Wall clock time and date at job start Mon Mar 30 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47145 * 2 1 4 4 N 1.46904 * 109.47174 * 119.99798 * 2 1 3 5 5 C 1.46898 * 111.00069 * 169.43910 * 4 2 1 6 6 C 1.52998 * 109.47035 * 293.95465 * 5 4 2 7 7 C 1.53000 * 117.49795 * 185.00418 * 6 5 4 8 8 C 1.52994 * 117.49983 * 116.38060 * 6 5 4 9 9 C 1.46898 * 110.99962 * 293.39633 * 4 2 1 10 10 H 1.09007 * 109.47389 * 33.08001 * 9 4 2 11 11 C 1.53005 * 109.47065 * 273.08109 * 9 4 2 12 12 C 1.53004 * 109.47236 * 153.08271 * 9 4 2 13 13 C 1.50699 * 109.47129 * 294.48823 * 12 9 4 14 14 H 1.08007 * 119.99630 * 354.97819 * 13 12 9 15 15 C 1.37873 * 120.00298 * 174.97211 * 13 12 9 16 16 N 1.31515 * 119.99716 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00232 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46965 * 90.00339 * 17 15 13 19 19 H 1.48497 * 109.47461 * 209.99927 * 17 15 13 20 20 H 1.48498 * 109.47403 * 330.00232 * 17 15 13 21 21 H 1.08999 * 109.47021 * 306.20303 * 1 2 3 22 22 H 1.09003 * 109.47343 * 66.20357 * 1 2 3 23 23 H 1.08997 * 109.47199 * 186.20778 * 1 2 3 24 24 H 1.09003 * 109.47376 * 239.99527 * 2 1 3 25 25 H 1.09000 * 109.47238 * 172.14790 * 3 2 1 26 26 H 1.09001 * 109.47382 * 292.14618 * 3 2 1 27 27 H 1.09001 * 109.47637 * 52.14956 * 3 2 1 28 28 H 1.09003 * 109.46970 * 173.95627 * 5 4 2 29 29 H 1.08992 * 109.46961 * 53.95635 * 5 4 2 30 30 H 1.08999 * 115.56262 * 330.68816 * 6 5 4 31 31 H 1.08996 * 117.50337 * 145.02100 * 7 6 5 32 32 H 1.08994 * 117.49924 * 359.97438 * 7 6 5 33 33 H 1.09008 * 117.50018 * 359.97438 * 8 6 5 34 34 H 1.09007 * 117.52073 * 214.97034 * 8 6 5 35 35 H 1.08995 * 109.47316 * 179.97438 * 11 9 4 36 36 H 1.09007 * 109.46929 * 300.00174 * 11 9 4 37 37 H 1.09001 * 109.46973 * 60.00130 * 11 9 4 38 38 H 1.08999 * 109.47186 * 54.48962 * 12 9 4 39 39 H 1.08996 * 109.46799 * 174.48991 * 12 9 4 40 40 H 0.97001 * 119.99969 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4662 -0.9336 1.1145 6 6 3.7529 -1.9211 -0.0184 7 6 5.1972 -2.3942 -0.1947 8 6 4.5837 -1.4182 -1.2006 9 6 1.6817 0.0587 2.4158 10 1 0.7292 0.5696 2.2745 11 6 2.7763 1.0895 2.6993 12 6 1.5722 -0.9069 3.5976 13 6 0.4067 -1.8371 3.3799 14 1 -0.2443 -1.6973 2.5295 15 6 0.1714 -2.8667 4.2663 16 7 0.9639 -3.0366 5.3020 17 14 -1.2736 -4.0192 3.9968 18 1 -0.8410 -5.1685 3.1617 19 1 -1.7616 -4.5163 5.3082 20 1 -2.3670 -3.2893 3.3062 21 1 -0.3633 0.6070 0.8292 22 1 -0.3634 0.4147 -0.9403 23 1 -0.3633 -1.0216 0.1111 24 1 1.8934 -0.5139 -0.8899 25 1 3.1209 1.4457 0.1404 26 1 1.7958 1.9142 -0.9518 27 1 1.5666 1.9953 0.8114 28 1 3.8213 -1.3494 2.0574 29 1 3.9802 0.0067 0.9156 30 1 2.9593 -2.6378 -0.2297 31 1 5.3539 -3.4220 -0.5219 32 1 5.9432 -2.0016 0.4962 33 1 4.9257 -0.3836 -1.1715 34 1 4.3370 -1.8039 -2.1899 35 1 2.5253 1.6472 3.6015 36 1 3.7288 0.5786 2.8405 37 1 2.8543 1.7774 1.8573 38 1 2.4907 -1.4880 3.6784 39 1 1.4185 -0.3407 4.5163 40 1 0.7982 -3.7607 5.9258 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829180382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:49 Heat of formation + Delta-G solvation = 8.607740 kcal Electronic energy + Delta-G solvation = -16790.374139 eV Core-core repulsion = 14412.322765 eV Total energy + Delta-G solvation = -2378.051374 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.52627 -37.64185 -35.24503 -33.56376 -31.24165 -29.57733 -27.87715 -26.61388 -24.82689 -23.22576 -22.24672 -21.57733 -19.46773 -18.40710 -17.24573 -16.55675 -16.25838 -15.76741 -15.49465 -14.84890 -14.45306 -14.34279 -13.96128 -13.57177 -13.30040 -13.18302 -13.07355 -12.62168 -12.58592 -12.45735 -12.37620 -12.27243 -12.01238 -11.94203 -11.81247 -11.43196 -11.08734 -10.92970 -10.87553 -10.59923 -10.43654 -8.76879 -8.06399 -6.10199 1.41156 1.42696 1.52710 2.48821 2.95354 3.16988 3.30993 3.94252 4.05339 4.13067 4.18075 4.28598 4.35599 4.50662 4.52113 4.53598 4.63600 4.75610 4.81357 4.85449 4.92645 5.00856 5.02537 5.09089 5.11668 5.13096 5.26141 5.30975 5.34109 5.41772 5.46556 5.52499 5.59490 5.75171 5.93810 6.39575 6.62583 6.66927 7.03475 7.54576 9.06011 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.008853 C = 0.008145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.573831 B = 3161.907918 C = 3436.991666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.076 3.924 3 C -0.179 4.179 4 N -0.526 5.526 5 C 0.096 3.904 6 C -0.159 4.159 7 C -0.180 4.180 8 C -0.161 4.161 9 C 0.097 3.903 10 H 0.066 0.934 11 C -0.191 4.191 12 C 0.040 3.960 13 C -0.490 4.490 14 H 0.058 0.942 15 C -0.008 4.008 16 N -0.942 5.942 17 Si 0.954 3.046 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.265 1.265 21 H 0.043 0.957 22 H 0.076 0.924 23 H 0.041 0.959 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.087 0.913 38 H -0.012 1.012 39 H -0.016 1.016 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.062 7.102 -13.666 16.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.237 4.237 4 N -0.249 5.249 5 C -0.032 4.032 6 C -0.178 4.178 7 C -0.218 4.218 8 C -0.198 4.198 9 C -0.011 4.011 10 H 0.084 0.916 11 C -0.249 4.249 12 C 0.002 3.998 13 C -0.528 4.528 14 H 0.077 0.923 15 C -0.203 4.203 16 N -0.585 5.585 17 Si 0.781 3.219 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.189 1.189 21 H 0.062 0.938 22 H 0.095 0.905 23 H 0.060 0.940 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.007 0.993 39 H 0.002 0.998 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.825 6.540 -13.500 15.758 hybrid contribution -0.263 -0.256 0.647 0.743 sum 4.562 6.284 -12.853 15.017 Atomic orbital electron populations 1.21820 0.95037 1.01310 1.01401 1.21732 0.95393 0.92900 0.93166 1.22663 1.01082 0.97509 1.02476 1.62112 1.13466 1.47779 1.01549 1.21532 0.88654 0.96385 0.96579 1.22198 0.94757 1.02220 0.98645 1.22992 0.95376 1.00197 1.03216 1.23072 1.02891 0.99524 0.94325 1.21561 0.97007 0.92258 0.90267 0.91572 1.22926 0.99438 0.99892 1.02659 1.18990 0.95412 0.93505 0.91850 1.21474 1.11417 1.11902 1.08019 0.92349 1.25848 0.99335 0.99751 0.95412 1.70107 1.40287 1.32898 1.15227 0.85604 0.80035 0.79243 0.77061 1.20568 1.21321 1.18898 0.93761 0.90539 0.93970 0.89695 0.92268 0.90944 0.92525 0.93836 0.93511 0.89108 0.88290 0.88852 0.88228 0.87819 0.93245 0.93334 0.89409 0.99342 0.99790 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.06 71.98 0.65 -3.51 16 2 C 0.08 2.25 2.78 44.91 0.13 2.38 16 3 C -0.18 -4.32 7.33 71.98 0.53 -3.79 16 4 N -0.53 -19.64 4.07 -845.90 -3.44 -23.08 16 5 C 0.10 3.27 3.73 86.30 0.32 3.59 16 6 C -0.16 -4.72 4.67 -10.80 -0.05 -4.77 16 7 C -0.18 -4.43 10.25 30.59 0.31 -4.11 16 8 C -0.16 -3.52 10.12 30.59 0.31 -3.21 16 9 C 0.10 3.99 1.60 44.92 0.07 4.06 16 10 H 0.07 2.74 5.63 -2.38 -0.01 2.73 16 11 C -0.19 -6.50 7.62 71.98 0.55 -5.95 16 12 C 0.04 2.14 4.55 29.85 0.14 2.27 16 13 C -0.49 -28.33 8.85 25.60 0.23 -28.10 16 14 H 0.06 3.30 7.75 -2.91 -0.02 3.28 16 15 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 16 N -0.94 -59.40 13.29 21.45 0.28 -59.12 16 17 Si 0.95 46.50 29.54 68.60 2.03 48.52 16 18 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 20 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 21 H 0.04 1.42 6.46 -2.39 -0.02 1.40 16 22 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.08 2.35 6.94 -2.39 -0.02 2.34 16 25 H 0.06 1.39 5.43 -2.39 -0.01 1.37 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.45 5.95 -2.39 -0.01 1.44 16 28 H 0.04 1.76 6.66 -2.39 -0.02 1.75 16 29 H 0.05 1.39 5.00 -2.39 -0.01 1.38 16 30 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 33 H 0.10 1.96 8.03 -2.38 -0.02 1.94 16 34 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.68 6.39 -2.38 -0.02 1.66 16 37 H 0.09 2.47 4.08 -2.39 -0.01 2.46 16 38 H -0.01 -0.70 7.12 -2.39 -0.02 -0.72 16 39 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -65.32 301.27 3.51 -61.82 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.99 Total: 13.04 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 3.64 Total: -41.17 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -3.16 Total: -82.20 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -65.32 3.51 -61.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.423 kcal (2) G-P(sol) polarization free energy of solvation -65.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds