Wall clock time and date at job start Mon Mar 30 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47346 * 2 1 4 4 C 1.52999 * 109.46972 * 120.00616 * 2 1 3 5 5 C 1.50698 * 109.47532 * 184.99783 * 4 2 1 6 6 H 1.08008 * 119.99534 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00269 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00021 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99988 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47194 * 89.99759 * 9 7 5 11 11 H 1.48494 * 109.47098 * 209.99709 * 9 7 5 12 12 H 1.48501 * 109.47220 * 329.99751 * 9 7 5 13 13 N 1.46901 * 109.47180 * 239.99886 * 2 1 3 14 14 C 1.46898 * 111.00106 * 307.28685 * 13 2 1 15 15 C 1.46901 * 110.99638 * 71.23526 * 13 2 1 16 16 C 1.53009 * 109.47145 * 184.23001 * 15 13 2 17 17 C 1.52994 * 109.47272 * 180.02562 * 16 15 13 18 18 C 1.53007 * 109.46807 * 60.00415 * 17 16 15 19 19 C 1.52998 * 109.47171 * 299.99655 * 18 17 16 20 20 C 1.53001 * 109.46895 * 60.00220 * 19 18 17 21 21 H 1.08994 * 109.46990 * 306.03925 * 1 2 3 22 22 H 1.09006 * 109.46712 * 66.03728 * 1 2 3 23 23 H 1.08999 * 109.47468 * 186.03431 * 1 2 3 24 24 H 1.09003 * 109.46761 * 304.99601 * 4 2 1 25 25 H 1.09000 * 109.47532 * 64.99077 * 4 2 1 26 26 H 0.97001 * 120.00081 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.47069 * 183.95136 * 14 13 2 28 28 H 1.08995 * 109.47479 * 63.95507 * 14 13 2 29 29 H 1.08998 * 109.47049 * 303.94958 * 14 13 2 30 30 H 1.08993 * 109.47739 * 304.23335 * 15 13 2 31 31 H 1.09002 * 109.46932 * 300.00790 * 16 15 13 32 32 H 1.08997 * 109.46482 * 60.00481 * 16 15 13 33 33 H 1.08995 * 109.47353 * 300.00795 * 17 16 15 34 34 H 1.08999 * 109.47348 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.46731 * 180.02562 * 18 17 16 36 36 H 1.08996 * 109.47297 * 60.00369 * 18 17 16 37 37 H 1.09006 * 109.47450 * 300.00482 * 19 18 17 38 38 H 1.09001 * 109.47265 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.47270 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.47431 * 60.00015 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6152 1.3128 6 1 4.0790 -0.0863 0.5392 7 6 4.2303 -1.1930 2.3583 8 7 5.5409 -1.0999 2.4140 9 14 3.3013 -2.1082 3.6958 10 1 3.1706 -3.5383 3.3177 11 1 4.0445 -2.0008 4.9768 12 1 1.9502 -1.5131 3.8559 13 7 2.0197 -0.6925 -1.1994 14 6 1.4119 -2.0241 -1.3235 15 6 1.7792 0.1104 -2.4059 16 6 2.2048 -0.6855 -3.6414 17 6 1.9550 0.1509 -4.8979 18 6 2.7684 1.4445 -4.8194 19 6 2.3429 2.2404 -3.5840 20 6 2.5927 1.4039 -2.3275 21 1 -0.3633 0.6046 0.8309 22 1 -0.3633 0.4174 -0.9392 23 1 -0.3634 -1.0219 0.1080 24 1 1.6054 -0.2619 2.1369 25 1 1.7515 -1.7716 1.2055 26 1 6.0253 -1.5067 3.1494 27 1 1.8436 -2.5422 -2.1799 28 1 0.3363 -1.9207 -1.4660 29 1 1.6050 -2.5975 -0.4169 30 1 0.7187 0.3514 -2.4765 31 1 3.2655 -0.9266 -3.5707 32 1 1.6256 -1.6072 -3.6970 33 1 0.8945 0.3924 -4.9687 34 1 2.2577 -0.4162 -5.7781 35 1 2.5900 2.0406 -5.7144 36 1 3.8289 1.2031 -4.7487 37 1 1.2822 2.4818 -3.6548 38 1 2.9220 3.1622 -3.5283 39 1 2.2900 1.9710 -1.4473 40 1 3.6532 1.1625 -2.2566 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829180311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:11 Heat of formation + Delta-G solvation = -16.725985 kcal Electronic energy + Delta-G solvation = -16709.649786 eV Core-core repulsion = 14330.499859 eV Total energy + Delta-G solvation = -2379.149927 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.20910 -36.37753 -32.76624 -31.28024 -30.54380 -28.58529 -27.79080 -25.28305 -22.94562 -22.12035 -21.10399 -19.52933 -18.45999 -16.54724 -16.06606 -15.00570 -14.34556 -14.13227 -14.01862 -13.70083 -13.24287 -13.12958 -12.57887 -12.23460 -12.16514 -12.02431 -11.82882 -11.38286 -11.32726 -11.01043 -10.86625 -10.79715 -10.69235 -10.34339 -10.23247 -9.91820 -9.67708 -9.47649 -9.46874 -8.97511 -8.38466 -7.40605 -5.87266 -3.80724 3.37743 3.45321 3.47947 4.47820 4.57522 4.92455 4.93346 5.16756 5.42788 5.46312 5.50386 5.64638 5.66001 5.71819 5.73711 5.77733 5.83896 5.90601 5.94333 6.03265 6.08255 6.13603 6.26792 6.31013 6.41398 6.45528 6.46070 6.53395 6.61864 6.66001 6.75792 6.92222 7.18617 7.40124 7.87568 7.93255 8.03760 8.76850 9.25839 9.76083 11.26861 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035397 B = 0.007452 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.829970 B = 3756.254046 C = 3991.410159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.092 3.908 3 H 0.078 0.922 4 C -0.007 4.007 5 C -0.488 4.488 6 H 0.079 0.921 7 C 0.061 3.939 8 N -0.909 5.909 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.509 5.509 14 C 0.024 3.976 15 C 0.086 3.914 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.112 4.112 21 H 0.054 0.946 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.016 0.984 25 H 0.012 0.988 26 H 0.259 0.741 27 H 0.060 0.940 28 H 0.014 0.986 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.376 2.962 -12.143 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.016 4.016 3 H 0.096 0.904 4 C -0.044 4.044 5 C -0.526 4.526 6 H 0.097 0.903 7 C -0.139 4.139 8 N -0.549 5.549 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.232 5.232 14 C -0.124 4.124 15 C -0.023 4.023 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.150 4.150 21 H 0.073 0.927 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.034 0.966 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.032 0.968 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.709 2.842 -11.972 15.075 hybrid contribution -1.300 -0.516 0.761 1.593 sum -10.009 2.325 -11.211 15.208 Atomic orbital electron populations 1.22542 0.99951 1.01384 1.00629 1.21744 0.89709 0.98830 0.91303 0.90384 1.19683 0.97976 0.95005 0.91733 1.21065 0.89423 1.33690 1.08409 0.90293 1.25009 0.94657 0.96386 0.97804 1.69914 1.06391 1.46320 1.32315 0.86909 0.80408 0.80622 0.82040 1.20629 1.21669 1.19363 1.62112 1.57962 1.02019 1.01092 1.22405 0.95441 0.92098 1.02502 1.21586 0.96627 0.93655 0.90413 1.21678 1.02528 0.97813 0.93317 1.21511 0.99761 0.96383 0.97726 1.21538 1.00294 0.96259 0.97552 1.21527 1.00716 0.98230 0.95003 1.21588 1.01633 0.94980 0.96774 0.92732 0.93794 0.92945 0.96590 0.96997 0.93138 0.92161 0.96794 0.90848 0.95180 0.90954 0.92175 0.92593 0.92337 0.92676 0.91813 0.92665 0.92165 0.91781 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.11 8.30 37.16 0.31 -2.80 16 2 C 0.09 1.84 2.12 -67.71 -0.14 1.70 16 3 H 0.08 1.61 5.96 -51.93 -0.31 1.30 16 4 C -0.01 -0.16 3.46 -27.88 -0.10 -0.25 16 5 C -0.49 -13.95 9.39 -34.44 -0.32 -14.27 16 6 H 0.08 2.47 7.99 -52.48 -0.42 2.05 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 8 N -0.91 -28.59 13.96 55.43 0.77 -27.82 16 9 Si 0.87 22.15 27.47 -169.99 -4.67 17.48 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 13 N -0.51 -9.69 4.28 -226.90 -0.97 -10.66 16 14 C 0.02 0.41 8.08 60.06 0.49 0.90 16 15 C 0.09 1.35 1.83 -67.71 -0.12 1.23 16 16 C -0.12 -1.61 4.69 -26.73 -0.13 -1.74 16 17 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 18 C -0.12 -1.36 5.92 -26.73 -0.16 -1.51 16 19 C -0.12 -1.45 5.92 -26.73 -0.16 -1.60 16 20 C -0.11 -1.74 5.11 -26.73 -0.14 -1.88 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 22 H 0.04 0.67 6.45 -51.93 -0.34 0.33 16 23 H 0.05 0.86 6.79 -51.93 -0.35 0.51 16 24 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 25 H 0.01 0.29 5.74 -51.93 -0.30 -0.01 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.06 0.95 6.20 -51.93 -0.32 0.63 16 28 H 0.01 0.22 6.59 -51.93 -0.34 -0.13 16 29 H 0.07 1.41 6.26 -51.93 -0.32 1.08 16 30 H 0.03 0.47 6.42 -51.93 -0.33 0.14 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.81 6.32 -51.93 -0.33 0.48 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.05 6.29 -51.93 -0.33 0.72 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 292.46 15.07 4.41 4.41 Total: -1.00 -30.35 292.46 -8.22 -38.58 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -7.04 Total: -1.96 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -0.73 Total: -20.03 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: -0.20 Total: -38.48 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.35 -8.22 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.852 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds