 6 5 11 11 H 1.08001 * 119.99440 * 354.87376 * 10 9 6 12 12 C 1.37873 * 120.00188 * 175.15197 * 10 9 6 13 13 N 1.31513 * 120.00059 * 359.72779 * 12 10 9 14 14 Si 1.86800 * 120.00072 * 179.72282 * 12 10 9 15 15 H 1.48503 * 109.47093 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47164 * 120.00140 * 14 12 10 17 17 H 1.48493 * 109.47227 * 240.00196 * 14 12 10 18 18 C 1.46893 * 111.00008 * 68.48717 * 5 4 2 19 19 C 1.53001 * 117.49688 * 267.58051 * 18 5 4 20 20 C 1.53001 * 60.00099 * 252.50977 * 19 18 5 21 21 H 1.09004 * 109.47079 * 59.99664 * 1 2 3 22 22 H 1.08995 * 109.47322 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47159 * 300.00358 * 1 2 3 24 24 H 1.08994 * 109.47285 * 240.00370 * 2 1 3 25 25 H 1.08999 * 109.47357 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.47410 * 300.00133 * 3 2 1 27 27 H 1.09003 * 109.46913 * 59.99862 * 3 2 1 28 28 H 1.09009 * 109.47079 * 300.91203 * 4 2 1 29 29 H 1.09003 * 109.46928 * 180.91625 * 4 2 1 30 30 H 1.08997 * 109.47237 * 299.99773 * 8 6 5 31 31 H 1.08998 * 109.47360 * 60.00162 * 8 6 5 32 32 H 1.09001 * 109.46771 * 179.97438 * 8 6 5 33 33 H 1.09000 * 109.47214 * 60.30186 * 9 6 5 34 34 H 1.09006 * 109.47206 * 300.30137 * 9 6 5 35 35 H 0.97001 * 119.99888 * 180.02562 * 13 12 10 36 36 H 1.08994 * 115.55380 * 53.28879 * 18 5 4 37 37 H 1.08994 * 117.50086 * 0.02562 * 19 18 5 38 38 H 1.08999 * 117.50155 * 145.02114 * 19 18 5 39 39 H 1.08996 * 117.50212 * 252.50990 * 20 19 18 40 40 H 1.09005 * 117.49502 * 107.48679 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5684 -2.1124 1.2382 6 6 1.7815 -2.7509 2.5440 7 1 2.8332 -2.6727 2.8194 8 6 0.9244 -2.0502 3.6001 9 6 1.3842 -4.2260 2.4614 10 6 1.5958 -4.8792 3.8029 11 1 2.0526 -4.3231 4.6082 12 6 1.2115 -6.1885 4.0005 13 7 0.6553 -6.8657 3.0198 14 14 1.4809 -7.0006 5.6610 15 1 2.1189 -6.0317 6.5881 16 1 0.1740 -7.4318 6.2189 17 1 2.3633 -8.1834 5.4962 18 6 2.2158 -2.8792 0.1655 19 6 1.4989 -2.9493 -1.1843 20 6 1.5438 -4.1806 -0.2772 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5137 -0.8900 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6633 -0.2169 2.1392 29 1 3.1299 -0.7070 1.2575 30 1 1.2075 -0.9993 3.6591 31 1 -0.1274 -2.1284 3.3248 32 1 1.0821 -2.5242 4.5689 33 1 1.9985 -4.7263 1.7128 34 1 0.3338 -4.3043 2.1808 35 1 0.3846 -7.7867 3.1589 36 1 3.3052 -2.8469 0.1560 37 1 0.5471 -2.4261 -1.2765 38 1 2.1166 -2.9629 -2.0823 39 1 2.1912 -5.0042 -0.5782 40 1 0.6214 -4.4677 0.2276 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829179695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:38 Heat of formation + Delta-G solvation = -3.252080 kcal Electronic energy + Delta-G solvation = -16585.235751 eV Core-core repulsion = 14206.670096 eV Total energy + Delta-G solvation = -2378.565654 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.21044 -36.50462 -36.11909 -34.44165 -31.60769 -28.67344 -27.86571 -26.74265 -24.82908 -23.02450 -22.41451 -20.74950 -20.44794 -18.44071 -16.93465 -16.64644 -16.35674 -15.76863 -15.37609 -15.14359 -14.48407 -14.23499 -14.03234 -13.53258 -13.14143 -13.04480 -12.88254 -12.81034 -12.73633 -12.52125 -12.25140 -12.17146 -12.11316 -11.71489 -11.61234 -11.51365 -11.23422 -11.06926 -10.70995 -10.64634 -10.33575 -9.10334 -8.13874 -6.21781 1.39334 1.40341 1.52295 2.42422 2.91214 3.11181 3.19935 3.96782 4.10817 4.14648 4.20575 4.27458 4.36025 4.45768 4.56999 4.70975 4.71300 4.81348 4.85694 4.89584 4.93185 4.99634 5.11359 5.15592 5.20830 5.21790 5.31611 5.34939 5.41359 5.46546 5.58793 5.60205 5.67829 5.81884 5.90829 6.22348 6.44433 6.48593 6.94574 7.45040 8.97673 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038176 B = 0.007115 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.266970 B = 3934.485257 C = 4379.210516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.087 4.087 3 C -0.141 4.141 4 C 0.059 3.941 5 N -0.508 5.508 6 C 0.094 3.906 7 H 0.013 0.987 8 C -0.119 4.119 9 C 0.042 3.958 10 C -0.532 4.532 11 H 0.055 0.945 12 C 0.004 3.996 13 N -0.928 5.928 14 Si 0.955 3.045 15 H -0.264 1.264 16 H -0.280 1.280 17 H -0.281 1.281 18 C 0.004 3.996 19 C -0.142 4.142 20 C -0.170 4.170 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.024 0.976 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.011 0.989 34 H -0.007 1.007 35 H 0.260 0.740 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 13.479 -6.613 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.106 4.106 3 C -0.198 4.198 4 C -0.069 4.069 5 N -0.233 5.233 6 C -0.013 4.013 7 H 0.031 0.969 8 C -0.176 4.176 9 C 0.004 3.996 10 C -0.570 4.570 11 H 0.073 0.927 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.781 3.219 15 H -0.188 1.188 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.105 4.105 19 C -0.179 4.179 20 C -0.207 4.207 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.011 0.989 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.716 13.335 -6.725 15.033 hybrid contribution 0.894 -1.087 1.143 1.813 sum 2.610 12.249 -5.582 13.712 Atomic orbital electron populations 1.21661 0.94910 1.01390 1.00954 1.21070 0.96445 0.95919 0.97124 1.21778 1.00811 0.94938 1.02307 1.22275 0.96659 0.88288 0.99632 1.61864 1.56912 1.01700 1.02776 1.21533 0.95876 0.95659 0.88280 0.96920 1.21636 0.99321 0.98770 0.97912 1.19189 0.94961 0.90061 0.95356 1.21684 1.39269 0.97393 0.98702 0.92650 1.25817 0.95155 0.98156 1.00222 1.70106 1.42809 1.10423 1.33566 0.85542 0.77823 0.78433 0.80106 1.18841 1.20609 1.20663 1.22210 0.94204 0.99783 0.94305 1.23157 1.02376 0.99901 0.92453 1.22894 1.02651 0.91548 1.03640 0.92290 0.93509 0.93492 0.91155 0.92748 0.91484 0.92575 0.90703 0.95809 0.92055 0.93706 0.92975 0.97106 0.98879 0.93092 0.90890 0.88236 0.86982 0.89690 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.88 71.98 0.64 -2.55 16 2 C -0.09 -2.05 2.66 -10.79 -0.03 -2.08 16 3 C -0.14 -2.60 9.19 71.98 0.66 -1.94 16 4 C 0.06 1.71 4.26 86.30 0.37 2.08 16 5 N -0.51 -18.33 3.76 -845.91 -3.18 -21.51 16 6 C 0.09 4.03 2.17 44.91 0.10 4.13 16 7 H 0.01 0.57 8.13 -2.39 -0.02 0.55 16 8 C -0.12 -4.65 8.86 71.98 0.64 -4.02 16 9 C 0.04 2.19 3.11 29.85 0.09 2.28 16 10 C -0.53 -30.22 8.27 25.60 0.21 -30.01 16 11 H 0.06 3.06 6.89 -2.91 -0.02 3.04 16 12 C 0.00 0.24 5.46 84.65 0.46 0.70 16 13 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 14 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 15 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 C 0.00 0.14 4.05 44.92 0.18 0.32 16 19 C -0.14 -4.13 8.80 30.60 0.27 -3.86 16 20 C -0.17 -6.49 7.71 30.60 0.24 -6.25 16 21 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.05 1.36 6.57 -2.39 -0.02 1.34 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.69 6.29 -2.39 -0.02 1.68 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 2.14 5.94 -2.38 -0.01 2.13 16 29 H 0.02 0.69 8.10 -2.39 -0.02 0.67 16 30 H 0.06 1.99 6.28 -2.39 -0.01 1.97 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 2.16 6.70 -2.39 -0.02 2.14 16 33 H 0.01 0.60 5.37 -2.39 -0.01 0.58 16 34 H -0.01 -0.42 7.33 -2.38 -0.02 -0.44 16 35 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.10 2.86 6.89 -2.39 -0.02 2.84 16 38 H 0.11 2.63 8.14 -2.39 -0.02 2.62 16 39 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.07 3.46 6.42 -2.38 -0.02 3.45 16 Total: -1.00 -62.09 303.83 3.94 -58.16 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.98 Total: 14.00 kcal Atomic # 6 Polarization: -45.03 SS G_CDS: 3.83 Total: -41.20 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -2.90 Total: -77.75 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -62.09 3.94 -58.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.904 kcal (2) G-P(sol) polarization free energy of solvation -62.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds