Wall clock time and date at job start Mon Mar 30 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47145 * 2 1 4 4 N 1.46904 * 109.47174 * 119.99798 * 2 1 3 5 5 C 1.46898 * 111.00069 * 169.43910 * 4 2 1 6 6 C 1.52998 * 109.47035 * 293.95465 * 5 4 2 7 7 C 1.53000 * 117.49795 * 185.00418 * 6 5 4 8 8 C 1.52994 * 117.49983 * 116.38060 * 6 5 4 9 9 C 1.46898 * 110.99962 * 293.39633 * 4 2 1 10 10 H 1.09007 * 109.47389 * 33.08001 * 9 4 2 11 11 C 1.53005 * 109.47065 * 273.08109 * 9 4 2 12 12 C 1.53004 * 109.47236 * 153.08271 * 9 4 2 13 13 C 1.50699 * 109.47129 * 294.48823 * 12 9 4 14 14 H 1.08007 * 119.99630 * 354.97819 * 13 12 9 15 15 C 1.37873 * 120.00298 * 174.97211 * 13 12 9 16 16 N 1.31515 * 119.99716 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00232 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46965 * 90.00339 * 17 15 13 19 19 H 1.48497 * 109.47461 * 209.99927 * 17 15 13 20 20 H 1.48498 * 109.47403 * 330.00232 * 17 15 13 21 21 H 1.08999 * 109.47021 * 306.20303 * 1 2 3 22 22 H 1.09003 * 109.47343 * 66.20357 * 1 2 3 23 23 H 1.08997 * 109.47199 * 186.20778 * 1 2 3 24 24 H 1.09003 * 109.47376 * 239.99527 * 2 1 3 25 25 H 1.09000 * 109.47238 * 172.14790 * 3 2 1 26 26 H 1.09001 * 109.47382 * 292.14618 * 3 2 1 27 27 H 1.09001 * 109.47637 * 52.14956 * 3 2 1 28 28 H 1.09003 * 109.46970 * 173.95627 * 5 4 2 29 29 H 1.08992 * 109.46961 * 53.95635 * 5 4 2 30 30 H 1.08999 * 115.56262 * 330.68816 * 6 5 4 31 31 H 1.08996 * 117.50337 * 145.02100 * 7 6 5 32 32 H 1.08994 * 117.49924 * 359.97438 * 7 6 5 33 33 H 1.09008 * 117.50018 * 359.97438 * 8 6 5 34 34 H 1.09007 * 117.52073 * 214.97034 * 8 6 5 35 35 H 1.08995 * 109.47316 * 179.97438 * 11 9 4 36 36 H 1.09007 * 109.46929 * 300.00174 * 11 9 4 37 37 H 1.09001 * 109.46973 * 60.00130 * 11 9 4 38 38 H 1.08999 * 109.47186 * 54.48962 * 12 9 4 39 39 H 1.08996 * 109.46799 * 174.48991 * 12 9 4 40 40 H 0.97001 * 119.99969 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4662 -0.9336 1.1145 6 6 3.7529 -1.9211 -0.0184 7 6 5.1972 -2.3942 -0.1947 8 6 4.5837 -1.4182 -1.2006 9 6 1.6817 0.0587 2.4158 10 1 0.7292 0.5696 2.2745 11 6 2.7763 1.0895 2.6993 12 6 1.5722 -0.9069 3.5976 13 6 0.4067 -1.8371 3.3799 14 1 -0.2443 -1.6973 2.5295 15 6 0.1714 -2.8667 4.2663 16 7 0.9639 -3.0366 5.3020 17 14 -1.2736 -4.0192 3.9968 18 1 -0.8410 -5.1685 3.1617 19 1 -1.7616 -4.5163 5.3082 20 1 -2.3670 -3.2893 3.3062 21 1 -0.3633 0.6070 0.8292 22 1 -0.3634 0.4147 -0.9403 23 1 -0.3633 -1.0216 0.1111 24 1 1.8934 -0.5139 -0.8899 25 1 3.1209 1.4457 0.1404 26 1 1.7958 1.9142 -0.9518 27 1 1.5666 1.9953 0.8114 28 1 3.8213 -1.3494 2.0574 29 1 3.9802 0.0067 0.9156 30 1 2.9593 -2.6378 -0.2297 31 1 5.3539 -3.4220 -0.5219 32 1 5.9432 -2.0016 0.4962 33 1 4.9257 -0.3836 -1.1715 34 1 4.3370 -1.8039 -2.1899 35 1 2.5253 1.6472 3.6015 36 1 3.7288 0.5786 2.8405 37 1 2.8543 1.7774 1.8573 38 1 2.4907 -1.4880 3.6784 39 1 1.4185 -0.3407 4.5163 40 1 0.7982 -3.7607 5.9258 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829180382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:49 Heat of formation + Delta-G solvation = 25.581951 kcal Electronic energy + Delta-G solvation = -16789.638082 eV Core-core repulsion = 14412.322765 eV Total energy + Delta-G solvation = -2377.315317 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.14485 -36.46618 -33.31904 -31.82350 -29.75997 -27.95533 -26.34210 -25.26792 -22.82716 -22.19246 -20.91247 -20.20835 -18.02046 -16.41542 -15.63317 -15.03074 -14.69705 -14.26168 -14.21056 -13.50728 -13.15123 -12.70836 -12.38948 -12.02921 -11.79559 -11.62316 -11.38159 -11.24366 -11.22597 -10.99916 -10.78622 -10.73394 -10.53246 -10.46017 -10.17674 -10.10900 -9.57053 -9.52050 -9.05257 -8.86609 -8.18343 -7.34881 -5.81354 -3.78063 3.43160 3.48860 3.52125 4.06132 4.52594 4.62113 5.05726 5.19508 5.28542 5.34694 5.50519 5.55774 5.71182 5.75004 5.80150 5.81785 5.88983 5.97532 6.02876 6.07357 6.11320 6.20694 6.26574 6.29117 6.30092 6.39442 6.55533 6.68218 6.70864 6.75801 6.80647 7.15377 7.64829 7.78411 8.02210 8.16871 8.20992 8.67201 9.26522 9.82445 11.30924 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.008853 C = 0.008145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.573831 B = 3161.907918 C = 3436.991666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.076 3.924 3 C -0.186 4.186 4 N -0.501 5.501 5 C 0.088 3.912 6 C -0.133 4.133 7 C -0.182 4.182 8 C -0.190 4.190 9 C 0.086 3.914 10 H 0.069 0.931 11 C -0.200 4.200 12 C 0.034 3.966 13 C -0.483 4.483 14 H 0.058 0.942 15 C 0.050 3.950 16 N -0.905 5.905 17 Si 0.887 3.113 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.276 1.276 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.029 0.971 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.011 0.989 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.046 6.243 -11.247 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C -0.244 4.244 4 N -0.223 5.223 5 C -0.040 4.040 6 C -0.152 4.152 7 C -0.220 4.220 8 C -0.227 4.227 9 C -0.022 4.022 10 H 0.087 0.913 11 C -0.258 4.258 12 C -0.004 4.004 13 C -0.521 4.521 14 H 0.076 0.924 15 C -0.149 4.149 16 N -0.546 5.546 17 Si 0.716 3.284 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.201 1.201 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.047 0.953 30 H 0.130 0.870 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.029 0.971 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.811 5.670 -11.061 13.328 hybrid contribution -0.272 0.022 -0.095 0.289 sum 4.540 5.692 -11.156 13.321 Atomic orbital electron populations 1.21833 0.94801 1.02943 1.00236 1.21678 0.95613 0.91545 0.94470 1.22771 1.01083 0.99294 1.01263 1.62285 1.12192 1.46770 1.01089 1.21662 0.89509 0.95362 0.97483 1.22385 0.93927 1.01781 0.97103 1.22894 0.97036 0.99188 1.02847 1.23012 1.05893 0.99030 0.94755 1.21930 0.95860 0.93039 0.91381 0.91274 1.23020 1.00895 1.00388 1.01502 1.19124 0.97683 0.93237 0.90324 1.21137 1.10973 1.11615 1.08394 0.92412 1.24982 0.96491 0.97843 0.95606 1.69966 1.38366 1.32066 1.14200 0.86672 0.83224 0.81458 0.77030 1.20987 1.21722 1.20131 0.92588 0.93621 0.91448 0.90726 0.92701 0.93472 0.91908 0.90166 0.95290 0.87046 0.89150 0.89176 0.89491 0.89458 0.93063 0.92941 0.92372 0.96187 0.97062 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.06 37.16 0.34 -1.89 16 2 C 0.08 1.20 2.78 -67.72 -0.19 1.01 16 3 C -0.19 -2.56 7.33 37.15 0.27 -2.28 16 4 N -0.50 -9.38 4.07 -218.72 -0.89 -10.27 16 5 C 0.09 1.50 3.73 -3.83 -0.01 1.48 16 6 C -0.13 -2.03 4.67 -90.62 -0.42 -2.46 16 7 C -0.18 -2.39 10.25 -26.73 -0.27 -2.66 16 8 C -0.19 -2.37 10.12 -26.73 -0.27 -2.64 16 9 C 0.09 1.73 1.60 -67.71 -0.11 1.62 16 10 H 0.07 1.42 5.63 -51.93 -0.29 1.13 16 11 C -0.20 -3.45 7.62 37.16 0.28 -3.17 16 12 C 0.03 0.86 4.55 -27.88 -0.13 0.73 16 13 C -0.48 -13.57 8.85 -34.44 -0.30 -13.88 16 14 H 0.06 1.60 7.75 -52.48 -0.41 1.20 16 15 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 16 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 17 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 18 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H 0.06 0.93 6.46 -51.93 -0.34 0.59 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 24 H 0.07 1.13 6.94 -51.93 -0.36 0.77 16 25 H 0.05 0.75 5.43 -51.93 -0.28 0.47 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.90 5.95 -51.93 -0.31 0.59 16 28 H 0.08 1.56 6.66 -51.93 -0.35 1.21 16 29 H 0.03 0.46 5.00 -51.93 -0.26 0.20 16 30 H 0.11 1.87 8.14 -51.93 -0.42 1.44 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.04 8.03 -51.92 -0.42 0.62 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.91 6.39 -51.93 -0.33 0.57 16 37 H 0.06 0.88 4.08 -51.93 -0.21 0.67 16 38 H 0.02 0.55 7.12 -51.93 -0.37 0.18 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 301.27 15.07 4.54 4.54 Total: -1.00 -29.53 301.27 -8.41 -37.94 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.86 Total: 0.18 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: -0.92 Total: -22.78 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.15 Total: -37.18 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.53 -8.41 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.524 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds