Wall clock time and date at job start Mon Mar 30 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47346 * 2 1 4 4 C 1.52999 * 109.46972 * 120.00616 * 2 1 3 5 5 C 1.50698 * 109.47532 * 184.99783 * 4 2 1 6 6 H 1.08008 * 119.99534 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00269 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00021 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99988 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47194 * 89.99759 * 9 7 5 11 11 H 1.48494 * 109.47098 * 209.99709 * 9 7 5 12 12 H 1.48501 * 109.47220 * 329.99751 * 9 7 5 13 13 N 1.46901 * 109.47180 * 239.99886 * 2 1 3 14 14 C 1.46898 * 111.00106 * 307.28685 * 13 2 1 15 15 C 1.46901 * 110.99638 * 71.23526 * 13 2 1 16 16 C 1.53009 * 109.47145 * 184.23001 * 15 13 2 17 17 C 1.52994 * 109.47272 * 180.02562 * 16 15 13 18 18 C 1.53007 * 109.46807 * 60.00415 * 17 16 15 19 19 C 1.52998 * 109.47171 * 299.99655 * 18 17 16 20 20 C 1.53001 * 109.46895 * 60.00220 * 19 18 17 21 21 H 1.08994 * 109.46990 * 306.03925 * 1 2 3 22 22 H 1.09006 * 109.46712 * 66.03728 * 1 2 3 23 23 H 1.08999 * 109.47468 * 186.03431 * 1 2 3 24 24 H 1.09003 * 109.46761 * 304.99601 * 4 2 1 25 25 H 1.09000 * 109.47532 * 64.99077 * 4 2 1 26 26 H 0.97001 * 120.00081 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.47069 * 183.95136 * 14 13 2 28 28 H 1.08995 * 109.47479 * 63.95507 * 14 13 2 29 29 H 1.08998 * 109.47049 * 303.94958 * 14 13 2 30 30 H 1.08993 * 109.47739 * 304.23335 * 15 13 2 31 31 H 1.09002 * 109.46932 * 300.00790 * 16 15 13 32 32 H 1.08997 * 109.46482 * 60.00481 * 16 15 13 33 33 H 1.08995 * 109.47353 * 300.00795 * 17 16 15 34 34 H 1.08999 * 109.47348 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.46731 * 180.02562 * 18 17 16 36 36 H 1.08996 * 109.47297 * 60.00369 * 18 17 16 37 37 H 1.09006 * 109.47450 * 300.00482 * 19 18 17 38 38 H 1.09001 * 109.47265 * 180.02562 * 19 18 17 39 39 H 1.08999 * 109.47270 * 179.97438 * 20 19 18 40 40 H 1.08993 * 109.47431 * 60.00015 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6152 1.3128 6 1 4.0790 -0.0863 0.5392 7 6 4.2303 -1.1930 2.3583 8 7 5.5409 -1.0999 2.4140 9 14 3.3013 -2.1082 3.6958 10 1 3.1706 -3.5383 3.3177 11 1 4.0445 -2.0008 4.9768 12 1 1.9502 -1.5131 3.8559 13 7 2.0197 -0.6925 -1.1994 14 6 1.4119 -2.0241 -1.3235 15 6 1.7792 0.1104 -2.4059 16 6 2.2048 -0.6855 -3.6414 17 6 1.9550 0.1509 -4.8979 18 6 2.7684 1.4445 -4.8194 19 6 2.3429 2.2404 -3.5840 20 6 2.5927 1.4039 -2.3275 21 1 -0.3633 0.6046 0.8309 22 1 -0.3633 0.4174 -0.9392 23 1 -0.3634 -1.0219 0.1080 24 1 1.6054 -0.2619 2.1369 25 1 1.7515 -1.7716 1.2055 26 1 6.0253 -1.5067 3.1494 27 1 1.8436 -2.5422 -2.1799 28 1 0.3363 -1.9207 -1.4660 29 1 1.6050 -2.5975 -0.4169 30 1 0.7187 0.3514 -2.4765 31 1 3.2655 -0.9266 -3.5707 32 1 1.6256 -1.6072 -3.6970 33 1 0.8945 0.3924 -4.9687 34 1 2.2577 -0.4162 -5.7781 35 1 2.5900 2.0406 -5.7144 36 1 3.8289 1.2031 -4.7487 37 1 1.2822 2.4818 -3.6548 38 1 2.9220 3.1622 -3.5283 39 1 2.2900 1.9710 -1.4473 40 1 3.6532 1.1625 -2.2566 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829180311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:11 Heat of formation + Delta-G solvation = -35.413305 kcal Electronic energy + Delta-G solvation = -16710.460129 eV Core-core repulsion = 14330.499859 eV Total energy + Delta-G solvation = -2379.960270 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.50738 -37.68057 -34.82975 -32.88460 -31.70175 -29.92924 -29.52526 -26.62493 -24.77013 -23.30825 -22.41791 -20.74707 -19.94318 -18.77210 -17.42634 -16.48361 -16.07860 -15.45149 -15.20351 -14.90307 -14.75795 -14.51367 -14.27589 -13.88291 -13.52772 -13.48740 -13.24041 -12.84338 -12.65710 -12.57219 -12.16403 -12.10126 -11.94931 -11.91594 -11.67900 -11.43900 -11.31487 -11.06920 -11.00402 -10.73165 -10.63589 -8.80965 -8.16802 -6.15352 1.36236 1.37878 1.48953 2.42049 3.09204 3.24484 3.82721 3.87543 4.09374 4.23500 4.33555 4.37632 4.40872 4.49301 4.52084 4.60801 4.65647 4.67525 4.76627 4.78378 4.92127 4.99555 5.08753 5.12593 5.15794 5.18943 5.24777 5.31353 5.34067 5.34739 5.39090 5.44821 5.60416 5.63047 5.77100 6.41030 6.52900 6.60166 6.92800 7.44998 9.00823 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035397 B = 0.007452 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.829970 B = 3756.254046 C = 3991.410159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 H 0.062 0.938 4 C -0.004 4.004 5 C -0.487 4.487 6 H 0.034 0.966 7 C -0.004 4.004 8 N -0.959 5.959 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.248 1.248 13 N -0.541 5.541 14 C 0.027 3.973 15 C 0.089 3.911 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.118 4.118 19 C -0.111 4.111 20 C -0.111 4.111 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.018 0.982 25 H 0.017 0.983 26 H 0.260 0.740 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.150 2.712 -13.107 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 H 0.080 0.920 4 C -0.041 4.041 5 C -0.526 4.526 6 H 0.052 0.948 7 C -0.199 4.199 8 N -0.602 5.602 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.172 1.172 13 N -0.265 5.265 14 C -0.121 4.121 15 C -0.019 4.019 16 C -0.151 4.151 17 C -0.148 4.148 18 C -0.156 4.156 19 C -0.148 4.148 20 C -0.149 4.149 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.036 0.964 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.505 2.599 -12.954 17.520 hybrid contribution -0.347 -0.389 1.003 1.131 sum -11.852 2.209 -11.951 16.976 Atomic orbital electron populations 1.22390 0.96722 1.02142 1.02080 1.21519 0.92174 0.97384 0.90263 0.91983 1.19626 0.94621 0.95806 0.94051 1.21293 0.91996 1.32373 1.06921 0.94794 1.25950 0.95503 0.97676 1.00746 1.70088 1.08452 1.48085 1.33567 0.85755 0.79686 0.79348 0.78371 1.19718 1.21449 1.17184 1.62011 1.59314 1.03162 1.02008 1.22366 0.96844 0.91058 1.01824 1.21642 0.97209 0.93325 0.89755 1.21658 1.01085 0.98517 0.93791 1.21492 1.00615 0.95955 0.96715 1.21549 0.99584 0.96560 0.97895 1.21494 1.01806 0.97907 0.93638 1.21560 0.99495 0.95687 0.98149 0.91887 0.91886 0.92330 0.96391 0.96527 0.93100 0.91020 0.94507 0.93160 0.93814 0.93324 0.91295 0.91150 0.90731 0.90217 0.93068 0.91105 0.91631 0.93335 0.94136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.37 8.30 71.98 0.60 -4.77 16 2 C 0.09 3.76 2.12 44.92 0.10 3.86 16 3 H 0.06 2.63 5.96 -2.39 -0.01 2.61 16 4 C 0.00 -0.17 3.46 29.85 0.10 -0.07 16 5 C -0.49 -28.82 9.39 25.60 0.24 -28.58 16 6 H 0.03 2.25 7.99 -2.91 -0.02 2.23 16 7 C 0.00 -0.25 5.47 84.65 0.46 0.21 16 8 N -0.96 -62.47 13.96 21.45 0.30 -62.17 16 9 Si 0.94 45.89 27.47 68.60 1.88 47.78 16 10 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 12 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 13 N -0.54 -20.56 4.28 -871.79 -3.73 -24.29 16 14 C 0.03 0.90 8.08 127.69 1.03 1.93 16 15 C 0.09 2.71 1.83 44.92 0.08 2.80 16 16 C -0.11 -2.99 4.69 30.60 0.14 -2.85 16 17 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 18 C -0.12 -2.45 5.92 30.60 0.18 -2.27 16 19 C -0.11 -2.57 5.92 30.59 0.18 -2.39 16 20 C -0.11 -3.51 5.11 30.60 0.16 -3.35 16 21 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 22 H 0.06 1.70 6.45 -2.38 -0.02 1.69 16 23 H 0.06 1.73 6.79 -2.39 -0.02 1.72 16 24 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 25 H 0.02 0.78 5.74 -2.39 -0.01 0.77 16 26 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 27 H 0.07 2.19 6.20 -2.39 -0.01 2.17 16 28 H 0.04 1.05 6.59 -2.39 -0.02 1.03 16 29 H 0.05 1.89 6.26 -2.39 -0.01 1.87 16 30 H 0.04 1.24 6.42 -2.39 -0.02 1.23 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.69 6.32 -2.39 -0.02 1.68 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 1.64 6.29 -2.39 -0.02 1.63 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -67.54 292.46 2.83 -64.70 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 0.93 Total: 11.49 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 3.46 Total: -37.51 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -3.44 Total: -86.46 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.78 kcal Total: -67.54 2.83 -64.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.289 kcal (2) G-P(sol) polarization free energy of solvation -67.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds